Cmc10g0275111 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0275111
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr10: 8873137 .. 8873861 (-)
RNA-Seq ExpressionCmc10g0275111
SyntenyCmc10g0275111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACTTTCCGCAACTACTTTAATCTTAAAGTTTTTGGTTGTGCATGCTTTGCTTCTACATCCTCAAGAACACACTAAACTTGAACTGTGTACATGCCTCTATTGCTTTCTTGGCTATGGCACAAAACATAAAGGTTTTCGTTGTTGGGATACTCTTTCTAATAGAATTCGTATATCTCAACATGTCACATTTTGGGAGCATACTATGTTCTCTCGTTTGTCCTCTTTCCACACATCCTTTTTAAGTTCTCATCCTTTCTTTAGTGATACGTCTGTTGAACTCTTTCCTCTTTCTAAGTCCACTCTTAATACTAAGCTTTCTCAATCTGTTCCTTCTCCTACAAACTCGGACCATCCATCTGTCTCCAATGATGTTCTTAAACCTACTCCAGATACTCATCTTCGTCGTTCTACTCAAGTAAGGGAATCTCCCATCCATCTCCATGATTATCACTGTTTTTCCACTATTGTTTTTCTTGTTGAACTCACCTCTTATCAAGAGGCGAGTATTGATGGCAGAAAGTAATGAATGATGAATTGCAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGATTTACCTCTCGGTAAAAGATCAATTGGATGCAAGTGGATTTACAAAATCAAAACTCACTCTGATGACACTATTAAGCGTTCACAAGAATATGGAATTTATTATGAAGAAACATTTGCTCATGTGGCTCGAATGACATTTGTTTGA

mRNA sequence

ATGGTACTTTCCGCAACTACTTTAATCTTAAAGTTTTTGGTTGTGCATGCTTTGCTTCTACATCCTCAAGAACACACTAAACTTGAACTGTGTACATGCCTCTATTGCTTTCTTGGCTATGGCACAAAACATAAAGGTTTTCGTTGTTGGGATACTCTTTCTAATAGAATTCGTATATCTCAACATGTCACATTTTGGGAGCATACTATGTTCTCTCGTTTGTCCTCTTTCCACACATCCTTTTTAAGTTCTCATCCTTTCTTTAGTGATACGTCTGTTGAACTCTTTCCTCTTTCTAAGTCCACTCTTAATACTAAGCTTTCTCAATCTGTTCCTTCTCCTACAAACTCGGACCATCCATCTGTCTCCAATGATGTTCTTAAACCTACTCCAGATACTCATCTTCGTCGTTCTACTCAAAAAGTAATGAATGATGAATTGCAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGATTTACCTCTCGGTAAAAGATCAATTGGATGCAAGTGGATTTACAAAATCAAAACTCACTCTGATGACACTATTAAGCGTTCACAAGAATATGGAATTTATTATGAAGAAACATTTGCTCATGTGGCTCGAATGACATTTGTTTGA

Coding sequence (CDS)

ATGGTACTTTCCGCAACTACTTTAATCTTAAAGTTTTTGGTTGTGCATGCTTTGCTTCTACATCCTCAAGAACACACTAAACTTGAACTGTGTACATGCCTCTATTGCTTTCTTGGCTATGGCACAAAACATAAAGGTTTTCGTTGTTGGGATACTCTTTCTAATAGAATTCGTATATCTCAACATGTCACATTTTGGGAGCATACTATGTTCTCTCGTTTGTCCTCTTTCCACACATCCTTTTTAAGTTCTCATCCTTTCTTTAGTGATACGTCTGTTGAACTCTTTCCTCTTTCTAAGTCCACTCTTAATACTAAGCTTTCTCAATCTGTTCCTTCTCCTACAAACTCGGACCATCCATCTGTCTCCAATGATGTTCTTAAACCTACTCCAGATACTCATCTTCGTCGTTCTACTCAAAAAGTAATGAATGATGAATTGCAGGCTCTTGAAAAGACGCACACTTGGGACTATGTTGATTTACCTCTCGGTAAAAGATCAATTGGATGCAAGTGGATTTACAAAATCAAAACTCACTCTGATGACACTATTAAGCGTTCACAAGAATATGGAATTTATTATGAAGAAACATTTGCTCATGTGGCTCGAATGACATTTGTTTGA

Protein sequence

MVLSATTLILKFLVVHALLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSFHTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRRSTQKVMNDELQALEKTHTWDYVDLPLGKRSIGCKWIYKIKTHSDDTIKRSQEYGIYYEETFAHVARMTFV
Homology
BLAST of Cmc10g0275111 vs. NCBI nr
Match: KAA0041341.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 4.0e-70
Identity = 144/214 (67.29%), Postives = 163/214 (76.17%), Query Frame = 0

Query: 12  FLVVHALLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMF 71
           F   + +LLHP EHTKLE    L CFLGYGT+HKGFRCWD LSNR+ IS+HVTFWEHTMF
Sbjct: 418 FGCAYFVLLHPNEHTKLEPHARLCCFLGYGTEHKGFRCWDPLSNRLHISRHVTFWEHTMF 477

Query: 72  SRLSSFHTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTP 131
           SRLSSFH+SF S  PFF+DTSVELFPLS+STL+T+L+QS P+  NS+  S+S+   +PTP
Sbjct: 478 SRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEPTP 537

Query: 132 DTHLRRST--------QKVMNDELQALEKTHTWDYVDLPLGKRSIGCKWIYKIKTHSDDT 191
           DT  RRST        QK MNDELQAL+K HTWDYVDLP GK+ IGCKWIYKIKTHSDDT
Sbjct: 538 DTPPRRSTQASTDPLWQKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSDDT 597

Query: 192 IKR----------SQEYGIYYEETFAHVARMTFV 208
           I+            QEYGI YEETFAHVARMT V
Sbjct: 598 IEHYKARFVAKGYLQEYGIDYEETFAHVARMTSV 631

BLAST of Cmc10g0275111 vs. NCBI nr
Match: KAA0045541.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK28851.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 274.2 bits (700), Expect = 8.9e-70
Identity = 142/208 (68.27%), Postives = 162/208 (77.88%), Query Frame = 0

Query: 18  LLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSF 77
           +LLHP EHTKLE    LYCFLGYGT+HKGFRCWD LSNR+RIS+HVTFWEH MFSRLSSF
Sbjct: 261 VLLHPHEHTKLEPRARLYCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHIMFSRLSSF 320

Query: 78  HTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRR 137
           H+SF S  P F+DTSVELFPLS+STL+ +L+QS P+  NS+  SVS+D  +PTPDT  RR
Sbjct: 321 HSSFSSPQPLFTDTSVELFPLSESTLDIELTQSAPTSANSNQSSVSDDGPEPTPDTPPRR 380

Query: 138 ST--------QKVMNDELQALEKTHTWDYVDLPLGKRSIGCKWIYKIKTHSDDTIKR--- 197
           ST        QK MNDELQAL+KT+TWDYVDLP  +R IGCKWIYKIKTHSDDTI+R   
Sbjct: 381 STRVSTDPLWQKAMNDELQALDKTYTWDYVDLPPDERPIGCKWIYKIKTHSDDTIERYKA 440

Query: 198 -------SQEYGIYYEETFAHVARMTFV 208
                  SQ+YGI YEETFA VARMT +
Sbjct: 441 RLIAKGYSQKYGIDYEETFAPVARMTSI 468

BLAST of Cmc10g0275111 vs. NCBI nr
Match: KAA0031710.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 1.2e-66
Identity = 142/236 (60.17%), Postives = 157/236 (66.53%), Query Frame = 0

Query: 18  LLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSF 77
           +LLHP EHTKLE   CL CFLGYGT+HKGFRCWD LSNR+RIS+HV FWEHTMFSRLSSF
Sbjct: 642 VLLHPHEHTKLEPRACLCCFLGYGTEHKGFRCWDPLSNRLRISRHVPFWEHTMFSRLSSF 701

Query: 78  HTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRR 137
           HTSF S  PFF+DTS++LFP S+S L  +L+QS P+   SD  S+S+   +PTPDT  RR
Sbjct: 702 HTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSATSDQSSISDGSPEPTPDTPPRR 761

Query: 138 ST------------------------------------QKVMNDELQALEKTHTWDYVDL 197
           ST                                    QK MNDELQALEKTHTWDYVDL
Sbjct: 762 STRVRELPIHLQDYHCFSTIISLVEPTSYQEASTNPLWQKAMNDELQALEKTHTWDYVDL 821

Query: 198 PLGKRSIGCKWIYKIKTHSDDTIKR----------SQEYGIYYEETFAHVARMTFV 208
           P GKR IGCKWIYKIKTHSD TI+R          SQEYGI YEE FA VARMT V
Sbjct: 822 PPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIVYEEKFALVARMTSV 877

BLAST of Cmc10g0275111 vs. NCBI nr
Match: KAA0051863.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 261.2 bits (666), Expect = 7.8e-66
Identity = 141/236 (59.75%), Postives = 158/236 (66.95%), Query Frame = 0

Query: 18  LLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSF 77
           +LLHP EHTKLE C  L CFLGYGT+HKGFRCWD LSNR+RIS+HVTFWEHTMFSRLSSF
Sbjct: 451 VLLHPHEHTKLEPCARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSF 510

Query: 78  HTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRR 137
           HTSF S  PFF+DTS++LFP S+S L  +L+Q  P+   SD  S+S+   +PT DT  RR
Sbjct: 511 HTSFSSPQPFFTDTSIDLFPPSESPLGNELAQFAPTSAISDQSSISDGSPEPTSDTPPRR 570

Query: 138 ST------------------------------------QKVMNDELQALEKTHTWDYVDL 197
           ST                                    QK MNDELQALEKTHTWDYVDL
Sbjct: 571 STRVREPPIHLQDYHCFSTIISLVEPTSYQEANTNPLWQKAMNDELQALEKTHTWDYVDL 630

Query: 198 PLGKRSIGCKWIYKIKTHSDDTIKR----------SQEYGIYYEETFAHVARMTFV 208
           P GKR IGCKWIYKIKTHS+ TI+R          SQEYGI YEETFA+VARMT V
Sbjct: 631 PPGKRPIGCKWIYKIKTHSNGTIERYKARLVAKGYSQEYGIDYEETFAYVARMTSV 686

BLAST of Cmc10g0275111 vs. NCBI nr
Match: KAA0050251.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 261.2 bits (666), Expect = 7.8e-66
Identity = 142/236 (60.17%), Postives = 157/236 (66.53%), Query Frame = 0

Query: 18  LLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSF 77
           +LLHP EHTKLE    L CFLGYGT+HKGF CWD LSNR+RIS+HVTFWEHTMFSRLSSF
Sbjct: 523 VLLHPHEHTKLEPRARLCCFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSF 582

Query: 78  HTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRR 137
           HTSF S  PFF+DTS++LFP S+S L  +L+QS P+   SD  S+ +D  +PTPDT  RR
Sbjct: 583 HTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEPTPDTPPRR 642

Query: 138 ST------------------------------------QKVMNDELQALEKTHTWDYVDL 197
           ST                                    QK MNDELQALEKTHTWDYVDL
Sbjct: 643 STRVREPPIHLQDYHCFSTIISLVELTSYQEASTDPLWQKAMNDELQALEKTHTWDYVDL 702

Query: 198 PLGKRSIGCKWIYKIKTHSDDTIKR----------SQEYGIYYEETFAHVARMTFV 208
           P GKR IGCKWIYKIKTHSD TI+R          SQEYGI YEETFA VARMT V
Sbjct: 703 PPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSV 758

BLAST of Cmc10g0275111 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-08
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 0

Query: 141 KVMNDELQALEKTHTWDYVDLPLGKRSIGCKWIYKIKTHSDDTIKR----------SQEY 200
           + M +EL AL +  TW  V  P+ +  +GCKW++K K HSD T+ R           QE 
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 201 GIYYEETFAHVAR 204
           GIY+ ET++ V R
Sbjct: 102 GIYFVETYSPVVR 114

BLAST of Cmc10g0275111 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-07
Identity = 57/243 (23.46%), Postives = 98/243 (40.33%), Query Frame = 0

Query: 23  QEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSFHTSFL 82
           ++ TKL+  +    F+GYG +  G+R WD +  ++  S+ V F E  + +          
Sbjct: 662 EQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKN 721

Query: 83  SSHP-FFSDTSVELFPLSKSTLNTKLSQSVPSP--------------TNSDHPSVSNDVL 142
              P F +  S    P S  +   ++S+    P                 +HP+   +  
Sbjct: 722 GIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQH 781

Query: 143 KP-----TPDTHLRR--STQ--------------------------KVMNDELQALEKTH 202
           +P      P    RR  ST+                          K M +E+++L+K  
Sbjct: 782 QPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNG 841

Query: 203 TWDYVDLPLGKRSIGCKWIYKIKTHSDDTIKR----------SQEYGIYYEETFAHVARM 208
           T+  V+LP GKR + CKW++K+K   D  + R           Q+ GI ++E F+ V +M
Sbjct: 842 TYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKM 901

BLAST of Cmc10g0275111 vs. ExPASy TrEMBL
Match: A0A5A7TI53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003520 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.9e-70
Identity = 144/214 (67.29%), Postives = 163/214 (76.17%), Query Frame = 0

Query: 12  FLVVHALLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMF 71
           F   + +LLHP EHTKLE    L CFLGYGT+HKGFRCWD LSNR+ IS+HVTFWEHTMF
Sbjct: 418 FGCAYFVLLHPNEHTKLEPHARLCCFLGYGTEHKGFRCWDPLSNRLHISRHVTFWEHTMF 477

Query: 72  SRLSSFHTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTP 131
           SRLSSFH+SF S  PFF+DTSVELFPLS+STL+T+L+QS P+  NS+  S+S+   +PTP
Sbjct: 478 SRLSSFHSSFSSPQPFFTDTSVELFPLSESTLDTELAQSAPTSANSNQSSISDYGPEPTP 537

Query: 132 DTHLRRST--------QKVMNDELQALEKTHTWDYVDLPLGKRSIGCKWIYKIKTHSDDT 191
           DT  RRST        QK MNDELQAL+K HTWDYVDLP GK+ IGCKWIYKIKTHSDDT
Sbjct: 538 DTPPRRSTQASTDPLWQKAMNDELQALDKIHTWDYVDLPPGKKLIGCKWIYKIKTHSDDT 597

Query: 192 IKR----------SQEYGIYYEETFAHVARMTFV 208
           I+            QEYGI YEETFAHVARMT V
Sbjct: 598 IEHYKARFVAKGYLQEYGIDYEETFAHVARMTSV 631

BLAST of Cmc10g0275111 vs. ExPASy TrEMBL
Match: A0A5D3DZA5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00600 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.3e-70
Identity = 142/208 (68.27%), Postives = 162/208 (77.88%), Query Frame = 0

Query: 18  LLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSF 77
           +LLHP EHTKLE    LYCFLGYGT+HKGFRCWD LSNR+RIS+HVTFWEH MFSRLSSF
Sbjct: 261 VLLHPHEHTKLEPRARLYCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHIMFSRLSSF 320

Query: 78  HTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRR 137
           H+SF S  P F+DTSVELFPLS+STL+ +L+QS P+  NS+  SVS+D  +PTPDT  RR
Sbjct: 321 HSSFSSPQPLFTDTSVELFPLSESTLDIELTQSAPTSANSNQSSVSDDGPEPTPDTPPRR 380

Query: 138 ST--------QKVMNDELQALEKTHTWDYVDLPLGKRSIGCKWIYKIKTHSDDTIKR--- 197
           ST        QK MNDELQAL+KT+TWDYVDLP  +R IGCKWIYKIKTHSDDTI+R   
Sbjct: 381 STRVSTDPLWQKAMNDELQALDKTYTWDYVDLPPDERPIGCKWIYKIKTHSDDTIERYKA 440

Query: 198 -------SQEYGIYYEETFAHVARMTFV 208
                  SQ+YGI YEETFA VARMT +
Sbjct: 441 RLIAKGYSQKYGIDYEETFAPVARMTSI 468

BLAST of Cmc10g0275111 vs. ExPASy TrEMBL
Match: A0A5A7SLT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004960 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.8e-67
Identity = 142/236 (60.17%), Postives = 157/236 (66.53%), Query Frame = 0

Query: 18  LLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSF 77
           +LLHP EHTKLE   CL CFLGYGT+HKGFRCWD LSNR+RIS+HV FWEHTMFSRLSSF
Sbjct: 642 VLLHPHEHTKLEPRACLCCFLGYGTEHKGFRCWDPLSNRLRISRHVPFWEHTMFSRLSSF 701

Query: 78  HTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRR 137
           HTSF S  PFF+DTS++LFP S+S L  +L+QS P+   SD  S+S+   +PTPDT  RR
Sbjct: 702 HTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSATSDQSSISDGSPEPTPDTPPRR 761

Query: 138 ST------------------------------------QKVMNDELQALEKTHTWDYVDL 197
           ST                                    QK MNDELQALEKTHTWDYVDL
Sbjct: 762 STRVRELPIHLQDYHCFSTIISLVEPTSYQEASTNPLWQKAMNDELQALEKTHTWDYVDL 821

Query: 198 PLGKRSIGCKWIYKIKTHSDDTIKR----------SQEYGIYYEETFAHVARMTFV 208
           P GKR IGCKWIYKIKTHSD TI+R          SQEYGI YEE FA VARMT V
Sbjct: 822 PPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIVYEEKFALVARMTSV 877

BLAST of Cmc10g0275111 vs. ExPASy TrEMBL
Match: A0A5A7U7G4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002990 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.8e-66
Identity = 141/236 (59.75%), Postives = 158/236 (66.95%), Query Frame = 0

Query: 18  LLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSF 77
           +LLHP EHTKLE C  L CFLGYGT+HKGFRCWD LSNR+RIS+HVTFWEHTMFSRLSSF
Sbjct: 451 VLLHPHEHTKLEPCARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSF 510

Query: 78  HTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRR 137
           HTSF S  PFF+DTS++LFP S+S L  +L+Q  P+   SD  S+S+   +PT DT  RR
Sbjct: 511 HTSFSSPQPFFTDTSIDLFPPSESPLGNELAQFAPTSAISDQSSISDGSPEPTSDTPPRR 570

Query: 138 ST------------------------------------QKVMNDELQALEKTHTWDYVDL 197
           ST                                    QK MNDELQALEKTHTWDYVDL
Sbjct: 571 STRVREPPIHLQDYHCFSTIISLVEPTSYQEANTNPLWQKAMNDELQALEKTHTWDYVDL 630

Query: 198 PLGKRSIGCKWIYKIKTHSDDTIKR----------SQEYGIYYEETFAHVARMTFV 208
           P GKR IGCKWIYKIKTHS+ TI+R          SQEYGI YEETFA+VARMT V
Sbjct: 631 PPGKRPIGCKWIYKIKTHSNGTIERYKARLVAKGYSQEYGIDYEETFAYVARMTSV 686

BLAST of Cmc10g0275111 vs. ExPASy TrEMBL
Match: A0A5A7U9P9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00970 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.8e-66
Identity = 142/236 (60.17%), Postives = 157/236 (66.53%), Query Frame = 0

Query: 18  LLLHPQEHTKLELCTCLYCFLGYGTKHKGFRCWDTLSNRIRISQHVTFWEHTMFSRLSSF 77
           +LLHP EHTKLE    L CFLGYGT+HKGF CWD LSNR+RIS+HVTFWEHTMFSRLSSF
Sbjct: 523 VLLHPHEHTKLEPRARLCCFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSF 582

Query: 78  HTSFLSSHPFFSDTSVELFPLSKSTLNTKLSQSVPSPTNSDHPSVSNDVLKPTPDTHLRR 137
           HTSF S  PFF+DTS++LFP S+S L  +L+QS P+   SD  S+ +D  +PTPDT  RR
Sbjct: 583 HTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEPTPDTPPRR 642

Query: 138 ST------------------------------------QKVMNDELQALEKTHTWDYVDL 197
           ST                                    QK MNDELQALEKTHTWDYVDL
Sbjct: 643 STRVREPPIHLQDYHCFSTIISLVELTSYQEASTDPLWQKAMNDELQALEKTHTWDYVDL 702

Query: 198 PLGKRSIGCKWIYKIKTHSDDTIKR----------SQEYGIYYEETFAHVARMTFV 208
           P GKR IGCKWIYKIKTHSD TI+R          SQEYGI YEETFA VARMT V
Sbjct: 703 PPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSV 758

BLAST of Cmc10g0275111 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 0

Query: 143 MNDELQALEKTHTWDYVDLPLGKRSIGCKWIYKIKTHSDDTIKR----------SQEYGI 202
           M+DE+ A+E THTW+   LP  K+ IGCKW+YKIK +SD TI+R          +Q+ GI
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161

Query: 203 YYEETFAHVARMTFV 208
            + ETF+ V ++T V
Sbjct: 162 DFIETFSPVCKLTSV 176

BLAST of Cmc10g0275111 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 61.6 bits (148), Expect = 8.5e-10
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 0

Query: 141 KVMNDELQALEKTHTWDYVDLPLGKRSIGCKWIYKIKTHSDDTIKR----------SQEY 200
           + M +EL AL +  TW  V  P+ +  +GCKW++K K HSD T+ R           QE 
Sbjct: 42  QAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEE 101

Query: 201 GIYYEETFAHVAR 204
           GIY+ ET++ V R
Sbjct: 102 GIYFVETYSPVVR 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041341.14.0e-7067.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0045541.18.9e-7068.27Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0031710.11.2e-6660.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0051863.17.8e-6659.75Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0050251.17.8e-6660.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
P925201.2e-0839.73Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
P109782.2e-0723.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5A7TI531.9e-7067.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3DZA54.3e-7068.27Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7SLT85.8e-6760.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7U7G43.8e-6659.75Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7U9P93.8e-6660.17Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
AT4G23160.16.3e-1346.67cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.18.5e-1039.73Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0275111.1Cmc10g0275111.1mRNA