Cmc10g0273271 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0273271
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr10: 6778025 .. 6778387 (-)
RNA-Seq Expression	Cmc10g0273271
Synteny	Cmc10g0273271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCAGTAAAGATCGAAGCGGTTACCAGTTGGCCTCGACCGTCTACAATTAGCGAGATTCGTAGTTTCTTGGGTTTAGCAGGTTACTACAGGACGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAGGCTTGTGTTTGCACCAGCCCTGACAATGCCAGATGGATCGGGGAGCTTTGTGATCTACAGTGATGCTTCTAAGAAAGGAATGGGCTGTGTGCTGATACAGCAAGGCAGGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCACGAGTAG

mRNA sequence

ATGGACCCAGTAAAGATCGAAGCGGTTACCAGTTGGCCTCGACCGTCTACAATTAGCGAGATTCGTAGTTTCTTGGGTTTAGCAGGTTACTACAGGACGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAGGCTTGTGTTTGCACCAGCCCTGACAATGCCAGATGGATCGGGGAGCTTTGTGATCTACAGTGATGCTTCTAAGAAAGGAATGGGCTGTGTGCTGATACAGCAAGGCAGGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCACGAGTAG

Coding sequence (CDS)

ATGGACCCAGTAAAGATCGAAGCGGTTACCAGTTGGCCTCGACCGTCTACAATTAGCGAGATTCGTAGTTTCTTGGGTTTAGCAGGTTACTACAGGACGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTTGCGAGAGTAGCTTCCAGGAGCTTAAGCAGAGGCTTGTGTTTGCACCAGCCCTGACAATGCCAGATGGATCGGGGAGCTTTGTGATCTACAGTGATGCTTCTAAGAAAGGAATGGGCTGTGTGCTGATACAGCAAGGCAGGGTAGTTGCTTATGCCTCCCGTCAGTTGAAGAGTCACGAGTAG

Protein sequence

MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE

Homology

[Close]

BLAST of Cmc10g0273271 vs. NCBI nr
Match: TYK03544.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1    MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
            MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA
Sbjct: 957  MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 1016

Query: 61   CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLK 118
            CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLK
Sbjct: 1017 CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLK 1073

[Close]

BLAST of Cmc10g0273271 vs. NCBI nr
Match: KAA0056047.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 2.5e-56
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           MDP KIEAVT+WPRPST+SEI+SFLGLAGYYR FVEDFSRIASPLTQLTRKGTPFVWSPA
Sbjct: 688 MDPAKIEAVTNWPRPSTVSEIQSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 747

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 120
           CESSFQELKQ+LV AP LT+PDGSGSFVIYSDASKKG+GCVL+QQG+VVAYASRQLKSHE
Sbjct: 748 CESSFQELKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHE 807

[Close]

BLAST of Cmc10g0273271 vs. NCBI nr
Match: TYK11717.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 4.3e-56
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           MDP KIEAVTSWPRPST+S+IRSFLGLAGYYR FVEDFS+IASPLTQLTRKGTPFVWSPA
Sbjct: 439 MDPAKIEAVTSWPRPSTVSKIRSFLGLAGYYRRFVEDFSQIASPLTQLTRKGTPFVWSPA 498

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 120
           CESSFQELKQ+LV AP LT+PDGSGSFVIYSDASKKG+GCVL+QQG+VVAYASRQLKSHE
Sbjct: 499 CESSFQELKQKLVSAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHE 558

[Close]

BLAST of Cmc10g0273271 vs. NCBI nr
Match: TYK05193.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 107/120 (89.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           +DP KIEAVT+WPRPST+SEIRSFLGLAGYYR FVEDFSRIASPLTQLTRKGTPFVWSPA
Sbjct: 844 VDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 903

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 120
           CESSFQELKQ+LV AP LT+PDGSG+FVIYSDASKKG+GCVL+QQG+VVAYASRQLKSHE
Sbjct: 904 CESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHE 963

[Close]

BLAST of Cmc10g0273271 vs. NCBI nr
Match: KAA0046133.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 9.5e-56
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           +DP KIE VT+WPRPST+SEIRSFLGLAGYYR FVEDFSRIASPLTQLTRKGTPFVWSPA
Sbjct: 540 VDPAKIEVVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 599

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 120
           CESSFQELKQ+LV AP LT+PDGSGSFVIYSDASKKG+GCVL+QQG+VVAYASRQLKSHE
Sbjct: 600 CESSFQELKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHE 659

[Close]

BLAST of Cmc10g0273271 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 2   DPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPF-VWSPA 61
           +P KIEA+  +P P+   EI++FLGL GYYR F+ +F+ IA P+T+  +K       +P 
Sbjct: 423 NPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPE 482

Query: 62  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 121
            +S+F++LK  +   P L +PD +  F + +DAS   +G VL Q G  ++Y SR L  HE
Sbjct: 483 YDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHE 542

[Close]

BLAST of Cmc10g0273271 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-19
Identity = 46/120 (38.33%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 2   DPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPF-VWSPA 61
           +P+K++A+ S+P P+   EIR+FLGL GYYR F+ +++ IA P+T   +K T        
Sbjct: 422 NPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLE 481

Query: 62  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 121
              +F++LK  ++  P L +PD    FV+ +DAS   +G VL Q G  +++ SR L  HE
Sbjct: 482 YIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHE 541

[Close]

BLAST of Cmc10g0273271 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-17
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 2   DPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTR----------- 61
           DP K++A+  +P P  + ++RSFLGLA YYR F++DF+ IA P+T + +           
Sbjct: 398 DPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMS 457

Query: 62  KGTPFVWSPACESSFQELKQRLVFAPA-LTMPDGSGSFVIYSDASKKGMGCVLIQQGRVV 121
           K  P  ++    ++FQ L+  L      L  PD    F + +DAS  G+G VL Q+GR +
Sbjct: 458 KKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPI 517

[Close]

BLAST of Cmc10g0273271 vs. ExPASy Swiss-Prot
Match: P31792 (Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-16
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           + P +IE V   P P    E+R FLG AG+ R ++  F+ +A+PL  LT++  PF W   
Sbjct: 255 LTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESAPFTWQEK 314

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQ----GRVVAYASRQL 117
            +S+F+ LK+ L+ APAL +PD S  F ++ D  +     VL Q+     R VAY S++L
Sbjct: 315 HQSAFEALKEALLSAPALGLPDTSKPFTLFIDEKQGIAKGVLTQKLGPWKRPVAYLSKKL 374

[Close]

BLAST of Cmc10g0273271 vs. ExPASy Swiss-Prot
Match: P10272 (Gag-Pol polyprotein OS=Baboon endogenous virus (strain M7) OX=11764 GN=pol PE=3 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-16
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 1    MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
            + P +IE V   P P    E+R FLG AG+ R ++  F+ +A+PL  LT++ TPF W   
Sbjct: 936  LTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTE 995

Query: 61   CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQ----GRVVAYASRQL 117
             + +F+ LK+ L+ APAL +PD S  F ++ D  +     VL Q+     R VAY S++L
Sbjct: 996  HQLAFEALKKALLSAPALGLPDTSKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKL 1055

[Close]

BLAST of Cmc10g0273271 vs. ExPASy TrEMBL
Match: A0A5D3BWP3 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00380 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 8.9e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1    MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
            MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA
Sbjct: 957  MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 1016

Query: 61   CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLK 118
            CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLK
Sbjct: 1017 CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLK 1073

[Close]

BLAST of Cmc10g0273271 vs. ExPASy TrEMBL
Match: A0A5A7UN68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002110 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           MDP KIEAVT+WPRPST+SEI+SFLGLAGYYR FVEDFSRIASPLTQLTRKGTPFVWSPA
Sbjct: 688 MDPAKIEAVTNWPRPSTVSEIQSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 747

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 120
           CESSFQELKQ+LV AP LT+PDGSGSFVIYSDASKKG+GCVL+QQG+VVAYASRQLKSHE
Sbjct: 748 CESSFQELKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHE 807

[Close]

BLAST of Cmc10g0273271 vs. ExPASy TrEMBL
Match: A0A5D3CIG2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00280 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           MDP KIEAVTSWPRPST+S+IRSFLGLAGYYR FVEDFS+IASPLTQLTRKGTPFVWSPA
Sbjct: 439 MDPAKIEAVTSWPRPSTVSKIRSFLGLAGYYRRFVEDFSQIASPLTQLTRKGTPFVWSPA 498

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 120
           CESSFQELKQ+LV AP LT+PDGSGSFVIYSDASKKG+GCVL+QQG+VVAYASRQLKSHE
Sbjct: 499 CESSFQELKQKLVSAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHE 558

[Close]

BLAST of Cmc10g0273271 vs. ExPASy TrEMBL
Match: A0A5D3BZN1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00670 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 107/120 (89.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           +DP KIEAVT+WPRPST+SEIRSFLGLAGYYR FVEDFSRIASPLTQLTRKGTPFVWSPA
Sbjct: 844 VDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 903

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 120
           CESSFQELKQ+LV AP LT+PDGSG+FVIYSDASKKG+GCVL+QQG+VVAYASRQLKSHE
Sbjct: 904 CESSFQELKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHE 963

[Close]

BLAST of Cmc10g0273271 vs. ExPASy TrEMBL
Match: A0A5D3D6J5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00940 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MDPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPA 60
           +DP KIEAVT+WPRPST+SEIRSFLGLAGYYR FVEDFSRIASPLTQLTRKGTPFVWSPA
Sbjct: 587 VDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPA 646

Query: 61  CESSFQELKQRLVFAPALTMPDGSGSFVIYSDASKKGMGCVLIQQGRVVAYASRQLKSHE 120
           CESSFQELKQ+LV AP LTMPDGSGSFVIYSDASKKG+GCVL+QQG+VVAYAS QLKSHE
Sbjct: 647 CESSFQELKQKLVTAPVLTMPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASCQLKSHE 706

[Close]

BLAST of Cmc10g0273271 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 7.8e-16
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 2   DPVKIEAVTSWPRPSTISEIRSFLGLAGYYRTFVEDFSRIASPLTQLTRKGTPFVWSPAC 61
           DP K+EA+  WP P   +E+R FLGL GYYR FV+++ +I  PLT+L +K +   W+   
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMA 106

Query: 62  ESSFQELKQRLVFAPALTMPDGSGSFV 89
             +F+ LK  +   P L +PD    FV
Sbjct: 107 ALAFKALKGAVTTLPVLALPDLKLPFV 132

The following BLAST results are available for this feature:

BLAST of Cmc10g0273271 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03544.1	1.8e-59	100.00	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
KAA0056047.1	2.5e-56	90.00	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK11717.1	4.3e-56	90.00	pol protein [Cucumis melo var. makuwa]	[more]
TYK05193.1	7.3e-56	89.17	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046133.1	9.5e-56	89.17	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc10g0273271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.1e-19	40.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.5e-19	38.33	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10401	2.4e-17	36.64	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P31792	1.2e-16	38.33	Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 ...	[more]
P10272	3.4e-16	38.33	Gag-Pol polyprotein OS=Baboon endogenous virus (strain M7) OX=11764 GN=pol PE=3 ...	[more]

BLAST of Cmc10g0273271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWP3	8.9e-60	100.00	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7UN68	1.2e-56	90.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31...	[more]
A0A5D3CIG2	2.1e-56	90.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00280 PE...	[more]
A0A5D3BZN1	3.5e-56	89.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]
A0A5D3D6J5	4.6e-56	90.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc10g0273271 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.8e-16	41.38	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 4..96 e-value: 1.5E-30 score: 107.0
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 57..120 e-value: 1.9E-16 score: 59.9
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 8..120
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 8..120
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0273271.1	Cmc10g0273271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding