Cmc10g0262161 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0262161
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionORF71b
LocationCMiso1.1chr10: 128337 .. 129347 (+)
RNA-Seq ExpressionCmc10g0262161
SyntenyCmc10g0262161
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTCGGCGAATCAATTTGTTTCTTTATTTTATTGGTTTTGCCCGGCTCAGTATCATAAAAGGGAATGGCTCGGCTAGGTGTGATAGCCGAGCCAAAACAGAAAAAAAGATTAGATAGAAATGAAGAAAGGAAAAAGGAGGACTTTTAAAATATAACCCGATCTGTCCAACCTGATATGTATGGTGGAATCCAATTGATTTTGACTTCAAGCATTAGATCGCCTGTCTCAGTTAAGAGGAGTCATGAACAGAACAGGTTCAAAATCACGATCAATTCCTTTTTCAAATCCTGCGGCAGCTGCACGAGCCCTTCCTGCATGCCATAAATGACCTACGAATAGGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTAATTTCGGTAGCTACGCCCCCCACGGAATTTAAAGAACCTAAAGGAGCATGGGTCATATATTCCGCGGAACGTCGTTCTTGCCAAGGTTGGATGTCTTTTTTCAGTCTACTCAAGTCCAAACCATTAGGACCCCTTAGTGGTTCTAACCAAGGAGCACGCAGATCCCAAAAACGCATAGTCTCTCCCCCAAAAATGACTTCTCCAGTCGGAGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCAACGTTAGCTCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGTCGGCCCGTAAAACTCACTCGGATAAGCAGTATTATTGAACCAGACAAAACAACAAGCAATAAAACCAAAAACAGATAAAGCACCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAGTGCGCGGCGAGCCCATGCAAAGGGTTTAGTTAAGATATGCCAAATTCCACCAAGTATACAAATGGAACCTAACCATACATGTCCCCCAACTATATCTTCCAAATCGTCCACACTAACAATCCATCCTTCTCCGCCAAAAGGAGATTTTAGT

mRNA sequence

TGTTCGGCGAATCAATTTGTTTCTTTATTTTATTGGTTTTGCCCGGCTCAGTATCATAAAAGGGAATGGCTCGGCTAGGTGTGATAGCCGAGCCAAAACAGAAAAAAAGATTAGATAGAAATGAAGAAAGGAAAAAGGAGGACTTTTAAAATATAACCCGATCTGTCCAACCTGATATGTATGGTGGAATCCAATTGATTTTGACTTCAAGCATTAGATCGCCTGTCTCAGTTAAGAGGAGTCATGAACAGAACAGGTTCAAAATCACGATCAATTCCTTTTTCAAATCCTGCGGCAGCTGCACGAGCCCTTCCTGCATGCCATAAATGACCTACGAATAGGAAGAATCCTAGAACAAAATGAGAGGTAGCTAACCAACTTCTAGGAGAGACATAATTGACTGCATTAATTTCGGTAGCTACGCCCCCCACGGAATTTAAAGAACCTAAAGGAGCATGGGTCATATATTCCGCGGAACGTCGTTCTTGCCAAGGTTGGATGTCTTTTTTCAGTCTACTCAAGTCCAAACCATTAGGACCCCTTAGTGGTTCTAACCAAGGAGCACGCAGATCCCAAAAACGCATAGTCTCTCCCCCAAAAATGACTTCTCCAGTCGGAGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGAGCGGATCCAACGTTAGCTCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGTCCAGTCGGCCCGTAAAACTCACTCGGATAAGCAGTATTATTGAACCAGACAAAACAACAAGCAATAAAACCAAAAACAGATAAAGCACCTAAACTATAAGACAAGTAAGCTTCTCCAGACCATACAAGTGCGCGGCGAGCCCATGCAAAGGGTTTAGTTAAGATATGCCAAATTCCACCAAGTATACAAATGGAACCTAACCATACATGTCCCCCAACTATATCTTCCAAATCGTCCACACTAACAATCCATCCTTCTCCGCCAAAAGGAGATTTTAGT

Coding sequence (CDS)

ATGTCTTTTTTCAGTCTACTCAAGTCCAAACCATTAGGACCCCTTAGTGGTTCTAACCAAGGAGCACGCAGATCCCAAAAACGCATAGTCTCTCCCCCAAAAATGACTTCTCCAGTCGGAGAACGCATTAGATATTTACCTAAACCAGTAGGTCCTTGA

Protein sequence

MSFFSLLKSKPLGPLSGSNQGARRSQKRIVSPPKMTSPVGERIRYLPKPVGP
Homology
[Close]
BLAST of Cmc10g0262161 vs. NCBI nr
Match: YP_001152193.1 (ORF71b [Pinus koraiensis] >ABP35436.1 ORF71b [Pinus koraiensis])

HSP 1 Score: 96.3 bits (238), Expect = 8.4e-17
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MSFFSLLKSKPLGPLSGSNQGARRSQKRIVSPPKMTSPVGERIRYLPKPVGP 53
          MSFF+LL+SKPLGPL GSNQGARRSQKRIVSPPK+ SPVGERIRYLPKPVGP
Sbjct: 1  MSFFNLLRSKPLGPLRGSNQGARRSQKRIVSPPKIISPVGERIRYLPKPVGP 52

[Close]
BLAST of Cmc10g0262161 vs. NCBI nr
Match: TKW00582.1 (hypothetical protein SEVIR_8G119460v2 [Setaria viridis])

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MSFFSLLKSKPLGPLSGSNQGARRSQKRIVSPPKMTSPVGERIRYLPKPVGP 53
          MSF +LLKSKPLGPL GSN GARRSQK IVSPPK+TSP+GERIRYLPKPVGP
Sbjct: 1  MSFLNLLKSKPLGPLRGSNHGARRSQKCIVSPPKITSPIGERIRYLPKPVGP 52

[Close]
BLAST of Cmc10g0262161 vs. NCBI nr
Match: KAG2570069.1 (hypothetical protein PVAP13_7KG182617 [Panicum virgatum])

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1  MSFFSLLKSKPLGPLSGSNQGARRSQKRIVSPPKMTSPVGERIRYLPKPVGP 53
          MSFF+LLKSKPLGPL  SN  ARRSQK IVSPPKMTSPVGERIRYLPKPVGP
Sbjct: 1  MSFFNLLKSKPLGPLRSSNHEARRSQKHIVSPPKMTSPVGERIRYLPKPVGP 52

[Close]
BLAST of Cmc10g0262161 vs. ExPASy TrEMBL
Match: A4QM99 (ORF71b OS=Pinus koraiensis OX=88728 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-17
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MSFFSLLKSKPLGPLSGSNQGARRSQKRIVSPPKMTSPVGERIRYLPKPVGP 53
          MSFF+LL+SKPLGPL GSNQGARRSQKRIVSPPK+ SPVGERIRYLPKPVGP
Sbjct: 1  MSFFNLLRSKPLGPLRGSNQGARRSQKRIVSPPKIISPVGERIRYLPKPVGP 52

[Close]
BLAST of Cmc10g0262161 vs. ExPASy TrEMBL
Match: A0A0D3EEW0 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 0 

Query: 1  MSFFSLLKSKPLGPLSGSNQGARRSQKRIVSPPKMTSPVGERIRYLPKPV 51
          MSFF+LLKSKPLGPL GSNQGARRSQKRIVSPPK+TSPVGERI+YLPKPV
Sbjct: 21 MSFFNLLKSKPLGPLKGSNQGARRSQKRIVSPPKITSPVGERIKYLPKPV 70

[Close]
BLAST of Cmc10g0262161 vs. ExPASy TrEMBL
Match: A0A4U6TG58 (Uncharacterized protein OS=Setaria viridis OX=4556 GN=SEVIR_8G119460v2 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.6e-16
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MSFFSLLKSKPLGPLSGSNQGARRSQKRIVSPPKMTSPVGERIRYLPKPVGP 53
          MSF +LLKSKPLGPL GSN GARRSQK IVSPPK+TSP+GERIRYLPKPVGP
Sbjct: 1  MSFLNLLKSKPLGPLRGSNHGARRSQKCIVSPPKITSPIGERIRYLPKPVGP 52

The following BLAST results are available for this feature:
BLAST of Cmc10g0262161 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_001152193.18.4e-1790.38ORF71b [Pinus koraiensis] >ABP35436.1 ORF71b [Pinus koraiensis][more]
TKW00582.11.6e-1586.54hypothetical protein SEVIR_8G119460v2 [Setaria viridis][more]
KAG2570069.11.6e-1588.46hypothetical protein PVAP13_7KG182617 [Panicum virgatum][more]
BLAST of Cmc10g0262161 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc10g0262161 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A4QM994.1e-1790.38ORF71b OS=Pinus koraiensis OX=88728 PE=4 SV=1[more]
A0A0D3EEW01.2e-1692.00Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1[more]
A0A4U6TG587.6e-1686.54Uncharacterized protein OS=Setaria viridis OX=4556 GN=SEVIR_8G119460v2 PE=4 SV=1[more]
BLAST of Cmc10g0262161 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0262161.1Cmc10g0262161.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast