Cmc10g0275211 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0275211
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr10: 9107806 .. 9108246 (-)
RNA-Seq Expression	Cmc10g0275211
Synteny	Cmc10g0275211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCTAGTAAATTACTCAACCAGGGTACTTGGGGCATCTTGGCAAGCGTGGTAGATACCCGAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGGGAGTACCCTGATGTCTTCCCCGATGAGCTTCCAGGACTTCCGCCTCCTAGGGAGATAGACTTCGCCATTGAATTAGAACCAGGCACTGCTCCTATCTCGAGAGCCCCTTACATAATGGCTCCAGCCGAGCTAAAAGAGCTGAAGGTCCAGTTGCAGGAGTTGCTGGACAAGGGTTTCATCCGGCCCAGTGTGTCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGATTACCGAGAGCTGAACAAGGTGACAGTTAAAAACTGCTACCCGTTGCCTAGGATTGATGACTTGTTCGATCAGTTGTAG

mRNA sequence

ATGAAGGCTAGTAAATTACTCAACCAGGGTACTTGGGGCATCTTGGCAAGCGTGGTAGATACCCGAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGGGAGTACCCTGATGTCTTCCCCGATGAGCTTCCAGGACTTCCGCCTCCTAGGGAGATAGACTTCGCCATTGAATTAGAACCAGGCACTGCTCCTATCTCGAGAGCCCCTTACATAATGGCTCCAGCCGAGCTAAAAGAGCTGAAGGTCCAGTTGCAGGAGTTGCTGGACAAGGGTTTCATCCGGCCCAGTGTGTCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGATTACCGAGAGCTGAACAAGGTGACAGTTAAAAACTGCTACCCGTTGCCTAGGATTGATGACTTGTTCGATCAGTTGTAG

Coding sequence (CDS)

ATGAAGGCTAGTAAATTACTCAACCAGGGTACTTGGGGCATCTTGGCAAGCGTGGTAGATACCCGAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGGGAGTACCCTGATGTCTTCCCCGATGAGCTTCCAGGACTTCCGCCTCCTAGGGAGATAGACTTCGCCATTGAATTAGAACCAGGCACTGCTCCTATCTCGAGAGCCCCTTACATAATGGCTCCAGCCGAGCTAAAAGAGCTGAAGGTCCAGTTGCAGGAGTTGCTGGACAAGGGTTTCATCCGGCCCAGTGTGTCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGATTACCGAGAGCTGAACAAGGTGACAGTTAAAAACTGCTACCCGTTGCCTAGGATTGATGACTTGTTCGATCAGTTGTAG

Protein sequence

MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIELEPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQL

Homology

[Close]

BLAST of Cmc10g0275211 vs. NCBI nr
Match: KAA0033486.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 2.9e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 526 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 585

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 586 EPGTAPISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 645

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKNCYPLPRIDDLFDQL
Sbjct: 646 DYRELNKVTVKNCYPLPRIDDLFDQL 671

[Close]

BLAST of Cmc10g0275211 vs. NCBI nr
Match: KAA0040693.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 2.9e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 283 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 342

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 343 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 402

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKNCYPLPRIDDLFDQL
Sbjct: 403 DYRELNKVTVKNCYPLPRIDDLFDQL 428

[Close]

BLAST of Cmc10g0275211 vs. NCBI nr
Match: KAA0031437.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 5.5e-74
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 481 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 540

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 541 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 600

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKN YPLPRIDDLFDQL
Sbjct: 601 DYRELNKVTVKNRYPLPRIDDLFDQL 626

[Close]

BLAST of Cmc10g0275211 vs. NCBI nr
Match: KAA0033825.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 5.5e-74
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1    MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
            MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 1145 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 1204

Query: 61   EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
            EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 1205 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 1264

Query: 121  DYRELNKVTVKNCYPLPRIDDLFDQL 147
            DYRELNKVTVKN YPLPRIDDLFDQL
Sbjct: 1265 DYRELNKVTVKNRYPLPRIDDLFDQL 1290

[Close]

BLAST of Cmc10g0275211 vs. NCBI nr
Match: KAA0025848.1 (pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo var. makuwa] >KAA0036593.1 pol protein [Cucumis melo var. makuwa] >KAA0036739.1 pol protein [Cucumis melo var. makuwa] >KAA0037408.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 5.5e-74
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKN YPLPRIDDLFDQL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQL 685

[Close]

BLAST of Cmc10g0275211 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-18
Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = 0


Query: 2   KASKLLNQGTWGILASVVDTREPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 61
           +AS L   G +  + S + + EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 520 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 579

Query: 62  EID-----FAIELEPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVL 121
           +I+       IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+
Sbjct: 580 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 639

Query: 122 FVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQL 147
            V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++
Sbjct: 640 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 676

[Close]

BLAST of Cmc10g0275211 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-18
Identity = 55/159 (34.59%), Postives = 87/159 (54.72%), Query Frame = 0


Query: 2   KASKLLNQGTWGILASVVDTREPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 61
           +AS L   G +  + S + + EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 546 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 605

Query: 62  EID-----FAIELEPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVL 121
           +I+       IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+
Sbjct: 606 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 665

Query: 122 FVKKKDGSMRLCIDYRELNKVTVKNCYPLPRIDDLFDQL 147
            V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++
Sbjct: 666 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRI 702

[Close]

BLAST of Cmc10g0275211 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-12
Identity = 42/132 (31.82%), Postives = 69/132 (52.27%), Query Frame = 0


Query: 35  REYPDVFPDELPGLPPPREIDFAIELEPGTA--------------PISRAPYIMAPAELK 94
           + +P++F  +L  +       FA+E EP T               P+    Y    ++++
Sbjct: 269 KNFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE 328

Query: 95  ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG------SMRLCIDYRELNKVTVKNCY 147
           E++ Q+Q+L+    + PSVS + +P+L V KK          RL IDYR++NK  + + +
Sbjct: 329 EIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKF 388

[Close]

BLAST of Cmc10g0275211 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 38/127 (29.92%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 22  REPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REIDFAIELEPGTAPISRAPYIMAPAEL 81
           +EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y + P ++
Sbjct: 370 KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKM 429

Query: 82  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRI 141
           + +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I
Sbjct: 430 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLI 489

Query: 142 DDLFDQL 147
           + L  ++
Sbjct: 490 EQLLAKI 492

[Close]

BLAST of Cmc10g0275211 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 38/127 (29.92%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 22  REPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REIDFAIELEPGTAPISRAPYIMAPAEL 81
           +EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y + P ++
Sbjct: 370 KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKM 429

Query: 82  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNCYPLPRI 141
           + +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I
Sbjct: 430 QAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLI 489

Query: 142 DDLFDQL 147
           + L  ++
Sbjct: 490 EQLLAKI 492

[Close]

BLAST of Cmc10g0275211 vs. ExPASy TrEMBL
Match: A0A5A7SU25 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00200 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 526 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 585

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 586 EPGTAPISRAPYKMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 645

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKNCYPLPRIDDLFDQL
Sbjct: 646 DYRELNKVTVKNCYPLPRIDDLFDQL 671

[Close]

BLAST of Cmc10g0275211 vs. ExPASy TrEMBL
Match: A0A5A7TC72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00070 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 283 MKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 342

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 343 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 402

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKNCYPLPRIDDLFDQL
Sbjct: 403 DYRELNKVTVKNCYPLPRIDDLFDQL 428

[Close]

BLAST of Cmc10g0275211 vs. ExPASy TrEMBL
Match: A0A5D3CQB5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001420 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.7e-74
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKN YPLPRIDDLFDQL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQL 685

[Close]

BLAST of Cmc10g0275211 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.7e-74
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKN YPLPRIDDLFDQL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQL 685

[Close]

BLAST of Cmc10g0275211 vs. ExPASy TrEMBL
Match: A0A5A7TEQ2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00410 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.7e-74
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MKASKLLNQGTWGILASVVDTREPEVSLSSEPVVREYPDVFPDELPGLPPPREIDFAIEL 60
           MKASKLL+QGTWGILASVVD REPEVSLSSEPVVREYPDVFPDELPGLPPPRE+DFAIEL
Sbjct: 540 MKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIEL 599

Query: 61  EPGTAPISRAPYIMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 120
           EPGTAPISRAPY MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI
Sbjct: 600 EPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCI 659

Query: 121 DYRELNKVTVKNCYPLPRIDDLFDQL 147
           DYRELNKVTVKN YPLPRIDDLFDQL
Sbjct: 660 DYRELNKVTVKNRYPLPRIDDLFDQL 685

[Close]

BLAST of Cmc10g0275211 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 8.4e-04
Identity = 18/33 (54.55%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 82  LKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDG 115
           LK  L E+L+   I+PS+SP+ +PVL V+KKDG
Sbjct: 45  LKNWLGEMLEARIIQPSISPYSSPVLLVQKKDG 77

The following BLAST results are available for this feature:

BLAST of Cmc10g0275211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033486.1	2.9e-75	97.26	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0040693.1	2.9e-75	97.26	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031437.1	5.5e-74	96.58	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033825.1	5.5e-74	96.58	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025848.1	5.5e-74	96.58	pol protein [Cucumis melo var. makuwa] >KAA0035212.1 pol protein [Cucumis melo v...	[more]

BLAST of Cmc10g0275211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	3.4e-18	34.59	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.4e-18	34.59	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	3.6e-12	31.82	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
Q9UR07	1.2e-10	29.92	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.2e-10	29.92	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc10g0275211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SU25	1.4e-75	97.26	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5A7TC72	1.4e-75	97.26	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CQB5	2.7e-74	96.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UBS1	2.7e-74	96.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TEQ2	2.7e-74	96.58	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19...	[more]

BLAST of Cmc10g0275211 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	8.4e-04	54.55	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 51..146 e-value: 5.4E-36 score: 125.2
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 26..143
None	No IPR available	PANTHER	PTHR24559:SF382	SUBFAMILY NOT NAMED	coord: 26..143
None	No IPR available	CDD	cd01647	RT_LTR	coord: 93..146 e-value: 1.85302E-28 score: 101.133
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 33..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0275211.1	Cmc10g0275211.1	mRNA