Cmc10g0274821 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0274821
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	SHSP domain-containing protein
Location	CMiso1.1chr10: 8628363 .. 8629283 (+)
RNA-Seq Expression	Cmc10g0274821
Synteny	Cmc10g0274821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCATTAAGTGTTAAAGCAAGAAAAGAAACTTAAGAAACAACTTAGATTATATTTATTCTCATTAAACACAACCAAACACTTATCGTTTTTACAAAGTTACAAACATTCACAAAACACATAAGCACAGCTCATTCTTCCATAGTATATTAAACAAACAGAGGCAGAGACAAAACCCAGAACTCAGTACTCAGGATGAACACTGTAAGGTTCAACCAGCGATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTCAGAACTCCATTCTCCATGTTGGCTTTCACCTCCTCAACTTTAGCATTCTCGGGCAGCCTAAATCTCCTCATGAACTTCCCACTGCTCCGTTCAATTCTATGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCCACTTCTACTTTCACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCGAAAGCAGAGGTTTCGCGAGCAGAGGAGGGAAGGTTGGCTAATGAGTTTGAAAAGGAGAAGCCTTCAAAGGGATCCCAAATGTCCAATGAGAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAATGAGAGCCATGGTAGTTGAATTAGAAGTTGGAAGTAAATCTGATCGAAAGAGAATGTTTTATAGAATTGGGAATTATCGTGTTGGATGATTTCTGGATGATGATCAACAGACGGGTTGGAGGGGATTTAAATAGGAAGCAACAGAAGATGGAAGTGGATTCGTGGGTTTTCTGGTATCTTCCTTTAGCTTCTTGTTATTCCATTTCTATAAGGTTCTACCACTTTCTTCGTGGACTTTGTC

mRNA sequence

TTTCATTAAGTGTTAAAGCAAGAAAAGAAACTTAAGAAACAACTTAGATTATATTTATTCTCATTAAACACAACCAAACACTTATCGTTTTTACAAAGTTACAAACATTCACAAAACACATAAGCACAGCTCATTCTTCCATAGTATATTAAACAAACAGAGGCAGAGACAAAACCCAGAACTCAGTACTCAGGATGAACACTGTAAGGTTCAACCAGCGATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTCAGAACTCCATTCTCCATGTTGGCTTTCACCTCCTCAACTTTAGCATTCTCGGGCAGCCTAAATCTCCTCATGAACTTCCCACTGCTCCGTTCAATTCTATGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCCACTTCTACTTTCACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCGAAAGCAGAGGTTTCGCGAGCAGAGGAGGGAAGGTTGGCTAATGAGTTTGAAAAGGAGAAGCCTTCAAAGGGATCCCAAATGTCCAATGAGAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAATGAGAGCCATGGTAGTTGAATTAGAAGTTGGAAGTAAATCTGATCGAAAGAGAATGTTTTATAGAATTGGGAATTATCGTGTTGGATGATTTCTGGATGATGATCAACAGACGGGTTGGAGGGGATTTAAATAGGAAGCAACAGAAGATGGAAGTGGATTCGTGGGTTTTCTGGTATCTTCCTTTAGCTTCTTGTTATTCCATTTCTATAAGGTTCTACCACTTTCTTCGTGGACTTTGTC

Coding sequence (CDS)

ATGTCAATGGACTTGATCTCAGGCTTCTTCTCTTCCATTTTAGGCACCGTCACAGTCAGAACTCCATTCTCCATGTTGGCTTTCACCTCCTCAACTTTAGCATTCTCGGGCAGCCTAAATCTCCTCATGAACTTCCCACTGCTCCGTTCAATTCTATGCCATTTGTCATTCTTCTCCTCCTGCTCTTTGCTCCTCTCTCCACTGATTTGCAAAACTCTGCCTTCTTCCACTTCTACTTTCACTTCTTCCTTCTTGATTCCGGGAAGATCAGCCTTGAAGATGTGGGCTTGTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCGAAAGCAGAGGTTTCGCGAGCAGAGGAGGGAAGGTTGGCTAATGAGTTTGAAAAGGAGAAGCCTTCAAAGGGATCCCAAATGTCCAATGAGAAGGGGTCGAAGACGTTGCTGCGGCGACCACCGAAAATGCTTGGAATGAGAGCCATGGTAGTTGAATTAGAAGTTGGAAGTAAATCTGATCGAAAGAGAATGTTTTATAGAATTGGGAATTATCGTGTTGGATGA

Protein sequence

MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRLANEFEKEKPSKGSQMSNEKGSKTLLRRPPKMLGMRAMVVELEVGSKSDRKRMFYRIGNYRVG

Homology

[Close]

BLAST of Cmc10g0274821 vs. NCBI nr
Match: VFQ82571.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-36
Identity = 103/157 (65.61%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 3   MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
           MDL SGFF+S LGTVTV TPFSM AFT S  AFSGS N   N PLLRS  CHLS FSS S
Sbjct: 1   MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60

Query: 63  LLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRLAN 122
           LLLSPLICK LPSSTSTFTSSF  PGRSAL  W  GVSFQS+R  A A+VS      +  
Sbjct: 61  LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVSLG----VLT 120

Query: 123 EFEKEKPSKGSQMSNEKGSKTLLR-RPPKMLGMRAMV 159
            FE   P KGSQ S E GS T LR RPPK LG+R ++
Sbjct: 121 AFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREIL 153

[Close]

BLAST of Cmc10g0274821 vs. NCBI nr
Match: KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-36
Identity = 100/148 (67.57%), Postives = 108/148 (72.97%), Query Frame = 0


Query: 7   SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLS 66
           +GFF+S  GTV V TPFS+ AFT S  AFSG+LNLL+NFPLLRS LCH+SF SS S  LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212

Query: 67  PLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRLANEFEK 126
           PLICK L SSTSTFTSSFLIPGRSALK  A GVSFQS RV  KAEVS  E     +E  K
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESD--PDEVGK 272

Query: 127 EKPSKGSQMSNEKGSKTLLRRPPKMLGM 155
            K   GSQ+S   GSK L RRPPK LGM
Sbjct: 273 GKSLNGSQISMANGSKMLFRRPPKKLGM 298

[Close]

BLAST of Cmc10g0274821 vs. NCBI nr
Match: BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-35
Identity = 104/154 (67.53%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 1   MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
           +SM   SGF +S LGTVTV TPFSMLAFT STLAFSGSLN  MN PLLRS  CHLSF SS
Sbjct: 20  ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79

Query: 61  CSLLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRL 120
            SLL  PLI  TLPSSTSTFTSSFL PGRSALK    GVSFQS R LAKA VSR+E   +
Sbjct: 80  FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---V 139

Query: 121 ANEFEKEKPSKGSQMSNEKGSKTLLRRPPKMLGM 155
           A   E++ PSKGSQ S  KGS TLLR    ++G+
Sbjct: 140 AGTRERKTPSKGSQKS-AKGSNTLLRLTSDIVGL 169

[Close]

BLAST of Cmc10g0274821 vs. NCBI nr
Match: KAB8079852.1 (hypothetical protein EE612_000127, partial [Oryza sativa])

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-33
Identity = 101/154 (65.58%), Postives = 109/154 (70.78%), Query Frame = 0


Query: 1   MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
           +SM   SG  +S LGTVTV TPFSMLAFT STLAFSGS N  MN PLLRS  CHLSF SS
Sbjct: 20  ISMAFTSGLLTSALGTVTVSTPFSMLAFTWSTLAFSGSRNRRMNCPLLRSTRCHLSFLSS 79

Query: 61  CSLLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRL 120
            SLL  PLI  TLPSSTSTFTSSF  PGRSALK    GVSFQS R LAKA VSR+E   +
Sbjct: 80  FSLLRCPLITSTLPSSTSTFTSSFFTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---V 139

Query: 121 ANEFEKEKPSKGSQMSNEKGSKTLLRRPPKMLGM 155
           A   E+  PSKGSQ S  KGS TLLR    ++G+
Sbjct: 140 AGTRERRTPSKGSQKS-AKGSNTLLRLTSDIVGL 169

[Close]

BLAST of Cmc10g0274821 vs. NCBI nr
Match: CAB3496390.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-33
Identity = 101/154 (65.58%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 3   MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
           M L SGF +S LGTVTV TPFSM A   S LAFSGSLNL  N PLLRS  CH SFFSS S
Sbjct: 1   MALTSGFLASSLGTVTVSTPFSMDALICSVLAFSGSLNLRRNLPLLRSTRCHWSFFSSRS 60

Query: 63  LLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEE---GR 122
           LL SPLI +TLPSS STFTSSF  PG SALK WA GVSFQSMR  A A VS + E    R
Sbjct: 61  LLRSPLIWRTLPSSISTFTSSFFSPGTSALKTWASGVSFQSMRAPANAAVSESVEMRGKR 120

Query: 123 LANEFEKEKPSKGSQMSNEKGSKTLLRRPPKMLG 154
           L       K  KGSQMS EKGS TLLRR   M+G
Sbjct: 121 LPLREPNGKSWKGSQMSREKGSNTLLRRISDMIG 154

[Close]

BLAST of Cmc10g0274821 vs. ExPASy TrEMBL
Match: A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.5e-79
Identity = 168/183 (91.80%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
           MSMDLISGFFSSILGT+TVRTPFSMLAFTSSTLAFSGSLNLLMNFP LRSILCHLSFFSS
Sbjct: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60

Query: 61  CSLLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRL 120
           CSLLLSPLICKTLPSSTST TSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEG L
Sbjct: 61  CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120

Query: 121 ANEFEKEKPSKGSQMSNEKGSKTLLRRPPKMLGMRAMVVELEVG-SKSDRKRMFYRIGNY 180
           A EFEK KPSKGSQMSNEKGSKTLLRRPPKMLG RAMVVE EVG S+ DRKR+F R GNY
Sbjct: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEVGRSRLDRKRVFCRSGNY 180

Query: 181 RVG 183
            VG
Sbjct: 181 LVG 183

[Close]

BLAST of Cmc10g0274821 vs. ExPASy TrEMBL
Match: A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 102/157 (64.97%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 3   MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
           M   SGFFSS LGTVTV TPFS+ AFTSS LAFSG  N   N PL RS  CHLSFFSSCS
Sbjct: 1   MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60

Query: 63  LLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEE-GRLA 122
           L+LSPLI + LPSSTSTFTSSFL PGRS L  WA GVSFQS  VL   +VSRA E G   
Sbjct: 61  LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAELGCTL 120

Query: 123 NEFEKEKPSKGSQMSNEKGSKTLLRRPPKMLGMRAMV 159
              E + PS GSQ S E GS TL+ R PK LG+  MV
Sbjct: 121 ERAEDKNPSNGSQTSRENGSNTLVFRLPKKLGISDMV 157

[Close]

BLAST of Cmc10g0274821 vs. ExPASy TrEMBL
Match: A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 9.4e-37
Identity = 103/157 (65.61%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 3   MDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCS 62
           MDL SGFF+S LGTVTV TPFSM AFT S  AFSGS N   N PLLRS  CHLS FSS S
Sbjct: 1   MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60

Query: 63  LLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRLAN 122
           LLLSPLICK LPSSTSTFTSSF  PGRSAL  W  GVSFQS+R  A A+VS      +  
Sbjct: 61  LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVSLG----VLT 120

Query: 123 EFEKEKPSKGSQMSNEKGSKTLLR-RPPKMLGMRAMV 159
            FE   P KGSQ S E GS T LR RPPK LG+R ++
Sbjct: 121 AFENGNPWKGSQKSRENGSGTWLRERPPKKLGIREIL 153

[Close]

BLAST of Cmc10g0274821 vs. ExPASy TrEMBL
Match: A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 9.4e-37
Identity = 100/148 (67.57%), Postives = 108/148 (72.97%), Query Frame = 0


Query: 7   SGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLS 66
           +GFF+S  GTV V TPFS+ AFT S  AFSG+LNLL+NFPLLRS LCH+SF SS S  LS
Sbjct: 153 TGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLS 212

Query: 67  PLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRLANEFEK 126
           PLICK L SSTSTFTSSFLIPGRSALK  A GVSFQS RV  KAEVS  E     +E  K
Sbjct: 213 PLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESD--PDEVGK 272

Query: 127 EKPSKGSQMSNEKGSKTLLRRPPKMLGM 155
            K   GSQ+S   GSK L RRPPK LGM
Sbjct: 273 GKSLNGSQISMANGSKMLFRRPPKKLGM 298

[Close]

BLAST of Cmc10g0274821 vs. ExPASy TrEMBL
Match: A0A0P0UXN9 (Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0136050 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 8.0e-36
Identity = 104/154 (67.53%), Postives = 113/154 (73.38%), Query Frame = 0


Query: 1   MSMDLISGFFSSILGTVTVRTPFSMLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSS 60
           +SM   SGF +S LGTVTV TPFSMLAFT STLAFSGSLN  MN PLLRS  CHLSF SS
Sbjct: 20  ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79

Query: 61  CSLLLSPLICKTLPSSTSTFTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGRL 120
            SLL  PLI  TLPSSTSTFTSSFL PGRSALK    GVSFQS R LAKA VSR+E   +
Sbjct: 80  FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---V 139

Query: 121 ANEFEKEKPSKGSQMSNEKGSKTLLRRPPKMLGM 155
           A   E++ PSKGSQ S  KGS TLLR    ++G+
Sbjct: 140 AGTRERKTPSKGSQKS-AKGSNTLLRLTSDIVGL 169

The following BLAST results are available for this feature:

BLAST of Cmc10g0274821 vs. NCBI nr


Match Name	E-value	Identity	Description
VFQ82571.1	2.0e-36	65.61	unnamed protein product [Cuscuta campestris]	[more]
KVI11914.1	2.0e-36	67.57	hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus]	[more]
BAS70261.1	1.7e-35	67.53	Os01g0136050, partial [Oryza sativa Japonica Group]	[more]
KAB8079852.1	1.5e-33	65.58	hypothetical protein EE612_000127, partial [Oryza sativa]	[more]
CAB3496390.1	2.6e-33	65.58	unnamed protein product [Digitaria exilis]	[more]

BLAST of Cmc10g0274821 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc10g0274821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSC0	4.5e-79	91.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1	[more]
A0A7C9D9Y3	3.2e-37	64.97	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A484M1B1	9.4e-37	65.61	Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ...	[more]
A0A103YMN4	9.4e-37	67.57	Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ...	[more]
A0A0P0UXN9	8.0e-36	67.53	Os01g0136050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01...	[more]

BLAST of Cmc10g0274821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0274821.1	Cmc10g0274821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane