Cmc10g0261811 (gene) Melon (Charmono) v1.1

Overview
NameCmc10g0261811
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description50S ribosomal protein L20, chloroplastic
LocationCMiso1.1chr10: 94944 .. 97194 (+)
RNA-Seq ExpressionCmc10g0261811
SyntenyCmc10g0261811
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTGGAGAATGAACTCCGAGAAGGTAGAGTAGAAATTAGTATGATAAAATATGATAAAGTGGTCAAAATGAGCAAATATGTTCAATAAAAAAAAAACGATTTATTCTTCTTCCACTATTCTTTCTTTTTCTTACGACACGACAATCGAATCTAGATTTTCGGATTTTTCGAACAAAGAATCAATCTGCGGTTGAGTTTGGATTAGAATTTTAATTCAATTAAAGAGTAAGCTAAGTCTATTTATTCCTGGTTCTAAGACCAATAGTTCTAGCGGTCGACTCGCTTCTTTCAAATTGTTTCTCATTATTAAGAAAAGGTAACAAAGATAAAATACGAGCTTGTTTTATAGCAATAGTAATTAAGCGTTGCTGTTTTAAGGTCAATCTATTTACCCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTCTATAATCAATTCGATCCCCCGATGGAATCGGGGGCAAACGCCTACGAAAAGATCGTTTGGATTTAAGAAAGAGTCGCTTGGATTTATCCATGGTTTTTTTATTCCTTATCCCGAAAATCCTATTTCTTAATTCTAAATCATTTTAGATCCGATCGAAATAGGATTTGGTTTGTTTATATTTAAATCTAAAATATGTCTAATATATGTAATTTTTCATCTTCCTTGGATTGGAAAAGGGTGACACACAGCCGATCGGTTCGATCTATTTCTTTATCTCCCCATGAATCGTATGTTTGTAACACCGGGGACAGAATTTTCTCAATTCCAATCGACTAGGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATCCCTATTGATTCCTTATTAACACCGTTTCGAACACAACGAGTACATTCCAAAATAACAGTTACTCGGGCATCTTTACCCTTGGCCATGAACCTCCCTTGGATTTTTGATTCACGCAACTCTTCCATTTTCCGATCCAAAATGAAGAAAAAAAGAAAAATTGGTAACTCGAAATAAAATTATGAAAGATTTCGTTACAATCAAATATTAAAATATAGTAATACAATAATTTCTAAATTTAGAATCGCAGTACAGTTTTTCATTTAAGTATTTTGTATGATATTGTTGCCCTAGCCATCACATTTTCATTTTCGTTCTCACTCTTTTATTAATTAAATTTGAACCTGGCGCCGCGTCCGAGTTTGACTGAGGTTGAATCCATTTTGATTCTTTCTAACTTATTCTAAGTCTAAAAACTCTAAAAAAAAGAAGGGGGAAGGGGATTAGTCAAAGATATTTGATTGTTTTTCTAATCTTCTTCACCCCTTCCCAAGTCAATAACTAGAATGAAAAAAACGGGAATACCAACGCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAAAGCCCCGAACCATATAGTACTTACTACCGGTGCCACGGAGAGATATGTTTTTAGATCTCGCATTGAAAACCCTCCTACTTTATAGTAATTTGTAATACATACTGGTATTACATACCATCAAATGTATATATAGTTAATAACCGCTTGTATTGTCCGCGGAATTCCTAATTCAAATTGAAATGTACAACAGTTCAATTCGGTAGATATTCCCTTTTTTATTAAAAAAAATATGTAGCTTTCCGCCCCACCCCAAATATTCATTTTTCTTTACGGCGGATTTAATATTTATTATTTCATACGTATATAAGTCTTTTTATTATTTTTATTATATTTTATATATGATATGAGACAAAAAAGAAGAAATGGCAAGATAATTTGTGTATACCAATGGAGGAAATAAATAAAAAATGTGGAAAACAAGACAGGGATTCTCTACAATAACACTGTAGACCAATTG

mRNA sequence

ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTGGAGAATGAACTCCGAGAAGGTAGAGTAGAAATTAGTATGATAAAATATGATAAAGTGGTCAAAATGAGCAAATATGTTCAATAAAAAAAAAACGATTTATTCTTCTTCCACTATTCTTTCTTTTTCTTACGACACGACAATCGAATCTAGATTTTCGGATTTTTCGAACAAAGAATCAATCTGCGGTTGAGTTTGGATTAGAATTTTAATTCAATTAAAGAGTAAGCTAAGTCTATTTATTCCTGGTTCTAAGACCAATAGTTCTAGCGGTCGACTCGCTTCTTTCAAATTGTTTCTCATTATTAAGAAAAGGTAACAAAGATAAAATACGAGCTTGTTTTATAGCAATAGTAATTAAGCGTTGCTGTTTTAAGGTCAATCTATTTACCCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTCTATAATCAATTCGATCCCCCGATGGAATCGGGGGCAAACGCCTACGAAAAGATCGTTTGGATTTAAGAAAGAGTCGCTTGGATTTATCCATGGTTTTTTTATTCCTTATCCCGAAAATCCTATTTCTTAATTCTAAATCATTTTAGATCCGATCGAAATAGGATTTGGTTTGTTTATATTTAAATCTAAAATATGTCTAATATATGTAATTTTTCATCTTCCTTGGATTGGAAAAGGGTGACACACAGCCGATCGGTTCGATCTATTTCTTTATCTCCCCATGAATCGTATGTTTGTAACACCGGGGACAGAATTTTCTCAATTCCAATCGACTAGGCGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAATCCCTATTGATTCCTTATTAACACCGTTTCGAACACAACGAGTACATTCCAAAATAACAGTTACTCGGGCATCTTTACCCTTGGCCATGAACCTCCCTTGGATTTTTGATTCACGCAACTCTTCCATTTTCCGATCCAAAATGAAGAAAAAAAGAAAAATTGGTAACTCGAAATAAAATTATGAAAGATTTCGTTACAATCAAATATTAAAATATAGTAATACAATAATTTCTAAATTTAGAATCGCAGTACAGTTTTTCATTTAAGTATTTTGTATGATATTGTTGCCCTAGCCATCACATTTTCATTTTCGTTCTCACTCTTTTATTAATTAAATTTGAACCTGGCGCCGCGTCCGAGTTTGACTGAGGTTGAATCCATTTTGATTCTTTCTAACTTATTCTAAGTCTAAAAACTCTAAAAAAAAGAAGGGGGAAGGGGATTAGTCAAAGATATTTGATTGTTTTTCTAATCTTCTTCACCCCTTCCCAAGTCAATAACTAGAATGAAAAAAACGGGAATACCAACGCATCCGGGAATAAACGATTGATCTCGATTAATAGACCCGCTAAAGCCCCGAACCATATAGTACTTACTACCGGTGCCACGGAGAGATATGTTTTTAGATCTCGCATTGAAAACCCTCCTACTTTATAGTAATTTGTAATACATACTGGTATTACATACCATCAAATGTATATATAGTTAATAACCGCTTGTATTGTCCGCGGAATTCCTAATTCAAATTGAAATGTACAACAGTTCAATTCGGTAGATATTCCCTTTTTTATTAAAAAAAATATGTAGCTTTCCGCCCCACCCCAAATATTCATTTTTCTTTACGGCGGATTTAATATTTATTATTTCATACGTATATAAGTCTTTTTATTATTTTTATTATATTTTATATATGATATGAGACAAAAAAGAAGAAATGGCAAGATAATTTGTGTATACCAATGGAGGAAATAAATAAAAAATGTGGAAAACAAGACAGGGATTCTCTACAATAACACTGTAGACCAATTG

Coding sequence (CDS)

ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCGATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATACGAAGATTGCAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTGGAGAATGA

Protein sequence

MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYEDCKESSGMLKMEFSGE
Homology
[Close]
BLAST of Cmc10g0261811 vs. NCBI nr
Match: YP_004841806.1 (ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal protein L20 [Cucumis melo subsp. agrestis] >ASY96631.1 ribosomal protein L20 [Cucumis melo var. conomon] >ASY96719.1 ribosomal protein L20 [Cucumis melo var. makuwa] >ASY96806.1 ribosomal protein L20 [Cucumis melo var. momordica] >ASY96893.1 ribosomal protein L20 [Cucumis melo var. dudaim] >ASY96980.1 ribosomal protein L20 [Cucumis melo var. cantalupo] >ASY97154.1 ribosomal protein L20 [Cucumis melo var. inodorus] >ASY97328.1 ribosomal protein L20 [Cucumis melo var. flexuosus] >QJF46406.1 ribosomal protein L20 [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 7.4e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120

Query: 121 CKESSGMLKMEFSGE 136
           CKESSGMLKMEFSGE
Sbjct: 121 CKESSGMLKMEFSGE 135

[Close]
BLAST of Cmc10g0261811 vs. NCBI nr
Match: YP_009752182.1 (ribosomal protein L20 [Linnaeosicyos amara] >QIT05592.1 ribosomal protein L20 [Linnaeosicyos amara])

HSP 1 Score: 232.3 bits (591), Expect = 2.5e-57
Identity = 126/135 (93.33%), Postives = 128/135 (94.81%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDR RQKRNFR+L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRSRQKRNFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WI RINAVIR NKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEI   ED
Sbjct: 61  WITRINAVIRYNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEI---ED 120

Query: 121 CKESSGMLKMEFSGE 136
            +ESSGMLKMEFSGE
Sbjct: 121 WEESSGMLKMEFSGE 132

[Close]
BLAST of Cmc10g0261811 vs. NCBI nr
Match: YP_009439914.1 (ribosomal protein L20 [Gynostemma caulopterum] >ATG86764.1 ribosomal protein L20 [Gynostemma caulopterum])

HSP 1 Score: 230.7 bits (587), Expect = 7.4e-57
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRG+ KRNFR L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGKLKRNFRHL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQIAILNRNCLYM+SNEI K +D
Sbjct: 61  WIARINAVIRYNKVYYSYSRFIHNLYKKQLLLNRKILAQIAILNRNCLYMVSNEIRKSKD 120

Query: 121 CKESSGMLKMEFSGE 136
            KESSGM KMEFSGE
Sbjct: 121 WKESSGMFKMEFSGE 135

[Close]
BLAST of Cmc10g0261811 vs. NCBI nr
Match: YP_009468884.1 (ribosomal protein L20 [Gynostemma compressum] >AVA29855.1 ribosomal protein L20 [Gynostemma compressum])

HSP 1 Score: 227.3 bits (578), Expect = 8.2e-56
Identity = 121/135 (89.63%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRL RTITQQKIRALASAY+DRG+ KRNFR L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLNRTITQQKIRALASAYQDRGKLKRNFRHL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WIARINAVIR NKV YSYSRFIHNLYK+QLLLNRKILAQIAILNRNCLYM+SNEI K +D
Sbjct: 61  WIARINAVIRYNKVYYSYSRFIHNLYKKQLLLNRKILAQIAILNRNCLYMVSNEIRKSKD 120

Query: 121 CKESSGMLKMEFSGE 136
            KESSGM KMEFSGE
Sbjct: 121 WKESSGMFKMEFSGE 135

[Close]
BLAST of Cmc10g0261811 vs. NCBI nr
Match: YP_009317409.1 (ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [Citrullus colocynthis] >YP_009431665.1 ribosomal protein L20 [Citrullus rehmii] >YP_009456169.1 ribosomal protein L20 [Lagenaria siceraria] >YP_009752350.1 ribosomal protein L20 [Bryonia marmorata] >YP_010131117.1 ribosomal protein L20 [Benincasa hispida] >QHB75986.1 ribosomal protein L20 [Cucumis melo subsp. melo] >QNM38554.1 ribosomal protein L20 [Lagenaria siceraria var. microcarpa] >QZL38616.1 ribosomal protein L20 [Citrullus naudinianus] >AHM88712.1 ribosomal protein L20 [Lagenaria siceraria] >AHM88771.1 ribosomal protein L20 [Lagenaria siceraria])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Cmc10g0261811 vs. ExPASy Swiss-Prot
Match: Q4VZJ4 (50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.0e-56
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSN VDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of Cmc10g0261811 vs. ExPASy Swiss-Prot
Match: Q68RY3 (50S ribosomal protein L20, chloroplastic OS=Panax ginseng OX=4054 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-50
Identity = 106/128 (82.81%), Postives = 116/128 (90.62%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRI+RGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL S++RDR RQKRNFR+L
Sbjct: 1   MTRIRRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSSHRDRDRQKRNFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WI RINAVIR   V YSYSR IH+LYK+QLLLNRKILAQIAI N+NCLYMISNEIIK  D
Sbjct: 61  WITRINAVIREGGVSYSYSRLIHDLYKKQLLLNRKILAQIAISNKNCLYMISNEIIKEVD 120

Query: 121 CKESSGML 129
            KES+G++
Sbjct: 121 WKESTGII 128

[Close]
BLAST of Cmc10g0261811 vs. ExPASy Swiss-Prot
Match: Q7FNS5 (50S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.1e-50
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRKKRDFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK  D
Sbjct: 61  WITRINAVIRERGVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIKEVD 120

Query: 121 CKESSGML 129
            KES+ ++
Sbjct: 121 WKESTRII 128

[Close]
BLAST of Cmc10g0261811 vs. ExPASy Swiss-Prot
Match: Q3C1K6 (50S ribosomal protein L20, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.1e-50
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRKKRDFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK  D
Sbjct: 61  WITRINAVIRERGVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIKEVD 120

Query: 121 CKESSGML 129
            KES+ ++
Sbjct: 121 WKESTRII 128

[Close]
BLAST of Cmc10g0261811 vs. ExPASy Swiss-Prot
Match: Q33C09 (50S ribosomal protein L20, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.1e-50
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRKKRDFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK  D
Sbjct: 61  WITRINAVIRERGVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIKEVD 120

Query: 121 CKESSGML 129
            KES+ ++
Sbjct: 121 WKESTRII 128

[Close]
BLAST of Cmc10g0261811 vs. ExPASy TrEMBL
Match: A0A249RZK5 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120

Query: 121 CKESSGMLKMEFSGE 136
           CKESSGMLKMEFSGE
Sbjct: 121 CKESSGMLKMEFSGE 135

[Close]
BLAST of Cmc10g0261811 vs. ExPASy TrEMBL
Match: A0A1S4EU28 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo OX=3656 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120

Query: 121 CKESSGMLKMEFSGE 136
           CKESSGMLKMEFSGE
Sbjct: 121 CKESSGMLKMEFSGE 135

[Close]
BLAST of Cmc10g0261811 vs. ExPASy TrEMBL
Match: A0A286NG26 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120

Query: 121 CKESSGMLKMEFSGE 136
           CKESSGMLKMEFSGE
Sbjct: 121 CKESSGMLKMEFSGE 135

[Close]
BLAST of Cmc10g0261811 vs. ExPASy TrEMBL
Match: A0A249RY24 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120

Query: 121 CKESSGMLKMEFSGE 136
           CKESSGMLKMEFSGE
Sbjct: 121 CKESSGMLKMEFSGE 135

[Close]
BLAST of Cmc10g0261811 vs. ExPASy TrEMBL
Match: A0A249RZ58 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. dudaim OX=2034236 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIKYED 120

Query: 121 CKESSGMLKMEFSGE 136
           CKESSGMLKMEFSGE
Sbjct: 121 CKESSGMLKMEFSGE 135

[Close]
BLAST of Cmc10g0261811 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-45
Identity = 94/117 (80.34%), Postives = 107/117 (91.45%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WI RINAVI    V YSY+ FIHNLYK+QLLLNRKILAQIA+LNR+CLY ISN+I K
Sbjct: 61  WITRINAVIHEMGVFYSYNEFIHNLYKKQLLLNRKILAQIALLNRSCLYTISNDIKK 117

[Close]
BLAST of Cmc10g0261811 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-09
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0 

Query: 14  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNK 73
           + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + 
Sbjct: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQHG 62

Query: 74  VDYSYSRFIHNLYKRQLLLNRKILAQIAI 103
           V  +Y  FIH L K  + LNRK+L+++++
Sbjct: 63  V--NYGNFIHGLMKENIQLNRKVLSELSM 89

The following BLAST results are available for this feature:
BLAST of Cmc10g0261811 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_004841806.17.4e-65100.00ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal prote... [more]
YP_009752182.12.5e-5793.33ribosomal protein L20 [Linnaeosicyos amara] >QIT05592.1 ribosomal protein L20 [L... [more]
YP_009439914.17.4e-5791.11ribosomal protein L20 [Gynostemma caulopterum] >ATG86764.1 ribosomal protein L20... [more]
YP_009468884.18.2e-5689.63ribosomal protein L20 [Gynostemma compressum] >AVA29855.1 ribosomal protein L20 ... [more]
YP_009317409.11.0e-53100.00ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [... [more]
BLAST of Cmc10g0261811 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZJ45.0e-5699.1550S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=... [more]
Q68RY31.1e-5082.8150S ribosomal protein L20, chloroplastic OS=Panax ginseng OX=4054 GN=rpl20 PE=3 ... [more]
Q7FNS54.1e-5083.5950S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 ... [more]
Q3C1K64.1e-5083.5950S ribosomal protein L20, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl2... [more]
Q33C094.1e-5083.5950S ribosomal protein L20, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN... [more]
BLAST of Cmc10g0261811 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A249RZK53.6e-65100.0050S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3... [more]
A0A1S4EU283.6e-65100.0050S ribosomal protein L20, chloroplastic OS=Cucumis melo OX=3656 GN=rpl20 PE=3 S... [more]
A0A286NG263.6e-65100.0050S ribosomal protein L20, chloroplastic OS=Cucumis melo var. flexuosus OX=11207... [more]
A0A249RY243.6e-65100.0050S ribosomal protein L20, chloroplastic OS=Cucumis melo subsp. agrestis OX=2176... [more]
A0A249RZ583.6e-65100.0050S ribosomal protein L20, chloroplastic OS=Cucumis melo var. dudaim OX=2034236 ... [more]
BLAST of Cmc10g0261811 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00660.11.1e-4580.34ribosomal protein L20 [more]
AT1G16740.14.7e-0939.33Ribosomal protein L20 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 42..71
score: 57.37
coord: 77..103
score: 52.86
coord: 12..41
score: 42.32
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..108
e-value: 6.0E-33
score: 113.1
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 1..113
e-value: 6.5E-28
score: 95.3
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..115
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 54..70
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 2..117
score: 24.864826
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 6..113
e-value: 1.97017E-39
score: 126.445
NoneNo IPR availableGENE3D6.10.160.10coord: 3..55
e-value: 4.3E-12
score: 47.9
NoneNo IPR availablePANTHERPTHR10986:SF1239S RIBOSOMAL PROTEIN L20, MITOCHONDRIALcoord: 1..115
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20Ribosomal protein L20coord: 56..118
e-value: 1.7E-20
score: 74.3
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc10g0261811.1Cmc10g0261811.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome