Cmc10g0262061 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0262061
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem I assembly protein Ycf3
Location	CMiso1.1chr10: 119980 .. 120884 (+)
RNA-Seq Expression	Cmc10g0262061
Synteny	Cmc10g0262061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAGAGAAAATTCGCTAATAAATACTAAAAAAAATAGGCTTTCTACATATGTATTGTCCAAACTAACGATTTGTATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGCAGAAATATGAAGAAATAGGTATGCCTAGATACTTTATTCTATGGATAAAGGATCTAATTGATAGAAGAAGCACCGTAAAGATCAATTAGTCAGGTTTTTGGCCGATACAATAAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCACTTATGTAATAGGGTGGATCCCCTACAATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGTAACGATAGTGGGTGGAATGCCTATGCTTTATTCTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATTGAAGTTTGAAACTTATATAATTAACCGCTTTTGCTTAACTCGAGAAAAAAAAATGGGCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGATAAATTTTTTTAAATATGGGACAGCAAAAGAATTGACT

mRNA sequence

GATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAGAGAAAATTCGCTAATAAATACTAAAAAAAATAGGCTTTCTACATATGTATTGTCCAAACTAACGATTTGTATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAGCAGAAATATGAAGAAATAGGTATGCCTAGATACTTTATTCTATGGATAAAGGATCTAATTGATAGAAGAAGCACCGTAAAGATCAATTAGTCAGGTTTTTGGCCGATACAATAAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCACTTATGTAATAGGGTGGATCCCCTACAATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGTAACGATAGTGGGTGGAATGCCTATGCTTTATTCTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATTGAAGTTTGAAACTTATATAATTAACCGCTTTTGCTTAACTCGAGAAAAAAAAATGGGCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGATAAATTTTTTTAAATATGGGACAGCAAAAGAATTGACT

Coding sequence (CDS)

ATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACAAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAG

Protein sequence

MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYVRLSPL

Homology

[Close]

BLAST of Cmc10g0262061 vs. NCBI nr
Match: YP_010149075.1 (hypothetical chloroplast RF34 [Castanopsis carlesii] >QQV69991.1 hypothetical chloroplast RF34 [Castanopsis carlesii])

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60

Query: 61 PFLPQAFNNMAVICHYVRLSPL 83
          PFLPQAFNNMAVICHYVRLSPL
Sbjct: 61 PFLPQAFNNMAVICHYVRLSPL 82

[Close]

BLAST of Cmc10g0262061 vs. NCBI nr
Match: YP_009341778.1 (hypothetical chloroplast RF34 [Castanopsis concinna] >ALN96498.1 hypothetical chloroplast RF34 [Castanopsis concinna])

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 48  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 107

Query: 61  PFLPQAFNNMAVICHYVRLSPL 83
           PFLPQAFNNMAVICHYVRLSPL
Sbjct: 108 PFLPQAFNNMAVICHYVRLSPL 129

[Close]

BLAST of Cmc10g0262061 vs. NCBI nr
Match: WP_202958889.1 (tetratricopeptide repeat protein [Solirubrobacter sp. CPCC 204708] >KAF4397628.1 hypothetical protein G4B88_027368 [Cannabis sativa])

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60

Query: 61 PFLPQAFNNMAVICHYVRLSPL 83
          PFLPQAFNNMAVICHYVRLSPL
Sbjct: 61 PFLPQAFNNMAVICHYVRLSPL 82

[Close]

BLAST of Cmc10g0262061 vs. NCBI nr
Match: AHM88684.1 (hypothetical chloroplast RF34 [Lagenaria siceraria] >AHM88743.1 hypothetical chloroplast RF34 [Lagenaria siceraria] >AHM88801.1 hypothetical chloroplast RF34 [Lagenaria siceraria] >AHM88859.1 hypothetical chloroplast RF34 [Lagenaria siceraria] >AHM88916.1 hypothetical chloroplast RF34 [Lagenaria siceraria])

HSP 1 Score: 171.4 bits (433), Expect = 3.2e-39
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEAL+NYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 44  MSAQSEGNYAEALENYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 103

Query: 61  PFLPQAFNNMAVICHYVRLSPL 83
           PFLPQAFNNMAVICHYVRLSPL
Sbjct: 104 PFLPQAFNNMAVICHYVRLSPL 125

[Close]

BLAST of Cmc10g0262061 vs. NCBI nr
Match: YP_009777019.1 (hypothetical chloroplast RF34 [Quercus coccinea] >QJA27824.1 hypothetical chloroplast RF34 [Quercus coccinea])

HSP 1 Score: 171.0 bits (432), Expect = 4.2e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 45  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 104

Query: 61  PFLPQAFNNMAVICHYVRLSP 82
           PFLPQAFNNMAVICHYVRLSP
Sbjct: 105 PFLPQAFNNMAVICHYVRLSP 125

[Close]

BLAST of Cmc10g0262061 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.4e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 44  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 103

Query: 61  PFLPQAFNNMAVICHY 77
           PFLPQAFNNMAVICHY
Sbjct: 104 PFLPQAFNNMAVICHY 119

[Close]

BLAST of Cmc10g0262061 vs. ExPASy Swiss-Prot
Match: Q09X16 (Photosystem I assembly protein Ycf3 OS=Morus indica OX=248361 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.4e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 43  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 102

Query: 61  PFLPQAFNNMAVICHY 77
           PFLPQAFNNMAVICHY
Sbjct: 103 PFLPQAFNNMAVICHY 118

[Close]

BLAST of Cmc10g0262061 vs. ExPASy Swiss-Prot
Match: P61843 (Photosystem I assembly protein Ycf3 OS=Arabidopsis thaliana OX=3702 GN=ycf3 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERN
Sbjct: 43  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102

Query: 61  PFLPQAFNNMAVICHY 77
           PFLPQAFNNMAVICHY
Sbjct: 103 PFLPQAFNNMAVICHY 118

[Close]

BLAST of Cmc10g0262061 vs. ExPASy Swiss-Prot
Match: Q8S8X3 (Photosystem I assembly protein Ycf3 OS=Atropa belladonna OX=33113 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERN
Sbjct: 43  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102

Query: 61  PFLPQAFNNMAVICHY 77
           PFLPQAFNNMAVICHY
Sbjct: 103 PFLPQAFNNMAVICHY 118

[Close]

BLAST of Cmc10g0262061 vs. ExPASy Swiss-Prot
Match: Q53CF3 (Photosystem I assembly protein Ycf3 OS=Brassica juncea OX=3707 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERN
Sbjct: 43  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 102

Query: 61  PFLPQAFNNMAVICHY 77
           PFLPQAFNNMAVICHY
Sbjct: 103 PFLPQAFNNMAVICHY 118

[Close]

BLAST of Cmc10g0262061 vs. ExPASy TrEMBL
Match: A0A7J6HSE8 (TPR_REGION domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_027368 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60

Query: 61 PFLPQAFNNMAVICHYVRLSPL 83
          PFLPQAFNNMAVICHYVRLSPL
Sbjct: 61 PFLPQAFNNMAVICHYVRLSPL 82

[Close]

BLAST of Cmc10g0262061 vs. ExPASy TrEMBL
Match: A0A1N7TDX0 (Photosystem I assembly protein Ycf3 OS=Castanopsis concinna OX=1754207 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 48  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 107

Query: 61  PFLPQAFNNMAVICHYVRLSPL 83
           PFLPQAFNNMAVICHYVRLSPL
Sbjct: 108 PFLPQAFNNMAVICHYVRLSPL 129

[Close]

BLAST of Cmc10g0262061 vs. ExPASy TrEMBL
Match: A0A7U0IVV2 (Hypothetical chloroplast RF34 OS=Castanopsis carlesii OX=167382 GN=ycf3 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60

Query: 61 PFLPQAFNNMAVICHYVRLSPL 83
          PFLPQAFNNMAVICHYVRLSPL
Sbjct: 61 PFLPQAFNNMAVICHYVRLSPL 82

[Close]

BLAST of Cmc10g0262061 vs. ExPASy TrEMBL
Match: X2F3U2 (Hypothetical chloroplast RF34 OS=Lagenaria siceraria OX=3668 GN=ycf3 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEAL+NYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 44  MSAQSEGNYAEALENYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 103

Query: 61  PFLPQAFNNMAVICHYVRLSPL 83
           PFLPQAFNNMAVICHYVRLSPL
Sbjct: 104 PFLPQAFNNMAVICHYVRLSPL 125

[Close]

BLAST of Cmc10g0262061 vs. ExPASy TrEMBL
Match: A0A6H1YHQ0 (Photosystem I assembly protein Ycf3 OS=Quercus coccinea OX=354624 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1   MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
           MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN
Sbjct: 45  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 104

Query: 61  PFLPQAFNNMAVICHYVRLSP 82
           PFLPQAFNNMAVICHYVRLSP
Sbjct: 105 PFLPQAFNNMAVICHYVRLSP 125

[Close]

BLAST of Cmc10g0262061 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-39
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 60
          MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERN
Sbjct: 1  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN 60

Query: 61 PFLPQAFNNMAVICHY 77
          PFLPQAFNNMAVICHY
Sbjct: 61 PFLPQAFNNMAVICHY 76

[Close]

BLAST of Cmc10g0262061 vs. TAIR 10
Match: AT3G11540.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 1.9e-05
Identity = 28/73 (38.36%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 2   SAQSEGNYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 61
           S +  GN  E +Q YYEA  L+IDP Y  +Y  YN+G++++   ++  AL  Y +A    
Sbjct: 161 SLKLAGNTQEGIQKYYEA--LKIDPHYAPAY--YNLGVVYSEMMQYDNALSCYEKAALER 220

Query: 62  PFLPQAFNNMAVI 74
           P   +A+ NM VI
Sbjct: 221 PMYAEAYCNMGVI 229

[Close]

BLAST of Cmc10g0262061 vs. TAIR 10
Match: AT3G11540.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 2   SAQSEGNYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTRNGEHTKALEYYFRALERN 61
           S +  GN  E +Q YYEA  L+IDP Y  +Y  YN+G++++   ++  AL  Y +A    
Sbjct: 161 SLKLAGNTQEGIQKYYEA--LKIDPHYAPAY--YNLGVVYSEMMQYDNALSCYEKAALER 220

Query: 62  PFLPQAFNNM 71
           P   +A+ NM
Sbjct: 221 PMYAEAYCNM 226

The following BLAST results are available for this feature:

BLAST of Cmc10g0262061 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010149075.1	1.4e-39	100.00	hypothetical chloroplast RF34 [Castanopsis carlesii] >QQV69991.1 hypothetical ch...	[more]
YP_009341778.1	1.4e-39	100.00	hypothetical chloroplast RF34 [Castanopsis concinna] >ALN96498.1 hypothetical ch...	[more]
WP_202958889.1	1.4e-39	100.00	tetratricopeptide repeat protein [Solirubrobacter sp. CPCC 204708] >KAF4397628.1...	[more]
AHM88684.1	3.2e-39	98.78	hypothetical chloroplast RF34 [Lagenaria siceraria] >AHM88743.1 hypothetical chl...	[more]
YP_009777019.1	4.2e-39	100.00	hypothetical chloroplast RF34 [Quercus coccinea] >QJA27824.1 hypothetical chloro...	[more]

BLAST of Cmc10g0262061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH4	3.4e-39	100.00	Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1	[more]
Q09X16	3.4e-39	100.00	Photosystem I assembly protein Ycf3 OS=Morus indica OX=248361 GN=ycf3 PE=3 SV=1	[more]
P61843	1.7e-38	98.68	Photosystem I assembly protein Ycf3 OS=Arabidopsis thaliana OX=3702 GN=ycf3 PE=1...	[more]
Q8S8X3	1.7e-38	98.68	Photosystem I assembly protein Ycf3 OS=Atropa belladonna OX=33113 GN=ycf3 PE=3 S...	[more]
Q53CF3	1.7e-38	98.68	Photosystem I assembly protein Ycf3 OS=Brassica juncea OX=3707 GN=ycf3 PE=3 SV=1	[more]

BLAST of Cmc10g0262061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6HSE8	7.0e-40	100.00	TPR_REGION domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_027368 ...	[more]
A0A1N7TDX0	7.0e-40	100.00	Photosystem I assembly protein Ycf3 OS=Castanopsis concinna OX=1754207 GN=ycf3 P...	[more]
A0A7U0IVV2	7.0e-40	100.00	Hypothetical chloroplast RF34 OS=Castanopsis carlesii OX=167382 GN=ycf3 PE=4 SV=...	[more]
X2F3U2	1.6e-39	98.78	Hypothetical chloroplast RF34 OS=Lagenaria siceraria OX=3668 GN=ycf3 PE=4 SV=1	[more]
A0A6H1YHQ0	2.0e-39	100.00	Photosystem I assembly protein Ycf3 OS=Quercus coccinea OX=354624 GN=ycf3 PE=3 S...	[more]

BLAST of Cmc10g0262061 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00360.1	1.2e-39	98.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G11540.1	1.9e-05	38.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G11540.2	1.6e-04	37.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 30..63 e-value: 3.2E-5 score: 33.4
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 30..63 score: 10.8564
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 31..61 e-value: 1.4E-9 score: 37.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..78 e-value: 2.4E-15 score: 58.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 3..75
None	No IPR available	PANTHER	PTHR26312:SF158	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3	coord: 2..82
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 2..82
None	No IPR available	PROSITE	PS50293	TPR_REGION	coord: 30..61 score: 9.159513

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0262061.1	Cmc10g0262061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0005515	protein binding