Cmc10g0275191 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0275191
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
LocationCMiso1.1chr10: 9106363 .. 9107115 (-)
RNA-Seq ExpressionCmc10g0275191
SyntenyCmc10g0275191
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACAACTTAGAGTTGGCAGCTGTAATCTTTGCACTGAAGATATGGAGGCACTACCTGTATGGTGAGAAGATACAGATTTACACTGACCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTGATGAAAGACTATGACTGCGAGATTCTGTACCACCCAAGTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGTAAGGTTGCACATTCAGCAGCGCTAATCACCAAGCAAGCCCCCTTACTCAGAGATTTTGAGAGAGCCGAGATTGCAGTCTCAGTAGGAGAGGTTACCTCACAGTTGGCTCAGTTGTCAGTTCAGCCAACCTTGAGGCAAAAGATTATCGTTGCTCAGCTGAATGATCCTTACTTGGTCGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTCCATATCCTCTGACGATGGCCTTATATTTGAGGGACGCCTGTGTGTTCTGGAAGACAGCGCAGACAAGACAGAACTTTTGATTGAGGCTCACAGTTCTCCATTTACCATGCACCCTAGAAGTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGAAACATGAAGAGAGAGGTTGCAGATTTTGTCAGTAGGTGCTTGGTGTGCCAGCAGGTGAAGACACCTAGATAG

mRNA sequence

ATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACAACTTAGAGTTGGCAGCTGTAATCTTTGCACTGAAGATATGGAGGCACTACCTGTATGGTGAGAAGATACAGATTTACACTGACCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTGATGAAAGACTATGACTGCGAGATTCTGTACCACCCAAGTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGTAAGGTTGCACATTCAGCAGCGCTAATCACCAAGCAAGCCCCCTTACTCAGAGATTTTGAGAGAGCCGAGATTGCAGTCTCAGTAGGAGAGGTTACCTCACAGTTGGCTCAGTTGTCAGTTCAGCCAACCTTGAGGCAAAAGATTATCGTTGCTCAGCTGAATGATCCTTACTTGGTCGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTCCATATCCTCTGACGATGGCCTTATATTTGAGGGACGCCTGTGTGTTCTGGAAGACAGCGCAGACAAGACAGAACTTTTGATTGAGGCTCACAGTTCTCCATTTACCATGCACCCTAGAAGTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGAAACATGAAGAGAGAGGTTGCAGATTTTGTCAGTAGGTGCTTGGTGTGCCAGCAGGTGAAGACACCTAGATAG

Coding sequence (CDS)

ATGCAGCAAGGTAAGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACCCACAACTTAGAGTTGGCAGCTGTAATCTTTGCACTGAAGATATGGAGGCACTACCTGTATGGTGAGAAGATACAGATTTACACTGACCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGGAGTTGAACATGAGGCAGAGGAGGTGGCTCGAGTTGATGAAAGACTATGACTGCGAGATTCTGTACCACCCAAGTAAAGCAAATGTAGTGGCTGACGCGCTGAGTAGTAAGGTTGCACATTCAGCAGCGCTAATCACCAAGCAAGCCCCCTTACTCAGAGATTTTGAGAGAGCCGAGATTGCAGTCTCAGTAGGAGAGGTTACCTCACAGTTGGCTCAGTTGTCAGTTCAGCCAACCTTGAGGCAAAAGATTATCGTTGCTCAGCTGAATGATCCTTACTTGGTCGAGAAGCGTCGTTTGGTAGAGACAGGGCAAGGTGAGGACTTCTCCATATCCTCTGACGATGGCCTTATATTTGAGGGACGCCTGTGTGTTCTGGAAGACAGCGCAGACAAGACAGAACTTTTGATTGAGGCTCACAGTTCTCCATTTACCATGCACCCTAGAAGTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGAAACATGAAGAGAGAGGTTGCAGATTTTGTCAGTAGGTGCTTGGTGTGCCAGCAGGTGAAGACACCTAGATAG

Protein sequence

MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFFTQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFERAEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGLIFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKTPR
Homology
BLAST of Cmc10g0275191 vs. NCBI nr
Match: KAA0050011.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 465.3 bits (1196), Expect = 3.3e-127
Identity = 233/250 (93.20%), Postives = 240/250 (96.00%), Query Frame = 0

Query: 1   MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
           MQQG+VVAYASRQLKSHEQNYPTH+LELAAV+FALKIWRHYLYGEKIQI TDHKSLKYFF
Sbjct: 598 MQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIITDHKSLKYFF 657

Query: 61  TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
           TQKELNMRQRRWLEL+KDYDCE+LYHP KANVVADALS KVAHSAALITKQAPLLRDFER
Sbjct: 658 TQKELNMRQRRWLELVKDYDCEMLYHPGKANVVADALSRKVAHSAALITKQAPLLRDFER 717

Query: 121 AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
           AEIAVSVGEVTSQLAQLSVQPTLRQ+IIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL
Sbjct: 718 AEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 777

Query: 181 IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
            FEGRLCV +DSA KTELL E HSSPFTMHP STKMYQDLRSVYWWRNMKREVADFVSRC
Sbjct: 778 TFEGRLCVPKDSAIKTELLTEIHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRC 837

Query: 241 LVCQQVKTPR 251
           LVCQQVK PR
Sbjct: 838 LVCQQVKAPR 847

BLAST of Cmc10g0275191 vs. NCBI nr
Match: KAA0063098.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 464.5 bits (1194), Expect = 5.6e-127
Identity = 231/250 (92.40%), Postives = 238/250 (95.20%), Query Frame = 0

Query: 1    MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
            MQQGKVVAYASRQLK+HEQNYPTH+LELAAV+FALKIWRHYLYGEKIQIYTDHKSLKYFF
Sbjct: 903  MQQGKVVAYASRQLKTHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFF 962

Query: 61   TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
            TQKELNMRQRRWLEL+KDYDCEILYHP KANVVADALS KVAHSAALITKQ PLLRDFER
Sbjct: 963  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFER 1022

Query: 121  AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
            AEI VSVGEVT+QLAQLSVQPTLRQKII AQLNDPYL EKRR+VETGQGEDFSISSDDGL
Sbjct: 1023 AEITVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLAEKRRMVETGQGEDFSISSDDGL 1082

Query: 181  IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
            +FEGRLCV EDSA KTELL EAHSSPFTMHP STKMYQDLRSVYWWR MKREVADFVSRC
Sbjct: 1083 MFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKREVADFVSRC 1142

Query: 241  LVCQQVKTPR 251
            LVCQQVK PR
Sbjct: 1143 LVCQQVKAPR 1152

BLAST of Cmc10g0275191 vs. NCBI nr
Match: KAA0045309.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 463.8 bits (1192), Expect = 9.6e-127
Identity = 231/250 (92.40%), Postives = 238/250 (95.20%), Query Frame = 0

Query: 1   MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
           MQQGKVVAYASRQLK HEQNYPTH+LELAAV+FALKIWRHYLYGEKIQIYTDHKSLKYFF
Sbjct: 441 MQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFF 500

Query: 61  TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
           TQKELNMRQRRWLEL+KDYDCEILYHP KANVVAD+LS KVAHSAALITKQ PLLRDFER
Sbjct: 501 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADSLSRKVAHSAALITKQTPLLRDFER 560

Query: 121 AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
           AEIAVSVGEVT+QLAQLSVQPTLRQKII AQLNDPYL EKRR+VETGQGEDFSISSDDGL
Sbjct: 561 AEIAVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLAEKRRMVETGQGEDFSISSDDGL 620

Query: 181 IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
           +FEGRLCV EDSA KTELL EAHSSPFTMHP STKMYQDLRSVYWWR MKREVADFVSRC
Sbjct: 621 MFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKREVADFVSRC 680

Query: 241 LVCQQVKTPR 251
           LVCQQVK PR
Sbjct: 681 LVCQQVKAPR 690

BLAST of Cmc10g0275191 vs. NCBI nr
Match: KAA0035204.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 463.8 bits (1192), Expect = 9.6e-127
Identity = 231/250 (92.40%), Postives = 239/250 (95.60%), Query Frame = 0

Query: 1    MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
            MQQGKVVAYASRQLK HEQNYPTH+LELAAV+FALKIWRHYLYGEKIQIYTDHKSLKYFF
Sbjct: 837  MQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFF 896

Query: 61   TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
            TQKELNMRQRRWLEL+KDYDCEILYHP KANVVADALS KVAHSAALITKQ PLLRDFER
Sbjct: 897  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFER 956

Query: 121  AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
            AEIAVSVGEVT+QLAQLSVQPTLRQKIIVAQL DPYLVEKRR+VETGQGE+FSISSDDGL
Sbjct: 957  AEIAVSVGEVTAQLAQLSVQPTLRQKIIVAQLEDPYLVEKRRMVETGQGENFSISSDDGL 1016

Query: 181  IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
            +FEGRLCV EDS  KTELL EAHSSPFTMHP STKMYQDLRSVYWWRNMKREVADF+SRC
Sbjct: 1017 MFEGRLCVPEDSVVKTELLSEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFISRC 1076

Query: 241  LVCQQVKTPR 251
            LVCQQVK PR
Sbjct: 1077 LVCQQVKAPR 1086

BLAST of Cmc10g0275191 vs. NCBI nr
Match: KAA0051386.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 463.4 bits (1191), Expect = 1.3e-126
Identity = 231/250 (92.40%), Postives = 239/250 (95.60%), Query Frame = 0

Query: 1   MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPTH+LELAAV+FALKIWRHYLYGEKIQIYTDHKSLKYFF
Sbjct: 572 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFF 631

Query: 61  TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
           TQKELNMRQRRWLEL+KDYDCEILYHP KANVVADALS KVAHS ALITKQ PLL DFER
Sbjct: 632 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSTALITKQTPLLIDFER 691

Query: 121 AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
           A IAVSVGE+TSQLAQLSVQPTLRQKI+VAQLNDPYLVEKRR+VETGQGE+FSISSDDGL
Sbjct: 692 AGIAVSVGEITSQLAQLSVQPTLRQKIVVAQLNDPYLVEKRRMVETGQGENFSISSDDGL 751

Query: 181 IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
           +FEGRLCV EDSA KTELL EAHSSPFTMHP STKMYQDLRSVYWWRNMKREVADFVSRC
Sbjct: 752 MFEGRLCVPEDSAVKTELLSEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRC 811

Query: 241 LVCQQVKTPR 251
           LVCQQVK PR
Sbjct: 812 LVCQQVKAPR 821

BLAST of Cmc10g0275191 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.3e-16
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 7   VAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGE-KIQIYTDHKSLKYFFTQKEL 66
           +AY SR L   E+NY T   E+ A+I++L   R YLYG   I++YTDH+ L +    +  
Sbjct: 461 IAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNF 520

Query: 67  NMRQRRWLELMKDYDCEILYHPSKANVVADALS 99
           N + +RW   +++Y+CE++Y P K+NVVADALS
Sbjct: 521 NAKLKRWKARIEEYNCELIYKPGKSNVVADALS 553

BLAST of Cmc10g0275191 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-15
Identity = 64/249 (25.70%), Postives = 116/249 (46.59%), Query Frame = 0

Query: 7   VAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE 66
           V Y S ++   + NY   + E+ A+I +LK WRHYL    E  +I TDH++L    T + 
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  --LNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFERAE 126
              N R  RW   ++D++ EI Y P  AN +ADALS        ++ +  P+ +D E   
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALS-------RIVDETEPIPKDSEDNS 854

Query: 127 IAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLV-----EKRRLVETGQGEDFSISSD 186
           I        + + Q+S+    + +++    ND  L+     E +R+ E       +I   
Sbjct: 855 I--------NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEE-------NIQLK 914

Query: 187 DGLIFEGRLCVL--EDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVAD 245
           DGL+   +  +L   D+     ++ + H     +HP    +   +   + W+ +++++ +
Sbjct: 915 DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 961

BLAST of Cmc10g0275191 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-15
Identity = 64/249 (25.70%), Postives = 116/249 (46.59%), Query Frame = 0

Query: 7   VAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE 66
           V Y S ++   + NY   + E+ A+I +LK WRHYL    E  +I TDH++L    T + 
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  --LNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFERAE 126
              N R  RW   ++D++ EI Y P  AN +ADALS        ++ +  P+ +D E   
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALS-------RIVDETEPIPKDSEDNS 854

Query: 127 IAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLV-----EKRRLVETGQGEDFSISSD 186
           I        + + Q+S+    + +++    ND  L+     E +R+ E       +I   
Sbjct: 855 I--------NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEE-------NIQLK 914

Query: 187 DGLIFEGRLCVL--EDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVAD 245
           DGL+   +  +L   D+     ++ + H     +HP    +   +   + W+ +++++ +
Sbjct: 915 DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 961

BLAST of Cmc10g0275191 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-15
Identity = 64/249 (25.70%), Postives = 116/249 (46.59%), Query Frame = 0

Query: 7   VAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE 66
           V Y S ++   + NY   + E+ A+I +LK WRHYL    E  +I TDH++L    T + 
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  --LNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFERAE 126
              N R  RW   ++D++ EI Y P  AN +ADALS        ++ +  P+ +D E   
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALS-------RIVDETEPIPKDSEDNS 854

Query: 127 IAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLV-----EKRRLVETGQGEDFSISSD 186
           I        + + Q+S+    + +++    ND  L+     E +R+ E       +I   
Sbjct: 855 I--------NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEE-------NIQLK 914

Query: 187 DGLIFEGRLCVL--EDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVAD 245
           DGL+   +  +L   D+     ++ + H     +HP    +   +   + W+ +++++ +
Sbjct: 915 DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 961

BLAST of Cmc10g0275191 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-15
Identity = 64/249 (25.70%), Postives = 116/249 (46.59%), Query Frame = 0

Query: 7   VAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYG--EKIQIYTDHKSLKYFFTQKE 66
           V Y S ++   + NY   + E+ A+I +LK WRHYL    E  +I TDH++L    T + 
Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNES 794

Query: 67  --LNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFERAE 126
              N R  RW   ++D++ EI Y P  AN +ADALS        ++ +  P+ +D E   
Sbjct: 795 EPENKRLARWQLFLQDFNFEINYRPGSANHIADALS-------RIVDETEPIPKDSEDNS 854

Query: 127 IAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLV-----EKRRLVETGQGEDFSISSD 186
           I        + + Q+S+    + +++    ND  L+     E +R+ E       +I   
Sbjct: 855 I--------NFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEE-------NIQLK 914

Query: 187 DGLIFEGRLCVL--EDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVAD 245
           DGL+   +  +L   D+     ++ + H     +HP    +   +   + W+ +++++ +
Sbjct: 915 DGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQE 961

BLAST of Cmc10g0275191 vs. ExPASy TrEMBL
Match: A0A5A7U8T4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001960 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 233/250 (93.20%), Postives = 240/250 (96.00%), Query Frame = 0

Query: 1   MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
           MQQG+VVAYASRQLKSHEQNYPTH+LELAAV+FALKIWRHYLYGEKIQI TDHKSLKYFF
Sbjct: 598 MQQGRVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIITDHKSLKYFF 657

Query: 61  TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
           TQKELNMRQRRWLEL+KDYDCE+LYHP KANVVADALS KVAHSAALITKQAPLLRDFER
Sbjct: 658 TQKELNMRQRRWLELVKDYDCEMLYHPGKANVVADALSRKVAHSAALITKQAPLLRDFER 717

Query: 121 AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
           AEIAVSVGEVTSQLAQLSVQPTLRQ+IIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL
Sbjct: 718 AEIAVSVGEVTSQLAQLSVQPTLRQRIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 777

Query: 181 IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
            FEGRLCV +DSA KTELL E HSSPFTMHP STKMYQDLRSVYWWRNMKREVADFVSRC
Sbjct: 778 TFEGRLCVPKDSAIKTELLTEIHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRC 837

Query: 241 LVCQQVKTPR 251
           LVCQQVK PR
Sbjct: 838 LVCQQVKAPR 847

BLAST of Cmc10g0275191 vs. ExPASy TrEMBL
Match: A0A5A7V646 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1337G00030 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 2.7e-127
Identity = 231/250 (92.40%), Postives = 238/250 (95.20%), Query Frame = 0

Query: 1    MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
            MQQGKVVAYASRQLK+HEQNYPTH+LELAAV+FALKIWRHYLYGEKIQIYTDHKSLKYFF
Sbjct: 903  MQQGKVVAYASRQLKTHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFF 962

Query: 61   TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
            TQKELNMRQRRWLEL+KDYDCEILYHP KANVVADALS KVAHSAALITKQ PLLRDFER
Sbjct: 963  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFER 1022

Query: 121  AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
            AEI VSVGEVT+QLAQLSVQPTLRQKII AQLNDPYL EKRR+VETGQGEDFSISSDDGL
Sbjct: 1023 AEITVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLAEKRRMVETGQGEDFSISSDDGL 1082

Query: 181  IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
            +FEGRLCV EDSA KTELL EAHSSPFTMHP STKMYQDLRSVYWWR MKREVADFVSRC
Sbjct: 1083 MFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKREVADFVSRC 1142

Query: 241  LVCQQVKTPR 251
            LVCQQVK PR
Sbjct: 1143 LVCQQVKAPR 1152

BLAST of Cmc10g0275191 vs. ExPASy TrEMBL
Match: A0A5A7TVN9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00750 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 4.6e-127
Identity = 231/250 (92.40%), Postives = 238/250 (95.20%), Query Frame = 0

Query: 1   MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
           MQQGKVVAYASRQLK HEQNYPTH+LELAAV+FALKIWRHYLYGEKIQIYTDHKSLKYFF
Sbjct: 441 MQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFF 500

Query: 61  TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
           TQKELNMRQRRWLEL+KDYDCEILYHP KANVVAD+LS KVAHSAALITKQ PLLRDFER
Sbjct: 501 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADSLSRKVAHSAALITKQTPLLRDFER 560

Query: 121 AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
           AEIAVSVGEVT+QLAQLSVQPTLRQKII AQLNDPYL EKRR+VETGQGEDFSISSDDGL
Sbjct: 561 AEIAVSVGEVTAQLAQLSVQPTLRQKIIAAQLNDPYLAEKRRMVETGQGEDFSISSDDGL 620

Query: 181 IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
           +FEGRLCV EDSA KTELL EAHSSPFTMHP STKMYQDLRSVYWWR MKREVADFVSRC
Sbjct: 621 MFEGRLCVPEDSAVKTELLTEAHSSPFTMHPGSTKMYQDLRSVYWWRGMKREVADFVSRC 680

Query: 241 LVCQQVKTPR 251
           LVCQQVK PR
Sbjct: 681 LVCQQVKAPR 690

BLAST of Cmc10g0275191 vs. ExPASy TrEMBL
Match: A0A5A7SVA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold346G00290 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 4.6e-127
Identity = 231/250 (92.40%), Postives = 239/250 (95.60%), Query Frame = 0

Query: 1    MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
            MQQGKVVAYASRQLK HEQNYPTH+LELAAV+FALKIWRHYLYGEKIQIYTDHKSLKYFF
Sbjct: 837  MQQGKVVAYASRQLKIHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFF 896

Query: 61   TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
            TQKELNMRQRRWLEL+KDYDCEILYHP KANVVADALS KVAHSAALITKQ PLLRDFER
Sbjct: 897  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSAALITKQTPLLRDFER 956

Query: 121  AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
            AEIAVSVGEVT+QLAQLSVQPTLRQKIIVAQL DPYLVEKRR+VETGQGE+FSISSDDGL
Sbjct: 957  AEIAVSVGEVTAQLAQLSVQPTLRQKIIVAQLEDPYLVEKRRMVETGQGENFSISSDDGL 1016

Query: 181  IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
            +FEGRLCV EDS  KTELL EAHSSPFTMHP STKMYQDLRSVYWWRNMKREVADF+SRC
Sbjct: 1017 MFEGRLCVPEDSVVKTELLSEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFISRC 1076

Query: 241  LVCQQVKTPR 251
            LVCQQVK PR
Sbjct: 1077 LVCQQVKAPR 1086

BLAST of Cmc10g0275191 vs. ExPASy TrEMBL
Match: A0A5A7UB12 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001260 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.1e-127
Identity = 231/250 (92.40%), Postives = 239/250 (95.60%), Query Frame = 0

Query: 1   MQQGKVVAYASRQLKSHEQNYPTHNLELAAVIFALKIWRHYLYGEKIQIYTDHKSLKYFF 60
           MQQGKVVAYASRQLKSHEQNYPTH+LELAAV+FALKIWRHYLYGEKIQIYTDHKSLKYFF
Sbjct: 572 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIYTDHKSLKYFF 631

Query: 61  TQKELNMRQRRWLELMKDYDCEILYHPSKANVVADALSSKVAHSAALITKQAPLLRDFER 120
           TQKELNMRQRRWLEL+KDYDCEILYHP KANVVADALS KVAHS ALITKQ PLL DFER
Sbjct: 632 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVAHSTALITKQTPLLIDFER 691

Query: 121 AEIAVSVGEVTSQLAQLSVQPTLRQKIIVAQLNDPYLVEKRRLVETGQGEDFSISSDDGL 180
           A IAVSVGE+TSQLAQLSVQPTLRQKI+VAQLNDPYLVEKRR+VETGQGE+FSISSDDGL
Sbjct: 692 AGIAVSVGEITSQLAQLSVQPTLRQKIVVAQLNDPYLVEKRRMVETGQGENFSISSDDGL 751

Query: 181 IFEGRLCVLEDSADKTELLIEAHSSPFTMHPRSTKMYQDLRSVYWWRNMKREVADFVSRC 240
           +FEGRLCV EDSA KTELL EAHSSPFTMHP STKMYQDLRSVYWWRNMKREVADFVSRC
Sbjct: 752 MFEGRLCVPEDSAVKTELLSEAHSSPFTMHPGSTKMYQDLRSVYWWRNMKREVADFVSRC 811

Query: 241 LVCQQVKTPR 251
           LVCQQVK PR
Sbjct: 812 LVCQQVKAPR 821

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050011.13.3e-12793.20pol protein [Cucumis melo var. makuwa][more]
KAA0063098.15.6e-12792.40pol protein [Cucumis melo var. makuwa][more]
KAA0045309.19.6e-12792.40pol protein [Cucumis melo var. makuwa][more]
KAA0035204.19.6e-12792.40reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0051386.11.3e-12692.40putative Retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q8I7P99.3e-1644.09Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
Q9UR072.1e-1525.70Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT412.1e-1525.70Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT342.1e-1525.70Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
P0CT352.1e-1525.70Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5A7U8T41.6e-12793.20Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001960 PE... [more]
A0A5A7V6462.7e-12792.40Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... [more]
A0A5A7TVN94.6e-12792.40Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31... [more]
A0A5A7SVA84.6e-12792.40Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34... [more]
A0A5A7UB126.1e-12792.40Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.340.70coord: 155..247
e-value: 3.7E-16
score: 61.1
NoneNo IPR availableGENE3D3.10.20.370coord: 2..50
e-value: 6.8E-6
score: 28.0
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 1..100
NoneNo IPR availablePANTHERPTHR24559:SF355PROTEIN, PUTATIVE-RELATEDcoord: 1..100
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 2..98
e-value: 3.11584E-50
score: 158.81
IPR041373Reverse transcriptase, RNase H-like domainPFAMPF17917RT_RNaseHcoord: 5..79
e-value: 6.3E-27
score: 93.9
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 195..248
e-value: 2.0E-15
score: 56.6
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0275191.1Cmc10g0275191.1mRNA