Cmc10g0270631 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0270631
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTetratricopeptide repeat protein
LocationCMiso1.1chr10: 4693782 .. 4695158 (+)
RNA-Seq ExpressionCmc10g0270631
SyntenyCmc10g0270631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATTTAACATTTTTAAAATTACTCTAAATTTTCTTCTAAGTATTTAAATGTACAGAGTCGAGTAACGATTTAATTTTAAGTGATGAAAATGTGTTCCACGGTAATTTTAAAAATAACAAAAGTGATTTCAACAATTTCAAAATCACTTCCAAATATACACTAAAATACAGTTCACAACGGATACACAAACTCGATAGAGAAACATAAAAGTAGGAGAAGGTAGAAGGCAAATACAAAGGTTTCTAATTGAAGGAATTGAAAGATGAACGAAGATCACTCTCAGAAGACCCTTTTTTCCTTAATATTAACAACAAATCTCCCACCAGAGGAATAATTGGTTTTTTCTTTATCTTTTTCTTCTCCTTCTTCCCTCCAAAATACCCTATTTTGTCTCCAAAGCTCAATATCTGAGCCAATGTAGGTGACTCTGTCTCCTCCATTCTCCTCATCTTCAATTCCGACCTCTTCATTTCTTCTTCTATCCTTCCCCTCTCGCATCCCGTTGCAATTCTTCTCGTCGCTGCAGCTTTTGCCGCAGCAGCGGCCTCGGCCTCGGCTAACTTTGACATGTTCTTATGTAGCTCTGCATTCAGTGATGCCAATGCCACTTCTGTATCTTCTTCCCTTTCCTTTAGCAATCTCAACTCTTCCTTGGTCTCTTCCAGCTCTGCCTCGAGTTTCTTCAAGCTATCCAAAACATGTTCTTTCTCTTCTTTTATTGTTGTTGTAGAGCTTGGCATTGCCTCCCATGTGCCTATTTCAGGCAATGGGGCGTCGGTGGATGGTTTTGGAGATGATGAGTATGCGTCTCCAACTAGAAGGCGTTCGCCAAACACGGCAACAGCTTCTTTCACGGAGCGGAAGGGACGCGAGGTGTCGACCGTGGAGGCAGAACTTTGGCTAGGTATTTCAGGGTCTTCCATGGTTGGATGGTCAGTGAGTTTGGGATGTGTACGAGGATGTGGGAAGATATGGTATATTTGACGATTGGTTTGGTGGGAGAATTGAGCTCTTTGCTTTAGCTTTAAAAGTAAAGGGGAAGAGAGAGAGGGGTGGCTGTTGTTTCAAGGTTAAGACAAAAAAATCATCCTATCAATCCTGAGGGGAAGATCGTCGAAAATGACCACCTAACTAATGGAAAGGTGAAGCTTATATACGAAGATAAAATAGTTCTCGTTATCTAGATTTTGAGTTTAGTTTCTATTTGATTTGTAGATTTTAAAATTTTATATATTTAACATTTTAAGTCTTTTAATTTCAATTTAGTCTTTAGTATTCAAAATGTTACAATCATAAATGATATTTGAGTTTTGTTTCATTTTAGTCTATATGTTTCAAGATTTACATTTGTAGTTTCGACTTTTTATTAAATACT

mRNA sequence

TATATTTAACATTTTTAAAATTACTCTAAATTTTCTTCTAAGTATTTAAATGTACAGAGTCGAGTAACGATTTAATTTTAAGTGATGAAAATGTGTTCCACGGTAATTTTAAAAATAACAAAAGTGATTTCAACAATTTCAAAATCACTTCCAAATATACACTAAAATACAGTTCACAACGGATACACAAACTCGATAGAGAAACATAAAAGTAGGAGAAGGTAGAAGGCAAATACAAAGGTTTCTAATTGAAGGAATTGAAAGATGAACGAAGATCACTCTCAGAAGACCCTTTTTTCCTTAATATTAACAACAAATCTCCCACCAGAGGAATAATTGGTTTTTTCTTTATCTTTTTCTTCTCCTTCTTCCCTCCAAAATACCCTATTTTGTCTCCAAAGCTCAATATCTGAGCCAATGTAGGTGACTCTGTCTCCTCCATTCTCCTCATCTTCAATTCCGACCTCTTCATTTCTTCTTCTATCCTTCCCCTCTCGCATCCCGTTGCAATTCTTCTCGTCGCTGCAGCTTTTGCCGCAGCAGCGGCCTCGGCCTCGGCTAACTTTGACATGTTCTTATGTAGCTCTGCATTCAGTGATGCCAATGCCACTTCTGTATCTTCTTCCCTTTCCTTTAGCAATCTCAACTCTTCCTTGGTCTCTTCCAGCTCTGCCTCGAGTTTCTTCAAGCTATCCAAAACATGTTCTTTCTCTTCTTTTATTGTTGTTGTAGAGCTTGGCATTGCCTCCCATGTGCCTATTTCAGGCAATGGGGCGTCGGTGGATGGTTTTGGAGATGATGAGTATGCGTCTCCAACTAGAAGGCGTTCGCCAAACACGGCAACAGCTTCTTTCACGGAGCGGAAGGGACGCGAGGTGTCGACCGTGGAGGCAGAACTTTGGCTAGGTATTTCAGGGTCTTCCATGGTTGGATGGTCAGTGAGTTTGGGATGTGTACGAGGATGTGGGAAGATATGGTATATTTGACGATTGGTTTGGTGGGAGAATTGAGCTCTTTGCTTTAGCTTTAAAAGTAAAGGGGAAGAGAGAGAGGGGTGGCTGTTGTTTCAAGGTTAAGACAAAAAAATCATCCTATCAATCCTGAGGGGAAGATCGTCGAAAATGACCACCTAACTAATGGAAAGGTGAAGCTTATATACGAAGATAAAATAGTTCTCGTTATCTAGATTTTGAGTTTAGTTTCTATTTGATTTGTAGATTTTAAAATTTTATATATTTAACATTTTAAGTCTTTTAATTTCAATTTAGTCTTTAGTATTCAAAATGTTACAATCATAAATGATATTTGAGTTTTGTTTCATTTTAGTCTATATGTTTCAAGATTTACATTTGTAGTTTCGACTTTTTATTAAATACT

Coding sequence (CDS)

ATGTTCTTATGTAGCTCTGCATTCAGTGATGCCAATGCCACTTCTGTATCTTCTTCCCTTTCCTTTAGCAATCTCAACTCTTCCTTGGTCTCTTCCAGCTCTGCCTCGAGTTTCTTCAAGCTATCCAAAACATGTTCTTTCTCTTCTTTTATTGTTGTTGTAGAGCTTGGCATTGCCTCCCATGTGCCTATTTCAGGCAATGGGGCGTCGGTGGATGGTTTTGGAGATGATGAGTATGCGTCTCCAACTAGAAGGCGTTCGCCAAACACGGCAACAGCTTCTTTCACGGAGCGGAAGGGACGCGAGGTGTCGACCGTGGAGGCAGAACTTTGGCTAGGTATTTCAGGGTCTTCCATGGTTGGATGGTCAGTGAGTTTGGGATGTGTACGAGGATGTGGGAAGATATGGTATATTTGA

Protein sequence

MFLCSSAFSDANATSVSSSLSFSNLNSSLVSSSSASSFFKLSKTCSFSSFIVVVELGIASHVPISGNGASVDGFGDDEYASPTRRRSPNTATASFTERKGREVSTVEAELWLGISGSSMVGWSVSLGCVRGCGKIWYI
Homology
[Close]
BLAST of Cmc10g0270631 vs. NCBI nr
Match: GER39854.1 (tetratricopeptide repeat protein [Striga asiatica])

HSP 1 Score: 54.3 bits (129), Expect = 9.7e-04
Identity = 52/119 (43.70%), Postives = 65/119 (54.62%), Query Frame = 0 

Query: 9   SDANATSVSSSLSFSNLNSSLVSSSSASSFFKLSKT------CSFSSFIVVVELGIASHV 68
           + ANATS S SLS S  +S   SSSS SSF   S +        ++   +++ +G+   +
Sbjct: 122 TSANATSFSDSLSLSTFSSFFASSSSTSSFLTASSSNIGLGEAVWAHIGLLLVIGLGEKI 181

Query: 69  PISGNGASVDGFGDDEYASPTRRRSPNTATASFTERKGREVSTVEAELWLGISGSSMVG 122
             S  G SV G G     SP ++RSP  ATASFTERKGREVS VE  L    SGS   G
Sbjct: 182 GASFCG-SVKGLG-LIIISPAKKRSPKMATASFTERKGREVSMVERRL----SGSGAWG 234

[Close]
BLAST of Cmc10g0270631 vs. ExPASy TrEMBL
Match: A0A5A7Q468 (Tetratricopeptide repeat protein OS=Striga asiatica OX=4170 GN=STAS_16503 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-04
Identity = 52/119 (43.70%), Postives = 65/119 (54.62%), Query Frame = 0 

Query: 9   SDANATSVSSSLSFSNLNSSLVSSSSASSFFKLSKT------CSFSSFIVVVELGIASHV 68
           + ANATS S SLS S  +S   SSSS SSF   S +        ++   +++ +G+   +
Sbjct: 122 TSANATSFSDSLSLSTFSSFFASSSSTSSFLTASSSNIGLGEAVWAHIGLLLVIGLGEKI 181

Query: 69  PISGNGASVDGFGDDEYASPTRRRSPNTATASFTERKGREVSTVEAELWLGISGSSMVG 122
             S  G SV G G     SP ++RSP  ATASFTERKGREVS VE  L    SGS   G
Sbjct: 182 GASFCG-SVKGLG-LIIISPAKKRSPKMATASFTERKGREVSMVERRL----SGSGAWG 234

The following BLAST results are available for this feature:
BLAST of Cmc10g0270631 vs. NCBI nr
Match NameE-valueIdentityDescription
GER39854.19.7e-0443.70tetratricopeptide repeat protein [Striga asiatica][more]
BLAST of Cmc10g0270631 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc10g0270631 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7Q4684.7e-0443.70Tetratricopeptide repeat protein OS=Striga asiatica OX=4170 GN=STAS_16503 PE=4 S... [more]
BLAST of Cmc10g0270631 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0270631.1Cmc10g0270631.1mRNA