Cmc10g0275201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0275201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr10: 9107212 .. 9107685 (-)
RNA-Seq Expression	Cmc10g0275201
Synteny	Cmc10g0275201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTGGCTTGACTAATGCCCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTCTTCATTGATGACATCTTGATTTACTCCAAAACTGAGGTTGAGCACGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAACAAGTTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAAGAAGGTGACGTTCCTTGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGATCCAGCAAAGATCGAAGCGGTGACCAACTGGCCTCGACCGTCCACAGTTAGTGAGATTCGAAGTTTTCTGGGCTTGGCAGGTTACTACAAGAGGTTCGTGGAAGACTTCTCACGTATAACCAGCCCGTTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCCAACATGCGAGAGTAGCTTTCAGGAGCTTAAGTAG

mRNA sequence

ATGTCTTTTGGCTTGACTAATGCCCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTCTTCATTGATGACATCTTGATTTACTCCAAAACTGAGGTTGAGCACGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAACAAGTTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAAGAAGGTGACGTTCCTTGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGATCCAGCAAAGATCGAAGCGGTGACCAACTGGCCTCGACCGTCCACAGTTAGTGAGATTCGAAGTTTTCTGGGCTTGGCAGGTTACTACAAGAGGTTCGTGGAAGACTTCTCACGTATAACCAGCCCGTTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCCAACATGCGAGAGTAGCTTTCAGGAGCTTAAGTAG

Coding sequence (CDS)

ATGTCTTTTGGCTTGACTAATGCCCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGACTTCCTAGACTCGTTCGTCATAGTCTTCATTGATGACATCTTGATTTACTCCAAAACTGAGGTTGAGCACGAGGAGCACTTGCACCAGGTTTTGGAGACTCTTCGAGCCAACAAGTTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAAGAAGGTGACGTTCCTTGGCCACGTGGTTTCCAGTGAGGGAGTTTCTGTGGATCCAGCAAAGATCGAAGCGGTGACCAACTGGCCTCGACCGTCCACAGTTAGTGAGATTCGAAGTTTTCTGGGCTTGGCAGGTTACTACAAGAGGTTCGTGGAAGACTTCTCACGTATAACCAGCCCGTTGACCCAGTTGACCAGGAAGGGAACCCCTTTTGTCTGGAGCCCAACATGCGAGAGTAGCTTTCAGGAGCTTAAGTAG

Protein sequence

MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYKRFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK

Homology

[Close]

BLAST of Cmc10g0275201 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 8.5e-81
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 677

[Close]

BLAST of Cmc10g0275201 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 8.5e-81
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 841

[Close]

BLAST of Cmc10g0275201 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 8.5e-81
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 838

[Close]

BLAST of Cmc10g0275201 vs. NCBI nr
Match: KAA0058812.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDF+DSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 600 MSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 660 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 720 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 756

[Close]

BLAST of Cmc10g0275201 vs. NCBI nr
Match: KAA0051719.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 309.3 bits (791), Expect = 1.9e-80
Identity = 151/157 (96.18%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 673 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 732

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 733 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 792

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTR+GTPFVWSPTCESSFQ+LK
Sbjct: 793 RFVEDFSRIASPLTQLTREGTPFVWSPTCESSFQKLK 829

[Close]

BLAST of Cmc10g0275201 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.9e-29
Identity = 62/158 (39.24%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           L  +  KCEF  ++ TFLGHV++ +G+  +P KIEA+  +P P+   EI++FLGL GYY+
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRITSPLTQLTRKGTPF-VWSPTCESSFQELK 158
           +F+ +F+ I  P+T+  +K       +P  +S+F++LK
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLK 491

[Close]

BLAST of Cmc10g0275201 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.4e-27
Identity = 55/141 (39.01%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           M FGL NAPA F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           L  +  KCEF  K+  FLGH+V+ +G+  +P K++A+ ++P P+   EIR+FLGL GYY+
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRITSPLTQLTRKGT 142
           +F+ +++ I  P+T   +K T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRT 473

[Close]

BLAST of Cmc10g0275201 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-25
Identity = 55/168 (32.74%), Postives = 96/168 (57.14%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           + FGL NAPA+F  +++ + ++ +     V+IDDI+++S+    H ++L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           L     K  F   +V FLG++V+++G+  DP K+ A++  P P++V E++ FLG+  YY+
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRITSPLTQLTR-----------KGTPFVWSPTCESSFQELK 158
           +F++D++++  PLT LTR              P     T   SF +LK
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLK 417

[Close]

BLAST of Cmc10g0275201 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-24
Identity = 54/157 (34.39%), Postives = 91/157 (57.96%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           M +G++ APA F   +N +  +  +S V+ ++DDILI+SK+E EH +H+  VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           L    +KCEF   +V F+G+ +S +G +     I+ V  W +P    E+R FLG   Y +
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           +F+   S++T PL  L +K   + W+PT   + + +K
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of Cmc10g0275201 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-24
Identity = 54/157 (34.39%), Postives = 91/157 (57.96%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           M +G++ APA F   +N +  +  +S V+ ++DDILI+SK+E EH +H+  VL+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           L    +KCEF   +V F+G+ +S +G +     I+ V  W +P    E+R FLG   Y +
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           +F+   S++T PL  L +K   + W+PT   + + +K
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIK 690

[Close]

BLAST of Cmc10g0275201 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.1e-81
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 841

[Close]

BLAST of Cmc10g0275201 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.1e-81
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 677

[Close]

BLAST of Cmc10g0275201 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.1e-81
Identity = 152/157 (96.82%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 838

[Close]

BLAST of Cmc10g0275201 vs. ExPASy TrEMBL
Match: A0A5A7USG7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002890 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.0e-81
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDF+DSFVIVFIDDILIYSKTE EHEEHLHQVLETLRANK
Sbjct: 600 MSFGLTNAPAVFMDLMNRVFKDFIDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 659

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 660 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 719

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 720 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 756

[Close]

BLAST of Cmc10g0275201 vs. ExPASy TrEMBL
Match: A0A5A7VGL6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50G00110 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.2e-81
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEVEHEEHLHQVLETLRANK 60
           MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTE EHEEHLHQVLET+RANK
Sbjct: 676 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANK 735

Query: 61  LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYK 120
           LYAKFSKCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY+
Sbjct: 736 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 795

Query: 121 RFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
           RFVEDFSRI SPLTQLTRKGTPFVWSP CESSFQELK
Sbjct: 796 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 832

[Close]

BLAST of Cmc10g0275201 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-23
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 48  HLHQVLETLRANKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSVDPAKIEAVTNWPRPST 107
           HL  VL+    ++ YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEIRSFLGLAGYYKRFVEDFSRITSPLTQLTRKGTPFVWSPTCESSFQELK 158
            +E+R FLGL GYY+RFV+++ +I  PLT+L +K +   W+     +F+ LK
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALK 113

The following BLAST results are available for this feature:

BLAST of Cmc10g0275201 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066951.1	8.5e-81	96.82	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	8.5e-81	96.82	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054634.1	8.5e-81	96.82	pol protein [Cucumis melo var. makuwa]	[more]
KAA0058812.1	1.5e-80	96.18	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051719.1	1.9e-80	96.18	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0275201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	7.9e-29	39.24	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	7.4e-27	39.01	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	1.4e-25	32.74	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P0CT41	1.2e-24	34.39	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.2e-24	34.39	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc10g0275201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4E4	4.1e-81	96.82	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7VMR4	4.1e-81	96.82	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UHL7	4.1e-81	96.82	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7USG7	7.0e-81	96.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5A7VGL6	9.2e-81	96.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50...	[more]

BLAST of Cmc10g0275201 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	3.9e-23	42.86	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 6.6E-35 score: 121.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..157 e-value: 9.9E-26 score: 91.6
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..81 e-value: 4.5E-16 score: 59.0
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 8.978112
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..157
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..157
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 1.09115E-40 score: 132.719
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0275201.1	Cmc10g0275201.1	mRNA