Cmc10g0275101 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0275101
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr10: 8872489 .. 8872836 (-)
RNA-Seq Expression	Cmc10g0275101
Synteny	Cmc10g0275101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTATTACTGGTAATGATCCAGAGGCCATATCCGACCTACAAAATTATCTTGGTCAACATTTTGAGATGAAAGACCTTGGATTTTTCAACTACTTTCTTGGCCTTGAAGTCTCTCGGCTCTCAGATGGGTATTTGTTATCTCAAGTAAAATATCCCTCTAATCTTTTAGCCCGCTCAGGAATCACTAACTCCAACACAACTTCGACACTGTTAGATCCCAATGTCCATCTAACCCCTTTTGATGGTGTTCCTCTTGAAGATGTGAGTTTATATTGGGAATTTGTTGGCAGTCTGATCTATCTAAGAGTAACTTATCTAGACATTGATATGTTGCTTATATTGTAG

mRNA sequence

ATGATTATTACTGGTAATGATCCAGAGGCCATATCCGACCTACAAAATTATCTTGGTCAACATTTTGAGATGAAAGACCTTGGATTTTTCAACTACTTTCTTGGCCTTGAAGTCTCTCGGCTCTCAGATGGGTATTTGTTATCTCAAGTAAAATATCCCTCTAATCTTTTAGCCCGCTCAGGAATCACTAACTCCAACACAACTTCGACACTGTTAGATCCCAATGTCCATCTAACCCCTTTTGATGGTGTTCCTCTTGAAGATGTGAGTTTATATTGGGAATTTGTTGGCAGTCTGATCTATCTAAGAGTAACTTATCTAGACATTGATATGTTGCTTATATTGTAG

Coding sequence (CDS)

ATGATTATTACTGGTAATGATCCAGAGGCCATATCCGACCTACAAAATTATCTTGGTCAACATTTTGAGATGAAAGACCTTGGATTTTTCAACTACTTTCTTGGCCTTGAAGTCTCTCGGCTCTCAGATGGGTATTTGTTATCTCAAGTAAAATATCCCTCTAATCTTTTAGCCCGCTCAGGAATCACTAACTCCAACACAACTTCGACACTGTTAGATCCCAATGTCCATCTAACCCCTTTTGATGGTGTTCCTCTTGAAGATGTGAGTTTATATTGGGAATTTGTTGGCAGTCTGATCTATCTAAGAGTAACTTATCTAGACATTGATATGTTGCTTATATTGTAG

Protein sequence

MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARSGITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDIDMLLIL

Homology

[Close]

BLAST of Cmc10g0275101 vs. NCBI nr
Match: KAA0068118.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-42
Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDP+AISDLQ+YLGQHFE+KDLG  NYFLGLEVSRLSDGYLLSQ KY S+LLARS
Sbjct: 72  MIITGNDPQAISDLQHYLGQHFEIKDLGSLNYFLGLEVSRLSDGYLLSQAKYASDLLARS 131

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           GIT+SNT ST LDPNVHLTP+DGVPLEDVSLY + VGSLIYL +T LDI
Sbjct: 132 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLIMTRLDI 180

[Close]

BLAST of Cmc10g0275101 vs. NCBI nr
Match: KAA0037359.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ97547.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-42
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS
Sbjct: 166 MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 225

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTY 107
           GITNSNTTSTLLDPNVHLTPFDGVPLED  +  + +     LR+ +
Sbjct: 226 GITNSNTTSTLLDPNVHLTPFDGVPLEDFIVAPQTIHFTTLLRILH 271

[Close]

BLAST of Cmc10g0275101 vs. NCBI nr
Match: KAA0058546.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 9.7e-42
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDP+AISDLQ+YLGQHFEMKDLG  NYFLGLEVSR SDGYLLSQ KY S+LLARS
Sbjct: 323 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 382

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           GIT+SNTTST LDPNVHLTP+DGVPL+DVSLY + VGSLIYL VT  DI
Sbjct: 383 GITDSNTTSTPLDPNVHLTPYDGVPLKDVSLYRQLVGSLIYLTVTRPDI 431

[Close]

BLAST of Cmc10g0275101 vs. NCBI nr
Match: KAA0054647.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDP+AISDLQ+YLGQHFEMKDLG  NYFLGLEVSR SDGYLLSQ KY S+LLARS
Sbjct: 862 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYTSDLLARS 921

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           GIT+SNT ST LDPNVHLTP+DGVPLEDVSLY + VGSLIYL VT  DI
Sbjct: 922 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDI 970

[Close]

BLAST of Cmc10g0275101 vs. NCBI nr
Match: KAA0052097.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDP+AISDLQ+YLGQHFEMKDLG  NYFLGLEVSR SDGYLLSQ KY S+LLARS
Sbjct: 874 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 933

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           GIT+SNT ST LDPNVHLTP+DGVPLEDVSLY + VGSLIYL VT  DI
Sbjct: 934 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDI 982

[Close]

BLAST of Cmc10g0275101 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-06
Identity = 35/109 (32.11%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           +++TG+    ++ L   L   F MKDLG  +YFLG+++     G  LSQ KY   +L  +
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           G+ +    ST L   ++ +        D S +   VG+L YL +T  DI
Sbjct: 70  GMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDI 117

[Close]

BLAST of Cmc10g0275101 vs. ExPASy TrEMBL
Match: A0A5A7T7L0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00690 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS
Sbjct: 166 MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 225

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTY 107
           GITNSNTTSTLLDPNVHLTPFDGVPLED  +  + +     LR+ +
Sbjct: 226 GITNSNTTSTLLDPNVHLTPFDGVPLEDFIVAPQTIHFTTLLRILH 271

[Close]

BLAST of Cmc10g0275101 vs. ExPASy TrEMBL
Match: A0A5A7VJV7 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00780 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDP+AISDLQ+YLGQHFE+KDLG  NYFLGLEVSRLSDGYLLSQ KY S+LLARS
Sbjct: 72  MIITGNDPQAISDLQHYLGQHFEIKDLGSLNYFLGLEVSRLSDGYLLSQAKYASDLLARS 131

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           GIT+SNT ST LDPNVHLTP+DGVPLEDVSLY + VGSLIYL +T LDI
Sbjct: 132 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLIMTRLDI 180

[Close]

BLAST of Cmc10g0275101 vs. ExPASy TrEMBL
Match: A0A5A7UWJ4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00130 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.7e-42
Identity = 91/109 (83.49%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDP+AISDLQ+YLGQHFEMKDLG  NYFLGLEVSR SDGYLLSQ KY S+LLARS
Sbjct: 323 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 382

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           GIT+SNTTST LDPNVHLTP+DGVPL+DVSLY + VGSLIYL VT  DI
Sbjct: 383 GITDSNTTSTPLDPNVHLTPYDGVPLKDVSLYRQLVGSLIYLTVTRPDI 431

[Close]

BLAST of Cmc10g0275101 vs. ExPASy TrEMBL
Match: A0A5A7UCC7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00790 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.2e-42
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDP+AISDLQ+YLGQHFEMKDLG  NYFLGLEVSR SDGYLLSQ KY S+LLARS
Sbjct: 874 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYASDLLARS 933

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           GIT+SNT ST LDPNVHLTP+DGVPLEDVSLY + VGSLIYL VT  DI
Sbjct: 934 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDI 982

[Close]

BLAST of Cmc10g0275101 vs. ExPASy TrEMBL
Match: A0A5A7UJ79 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004570 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.2e-42
Identity = 91/109 (83.49%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           MIITGNDP+AISDLQ+YLGQHFEMKDLG  NYFLGLEVSR SDGYLLSQ KY S+LLARS
Sbjct: 862 MIITGNDPQAISDLQHYLGQHFEMKDLGSLNYFLGLEVSRRSDGYLLSQAKYTSDLLARS 921

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           GIT+SNT ST LDPNVHLTP+DGVPLEDVSLY + VGSLIYL VT  DI
Sbjct: 922 GITDSNTASTPLDPNVHLTPYDGVPLEDVSLYRQLVGSLIYLTVTRPDI 970

[Close]

BLAST of Cmc10g0275101 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-14
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           +II  N+  A+ +L++ L   F+++DLG   YFLGLE++R + G  + Q KY  +LL  +
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           G+     +S  +DP+V  +   G    D   Y   +G L+YL++T LDI
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDI 395

[Close]

BLAST of Cmc10g0275101 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-08
Identity = 35/109 (32.11%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 1   MIITGNDPEAISDLQNYLGQHFEMKDLGFFNYFLGLEVSRLSDGYLLSQVKYPSNLLARS 60
           +++TG+    ++ L   L   F MKDLG  +YFLG+++     G  LSQ KY   +L  +
Sbjct: 10  ILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA 69

Query: 61  GITNSNTTSTLLDPNVHLTPFDGVPLEDVSLYWEFVGSLIYLRVTYLDI 110
           G+ +    ST L   ++ +        D S +   VG+L YL +T  DI
Sbjct: 70  GMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDI 117

The following BLAST results are available for this feature:

BLAST of Cmc10g0275101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068118.1	4.4e-42	83.49	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0037359.1	4.4e-42	84.91	putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ97547.1 putative m...	[more]
KAA0058546.1	9.7e-42	83.49	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0054647.1	1.3e-41	83.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0052097.1	1.3e-41	83.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc10g0275101 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92519	1.4e-06	32.11	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc10g0275101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7L0	2.1e-42	84.91	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VJV7	2.1e-42	83.49	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UWJ4	4.7e-42	83.49	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UCC7	6.2e-42	83.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UJ79	6.2e-42	83.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc10g0275101 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.4e-14	35.78	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.8e-08	32.11	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..70 e-value: 1.9E-11 score: 44.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0275101.1	Cmc10g0275101.1	mRNA