Cmc10g0270111 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0270111
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description50S ribosomal protein L7/L12
LocationCMiso1.1chr10: 4395286 .. 4398671 (-)
RNA-Seq ExpressionCmc10g0270111
SyntenyCmc10g0270111
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACACCTTCCTTTCTCCACATCATACACCCGCCAACCCACGTTTCTCAGCCTTCCTCTCCGGCGACCCGCCAGTAACCACAGGCGTAAAGCAGCGAAGATTGGACGAACGCGCAGTTCTGTACTCGAAGACATTCTATGTTCACTAGCGAATCTGCCTTGCATTGTGAGCACGACTCCGAGAATGGATTTTAGTGTTCACATGTTGTTCTGGACTCTTGGAGCTCTATAATTGTTATTGTGTTTGGGTAAATTTCTAAGTATTTTATTAAGGGAAGGTCGAACACATCTTCGGACTAATTTAGACTCGAATTAAGTGTATTAGATCAGTTTTTGACTTGTGAAAGTTTGTTAGCTGTAGCTTCGTGTTAATTTAGGGGGATTTGTTAAGGTTTATGGTTGATTTTGGATAAATCTCTCGATGCCAAATATGGTTTTTGAACCAAGTTATAACACTTGATCAATATGTTTAACGTGTTGGCTTTCTGAGAGTTGGATCGACATCATAGAAATGTCGATGAGGTAGTTAGTTTCAGAATCCCTTCCAAAATATAAATTTCACGGGTTCATGAACGTTTGAAAATATGTTCGAAAGCTTGTTTTGTAACTTATAAAACGTTGAAATTGTTTTGGATGGTTTTAATGTTTTCCTATTAGAAATCATGTTTGACTGAAAGTGTGTTGTATATTTTAGTTGGTTTTGCCAAATGAAAGTATGTCATTGTTTGAAACTATAGTTGAAGTGTTTCAGCTGAATTTGAAGAAAATGTTTGTGTTTTTGGGTTACTTCTGAAGGTTTTTAAAAAATTTAAATGTTTTGATTTGATCAGTTTTACCGTTGAAAATGTTATTTGAATGTTTTTTTTCTTTCAAATTTTTATGAACTTTGTTAGGGGCTATCTGGAAATGTCAGTTTTTGCTTGTATGGAAATGTATAATTAACAGTATTTGATCTGATAAGCTTATTTATGAGAAAACACTTTTTTTTTTGTTTGGCGTTATTTGGAACGAAGACTCATGTGTGTTGCACTCACATGGCCTCATACTTAAGTAGTTCGAGTGTTGTTCTGGTCGATTGTTGATCAACATCTCTGATTGAATGAATGGCCGATGTTGCCAACGAGTAACCATATATGCCGGGCTGCTTTATGTAACATTTCTTACTTTGTGGTTTGAAAGTTATATTGTACAAATTGTTGATTGAAGTTCTGTCTTGATTGAAAGTATTGAAAGATTAGTGTTTTAAAAAGTATGAAAGTTCTATTTATAAGGGTGTTGAAAGTTTATTCGAACGTTTTGGTTTTGTTGAAAGACTATTTTAAAGTTTCACCTTCTTCTACCCTCAGTCTTTGGTTTGTGATAGCCCTCCACCCTCATGTCTGTGAGATTCACCTTCTTCTATTGTTGTAGTCCAAGAGTCAGGTCTACTGACAACAGTAACTAACTCAAATTAAGACGTAGAACTTATATTTTAATAATGATGGAGAAGACACATTAAAAGCTTCCATCACTTTCACTGAGACCTTGGTCTACAGAATAAGAATGTGCCAGAGGGTTCATTTCTTCTCATCAAAAGAAGAGTGAAGAGTGAAGACCACCCTGAGGTTTTGGAATGCCTCGAACAATTTGATCAGAAAAGGAAGATCAACAGGAGCTAACTTGGTTTCTTGGAGAATAGTAGTATAGAATTTAAAGCTTTAACTGGTAACATTCTAAAATCTCTTCTTAGGTTTTTATGAATGTGAGTTAACTTCTAACAATTCTATGCCGTGAGTAAATCTGGGGGAGTCAAGGAGAAAACTGACATTTTTTCATCTATGTTAATAGGAGTGTTTGGCCACCAACTTATGAAGTTACATATTTATGAAGAAACTCTATCTTCCCCTCTTTCTCTTTACCTCTATCCAATTTTTCGTAACTCTAGACTAAACAATATGCACTCCAAAAACAAATTTCTTAACTCCAAACTTTAGAACTCAACTTAATGCTCCAAGTACCACTTAATATTTTTATTCAATTTGTTAGAATTAGTGGACAATTTTATATTAGAATTGTTCATTTTTTCCTTCACGATCTGGAGAGGAAGTGAGAGGGAGGGATGGTTATGACTTGATGTATTCTTCAGGGATTTTAATAGGGATGATATTAGAGGAACATTAAGAGTATTAGTAAACAGTTAAGTAGTTTGTTAGTGAAGTTTGGTTGTACATATAGTGGGTAGAGAAGAAGGGGGATGTTCGATATTTGGTGAGTGAATTAGGGTTTGTGAGTGATCGCTAGATCAAGAGCGTTCAGGTATTTTGAACACTTGATTCATCTTATATTTCCATTATCTTTTATATTTTAACATATCCGAGTTCTATCATATTTTAAAAACAACTGTTTTCACGTTCCTCAGGTTTTTTGATCCATGCTGCAATAATTCTCACCGACATTAAATTGAACAAATAATGAAGCTGACTATGGTTGCAAGATCCCTTCGAGTCCATTCCACACTCACCAAAATAATTGGATTGTCGCAGGTTCGCTTCTTTCAGCCAGATTTTACTACCAGAGACCCGAATTCCAAGCCAAAAATACACAAATATCCACCATTTTATGATCCATATGGCCCTAAGCCTTCACCCTCAGATAAAATCATTGAACTTGCTGAAAGAATTGTAACACTGCCTCCCAATGAGCGTTGCCAGATCGGTCCGACACTCTCTGAAAGACTTAGACATCCTAAGTAGCAGCCAATTTCAGTGGATGGCTTGGACGTTGGTACCGAAGGTCGAAGGAGGAGGGGCGGCAGCAGGATCGTCTAAGGCAGAGGAGAAGGAAGAAAAAACCGCATTTGATGTGAAGTTAGAGAAGTTCGACAGTGCTTCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATCTGGGTCTCAAGGAGGCAAAAGATTTGGTTGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAGGAAGAAGCAAATGATATCATTGAAAAAATCAAAGCTGCTGGGGGAGTTGCTGTGATGGAAGTAGTAAAATGTTCTAAAGTTAGTATTGACTTTTTGTTTATATATATCTTTTCCAACTGGGCAATTCCTAGCTTCAATCAATCACTGGATGGTGAATATTCTTCTCTAAGTTGATGTTGTTAACAGCCAGTTGAGTTGGGAAAAGGTTGAAGAATAATAACAAATCACTTTTTCTAGACTTAAGATTCCTCTATGCAGTGATTTAGGCCCTTTATCCTTTCACTAGAATATGATACTACATATTACAAAACAAATCAAATGTAAGTATATACCCTTCATTTGGAGAGAGGTTAGGTACTGCTGCTGTGTAGCTTTCGCTGTTTGAACTTCGAATTATTAGTCATTCAG

mRNA sequence

ACACACCTTCCTTTCTCCACATCATACACCCGCCAACCCACGTTTCTCAGCCTTCCTCTCCGGCGACCCGCCAGTAACCACAGGCGTAAAGCAGCGAAGATTGGACGAACGCGCAGTTCTGTACTCGAAGACATTCTATGTTCACTAGCGAATCTGCCTTGCATTGTTTTTTGATCCATGCTGCAATAATTCTCACCGACATTAAATTGAACAAATAATGAAGCTGACTATGGTTGCAAGATCCCTTCGAGTCCATTCCACACTCACCAAAATAATTGGATTGTCGCAGGTTCGCTTCTTTCAGCCAGATTTTACTACCAGAGACCCGAATTCCAAGCCAAAAATACACAAATATCCACCATTTTATGATCCATATGGCCCTAAGCCTTCACCCTCAGATAAAATCATTGAACTTGCTGAAAGAATTGTAACACTGCCTCCCAATGAGCGTTGCCAGATCGGTCCGACACTCTCTGAAAGACTTAGACATCCTAAGTAGCAGCCAATTTCAGTGGATGGCTTGGACGTTGGTACCGAAGGTCGAAGGAGGAGGGGCGGCAGCAGGATCGTCTAAGGCAGAGGAGAAGGAAGAAAAAACCGCATTTGATGTGAAGTTAGAGAAGTTCGACAGTGCTTCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATCTGGGTCTCAAGGAGGCAAAAGATTTGGTTGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAGGAAGAAGCAAATGATATCATTGAAAAAATCAAAGCTGCTGGGGGAGTTGCTGTGATGGAAGTAGTAAAATGTTCTAAAGTTAGTATTGACTTTTTGTTTATATATATCTTTTCCAACTGGGCAATTCCTAGCTTCAATCAATCACTGGATGGTGAATATTCTTCTCTAAGTTGATGTTGTTAACAGCCAGTTGAGTTGGGAAAAGGTTGAAGAATAATAACAAATCACTTTTTCTAGACTTAAGATTCCTCTATGCAGTGATTTAGGCCCTTTATCCTTTCACTAGAATATGATACTACATATTACAAAACAAATCAAATGTAAGTATATACCCTTCATTTGGAGAGAGGTTAGGTACTGCTGCTGTGTAGCTTTCGCTGTTTGAACTTCGAATTATTAGTCATTCAG

Coding sequence (CDS)

ATGAGCGTTGCCAGATCGGTCCGACACTCTCTGAAAGACTTAGACATCCTAAGTAGCAGCCAATTTCAGTGGATGGCTTGGACGTTGGTACCGAAGGTCGAAGGAGGAGGGGCGGCAGCAGGATCGTCTAAGGCAGAGGAGAAGGAAGAAAAAACCGCATTTGATGTGAAGTTAGAGAAGTTCGACAGTGCTTCAAAAATTAAGGTGATTAAAGAAGTAAGGTCTTTCACTAATCTGGGTCTCAAGGAGGCAAAAGATTTGGTTGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAGGAAGAAGCAAATGATATCATTGAAAAAATCAAAGCTGCTGGGGGAGTTGCTGTGATGGAAGTAGTAAAATGTTCTAAAGTTAGTATTGACTTTTTGTTTATATATATCTTTTCCAACTGGGCAATTCCTAGCTTCAATCAATCACTGGATGGTGAATATTCTTCTCTAAGTTGA

Protein sequence

MSVARSVRHSLKDLDILSSSQFQWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVMEVVKCSKVSIDFLFIYIFSNWAIPSFNQSLDGEYSSLS
Homology
[Close]
BLAST of Cmc10g0270111 vs. NCBI nr
Match: KAA0034198.1 (50S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK15722.1 50S ribosomal protein L7/L12 [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 5.4e-59
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MSVARSVRHSLKDLDILSSSQFQWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAFDVKLEK 60
           MSVARSVRHSLKDLDILSSSQFQWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAFDVKLEK
Sbjct: 1   MSVARSVRHSLKDLDILSSSQFQWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAFDVKLEK 60

Query: 61  FDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVM 120
           FDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVM
Sbjct: 61  FDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVM 120

Query: 121 EVVKCSK 128
           EVVKCSK
Sbjct: 121 EVVKCSK 127

[Close]
BLAST of Cmc10g0270111 vs. NCBI nr
Match: XP_038905834.1 (50S ribosomal protein L7/L12 [Benincasa hispida] >XP_038905841.1 50S ribosomal protein L7/L12 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 8.7e-33
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 36  GGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 95
           GGA AGSSK EEK+EKTAFDVKLEKFD+ASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL
Sbjct: 108 GGAGAGSSKVEEKKEKTAFDVKLEKFDAASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 167

Query: 96  KQGVTKEEANDIIEKIKAAGGVAVME 122
           KQGVTKEEANDIIEKIKAAGGVAVME
Sbjct: 168 KQGVTKEEANDIIEKIKAAGGVAVME 193

[Close]
BLAST of Cmc10g0270111 vs. NCBI nr
Match: XP_022155073.1 (uncharacterized protein LOC111022207 [Momordica charantia] >XP_022155074.1 uncharacterized protein LOC111022207 [Momordica charantia])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-32
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 36  GGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 95
           GGA AGSSK EEK+EKTAFDVKLEKFD+A+KIKVIKEVRSFTNLGLKEAKDLVEKVPAIL
Sbjct: 108 GGAGAGSSKVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 167

Query: 96  KQGVTKEEANDIIEKIKAAGGVAVME 122
           KQGVTKEEANDIIEKIKAAGGVAVME
Sbjct: 168 KQGVTKEEANDIIEKIKAAGGVAVME 193

[Close]
BLAST of Cmc10g0270111 vs. NCBI nr
Match: XP_023525921.1 (uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-31
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 35  GGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAI 94
           GGGAA GSSK EEK+EKTAFDVKLEKF++A+KIKVIKEVR+FTNLGLKEAKDLVEKVPAI
Sbjct: 107 GGGAATGSSKVEEKKEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAI 166

Query: 95  LKQGVTKEEANDIIEKIKAAGGVAVME 122
           LKQGVTKEEAN IIEKIKAAGGVAVME
Sbjct: 167 LKQGVTKEEANSIIEKIKAAGGVAVME 193

[Close]
BLAST of Cmc10g0270111 vs. NCBI nr
Match: XP_022949504.1 (uncharacterized protein LOC111452831 [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-31
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 35  GGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAI 94
           GGGAA GSSK EEK+EKTAFDVKLEKF++A+KIKVIKEVR+FTNLGLKEAKDLVEKVPAI
Sbjct: 107 GGGAATGSSKVEEKKEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAI 166

Query: 95  LKQGVTKEEANDIIEKIKAAGGVAVME 122
           LKQGVTKEEAN IIEKIKAAGGVAVME
Sbjct: 167 LKQGVTKEEANSIIEKIKAAGGVAVME 193

[Close]
BLAST of Cmc10g0270111 vs. ExPASy Swiss-Prot
Match: A2C031 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=167555 GN=rplL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-15
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 0 

Query: 37  GAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILK 96
           GAAAG   A+  EEKT F+V LE FD++SKIKV+KEVR+ T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 97  QGVTKEEANDIIEKIKAAGGVAVME 122
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]
BLAST of Cmc10g0270111 vs. ExPASy Swiss-Prot
Match: Q46HH2 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=rplL PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.5e-15
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 0 

Query: 37  GAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILK 96
           GAAAG   A+  EEKT F+V LE F+++SKIKV+KEVR+ T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 97  QGVTKEEANDIIEKIKAAGGVAVME 122
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]
BLAST of Cmc10g0270111 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-14
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 0 

Query: 1   MSVARSVRHSLKDLDILSSSQF------QWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAF 60
           MS   S+   L  L +L +++       +W      P V    +AAG S A    EKT F
Sbjct: 1   MSNIESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAP-VAVVASAAGES-AAAVAEKTEF 60

Query: 61  DVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAA 120
           +V LE FD+  KI VIKEVR+ T LGLKEAKD VE  P  LK GV+K+EA ++ +K++AA
Sbjct: 61  EVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLEAA 120

[Close]
BLAST of Cmc10g0270111 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-14
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 0 

Query: 31  PKVEGGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEK 90
           P   GG +AAG    E  EEKT FDV LE FD+A+KIKV+KEVR+ T LGL EAK +VE 
Sbjct: 46  PGAGGGASAAG----EAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEA 105

Query: 91  VPAILKQGVTKEEANDIIEKIKAAGGVAVME 122
            P  +K+G +KE+A  + + I+A GG   ++
Sbjct: 106 APKTIKEGASKEDAEALKKAIEAVGGKVTLK 132

[Close]
BLAST of Cmc10g0270111 vs. ExPASy Swiss-Prot
Match: Q7U3T9 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rplL PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-14
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 0 

Query: 7   VRHSLKDLDILSSSQFQWM---AWTLVPKVEGG------GAAAGSSKAEEKEEKTAFDVK 66
           +  SLK L +L +S+       A+ +      G      GAAAG    E  EEKT FDV 
Sbjct: 8   ILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGGGGEVAEEKTEFDVI 67

Query: 67  LEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGV 122
           LE FD+A+KIKV+K VR+ T LGL +AK LVE  P  +K+G++K+EA  + ++I+  GG 
Sbjct: 68  LESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEIEEVGGK 127

[Close]
BLAST of Cmc10g0270111 vs. ExPASy TrEMBL
Match: A0A5A7SU77 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002210 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.6e-59
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 1   MSVARSVRHSLKDLDILSSSQFQWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAFDVKLEK 60
           MSVARSVRHSLKDLDILSSSQFQWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAFDVKLEK
Sbjct: 1   MSVARSVRHSLKDLDILSSSQFQWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAFDVKLEK 60

Query: 61  FDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVM 120
           FDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVM
Sbjct: 61  FDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVM 120

Query: 121 EVVKCSK 128
           EVVKCSK
Sbjct: 121 EVVKCSK 127

[Close]
BLAST of Cmc10g0270111 vs. ExPASy TrEMBL
Match: A0A6J1DM08 (uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022207 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-33
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0 

Query: 36  GGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 95
           GGA AGSSK EEK+EKTAFDVKLEKFD+A+KIKVIKEVRSFTNLGLKEAKDLVEKVPAIL
Sbjct: 108 GGAGAGSSKVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 167

Query: 96  KQGVTKEEANDIIEKIKAAGGVAVME 122
           KQGVTKEEANDIIEKIKAAGGVAVME
Sbjct: 168 KQGVTKEEANDIIEKIKAAGGVAVME 193

[Close]
BLAST of Cmc10g0270111 vs. ExPASy TrEMBL
Match: A0A1S3BPI3 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.9e-32
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 36  GGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 95
           GGAAAGSS  EEK+EKTAFDVKLEKFD+ASKIKVIKEVR+FTNLGLKEAKDLVEKVPAIL
Sbjct: 108 GGAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAIL 167

Query: 96  KQGVTKEEANDIIEKIKAAGGVAVME 122
           KQGVTKEEAN IIEKIKAAGGVAVME
Sbjct: 168 KQGVTKEEANGIIEKIKAAGGVAVME 193

[Close]
BLAST of Cmc10g0270111 vs. ExPASy TrEMBL
Match: A0A5A7U2A3 (50S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00400 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.9e-32
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 36  GGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 95
           GGAAAGSS  EEK+EKTAFDVKLEKFD+ASKIKVIKEVR+FTNLGLKEAKDLVEKVPAIL
Sbjct: 108 GGAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAIL 167

Query: 96  KQGVTKEEANDIIEKIKAAGGVAVME 122
           KQGVTKEEAN IIEKIKAAGGVAVME
Sbjct: 168 KQGVTKEEANGIIEKIKAAGGVAVME 193

[Close]
BLAST of Cmc10g0270111 vs. ExPASy TrEMBL
Match: A0A0A0L907 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G623960 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.9e-32
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 36  GGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAIL 95
           GGAAAGSS  EEK+EKTAFDVKLEKFD+ASKIKVIKEVR+FTNLGLKEAKDLVEKVPAIL
Sbjct: 108 GGAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAIL 167

Query: 96  KQGVTKEEANDIIEKIKAAGGVAVME 122
           KQGVTKEEAN IIEKIKAAGGVAVME
Sbjct: 168 KQGVTKEEANGIIEKIKAAGGVAVME 193

[Close]
BLAST of Cmc10g0270111 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 0 

Query: 35  GGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAI 94
           G     G+   EEK+EKTAFDVKLEKF+++ KIKVIKEVR+FT+LGLKEAK+LVEKVPAI
Sbjct: 100 GAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAI 159

Query: 95  LKQGVTKEEANDIIEKIKAAGGVAVME 122
           LKQGVTKEEAN+II KIKA GG+AVME
Sbjct: 160 LKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of Cmc10g0270111 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 0 

Query: 35  GGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAI 94
           G     G+   EEK+EKTAFDVKLEKF+++ KIKVIKEVR+FT+LGLKEAK+LVEKVPAI
Sbjct: 100 GAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAI 159

Query: 95  LKQGVTKEEANDIIEKIKAAGGVAVME 122
           LKQGVTKEEAN+II KIKA GG+AVME
Sbjct: 160 LKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of Cmc10g0270111 vs. TAIR 10
Match: AT3G06040.3 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 0 

Query: 35  GGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKVPAI 94
           G     G+   EEK+EKTAFDVKLEKF+++ KIKVIKEVR+FT+LGLKEAK+LVEKVPAI
Sbjct: 100 GAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAI 159

Query: 95  LKQGVTKEEANDIIEKIKAAGGVAVME 122
           LKQGVTKEEAN+II KIKA GG+AVME
Sbjct: 160 LKQGVTKEEANEIIAKIKAVGGIAVME 186

[Close]
BLAST of Cmc10g0270111 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-22
Identity = 59/114 (51.75%), Postives = 75/114 (65.79%), Query Frame = 0 

Query: 8   RHSLKDLDILSSSQFQWMAWTLVPKVEGGGAAAGSSKAEEKEEKTAFDVKLEKFDSASKI 67
           R  L D  +L S +     +     V G    A +S   +  EKT FDVKLEKF++ASKI
Sbjct: 54  RIELYDYSLLFSHKIGLNRYGSAVAVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKI 113

Query: 68  KVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVME 122
           KVIKE+R+FT+LGLKEAK LVEK P I+K G+TKEEA  I+EK+KA G +  +E
Sbjct: 114 KVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]
BLAST of Cmc10g0270111 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 100.9 bits (250), Expect = 9.6e-22
Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 0 

Query: 35  GGGA---AAGSSKAEEKEEKTAFDVKLEKFDSASKIKVIKEVRSFTNLGLKEAKDLVEKV 94
           G GA   A G  K ++KE KTAFDV L+ +D+ SKIKVIKEVR+ T LGLKEAKDLVEK 
Sbjct: 90  GSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKA 149

Query: 95  PAILKQGVTKEEANDIIEKIKAAGGVAVME 122
           P +LK+GV+KEEA  IIEK+KA G    ME
Sbjct: 150 PTLLKKGVSKEEAEKIIEKLKAVGAKVAME 179

The following BLAST results are available for this feature:
BLAST of Cmc10g0270111 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034198.15.4e-59100.0050S ribosomal protein L7/L12 [Cucumis melo var. makuwa] >TYK15722.1 50S ribosoma... [more]
XP_038905834.18.7e-3395.3550S ribosomal protein L7/L12 [Benincasa hispida] >XP_038905841.1 50S ribosomal p... [more]
XP_022155073.11.9e-3294.19uncharacterized protein LOC111022207 [Momordica charantia] >XP_022155074.1 uncha... [more]
XP_023525921.11.6e-3190.80uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo][more]
XP_022949504.11.6e-3190.80uncharacterized protein LOC111452831 [Cucurbita moschata][more]
BLAST of Cmc10g0270111 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2C0312.9e-1554.1250S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) OX=16755... [more]
Q46HH28.5e-1552.9450S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) OX=59920... [more]
P411892.5e-1442.8650S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=... [more]
A9BDG45.5e-1450.5550S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930... [more]
Q7U3T97.2e-1441.1350S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rp... [more]
BLAST of Cmc10g0270111 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SU772.6e-59100.0050S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6J1DM089.4e-3394.19uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A1S3BPI37.9e-3293.0250S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1[more]
A0A5A7U2A37.9e-3293.0250S ribosomal protein L7/L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A0A0L9077.9e-3293.02Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G6239... [more]
BLAST of Cmc10g0270111 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G06040.11.4e-2875.86Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.21.4e-2875.86Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT3G06040.31.4e-2875.86Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT4G37660.11.9e-2251.75Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
AT4G36420.19.6e-2263.33Ribosomal protein L12 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 54..117
e-value: 1.2E-22
score: 80.1
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 47..120
e-value: 8.5E-24
score: 85.4
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeSUPERFAMILY54736ClpS-likecoord: 49..120
IPR000206Ribosomal protein L7/L12PANTHERPTHR4598739S RIBOSOMAL PROTEIN L12coord: 36..121
IPR000206Ribosomal protein L7/L12CDDcd00387Ribosomal_L7_L12coord: 26..120
e-value: 4.18708E-37
score: 121.879
NoneNo IPR availablePANTHERPTHR45987:SF6RIBOSOMAL PROTEIN L12/ ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS FAMILY PROTEINcoord: 36..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0270111.1Cmc10g0270111.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
biological_process GO:0006412 translation
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003735 structural constituent of ribosome