Cmc10g0261721 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0261721
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit alpha
Location	CMiso1.1chr10: 84852 .. 87886 (+)
RNA-Seq Expression	Cmc10g0261721
Synteny	Cmc10g0261721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAAGAGAAATAAATAATTCAATGATTTTATCAAAAAATATTACTATGGTTCGAGAGAAAATCAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGACAAGGGGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTTTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTTAAAAATAATAAACAAAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCGAAACTAAGAAAAAAGAAAAAAGAAAGAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTGCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATCAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGCATAAATTTGAAATCCATTGGATTTTTGTTGTAAAAAAACTTTATAAAAAAAAAAGACGAAAATGAAGTTTGAATCTTTAACAGAATCCGTATACTCAAAATAAATCAAAAATTTCATTAAATATGTGTATCTAGGGGTAATTCACTTTGAAGCAACTATTCCCTAGATACACACATCGTGATATTTTATTTATTTCACAATTGAATCAATTTAAAAAAGCCCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGAGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAATGGTACAGTTAATAATCCCGCCGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTGTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATGACTACTGGAAAAATATATAAAAGATCATTGGGCCATGCGGGTTCTCCGTAATAATTATGACCCATACCCTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAATCTGGTTTTTTTGTTATTAGGATAGGTGAATTATTATGGATCCATCCCCCGAAAGAACCGGACATGATAATTTTTCATCATCCGGCTCGAGCACAAATCAAACGAACCAACTGGATCCAGAAAAAAAAATCGATATCTTATCCAAGCATATATAAAATAAATGAGTGATTCAATGTAAGAAAAAATTTAGCGGATTCCGTTTTCAAGAGTTACAATTATCCATTGCAAGGAATTAAGTTCGTACAGATAAATGCTCAATACCCAAGTAGGCTTACAAAGTTGATAATGTTCAAGTGCTTTCTGGGTCGTCTCAAACCTTGCGATGGGGCTTTAGCCCCCAAAAATATTGATACTTTTTACATCCAAAGGATTTACTTGTTACTAATAGAGTCTAGCCTATGTTCTTCTTTAGATCCCTTGTTTCACTCCGATAGTATTATAAATCGAGTCAATGCAGAGGAAATGAATGCATTTTCATACTATTAAGTAAGTGAAATAGATAAAACATAATCTGTATTATGGCATATATATCACCTATTCTAATGGATCTTACGGAGCCTGGTCATGCACGACATGGTCAAGTCTGATCATGGAAAAGATTCTCTTCAAGCGAACCAGCCTACCCTCTGTATGGAGCTTTCGCGGTGGTTGGAATAAAGACACATTTTGTTGTGAATCCCAATGTGGCAGATAAAAAGACATATATCTACACGGTCCAATCAATAGTTCAAGTCACACACTCCCATAATCCATTTTCTCTTCGAAGAATTCCCTTCAACTATTATTGAAAAATAACGAATAAAATTTCGTGGAGTTGAAGGGAAATATCCAAATACATGTCTTATTTTTCAATAATCCATATTTGCAGCAATGAAATACTCTTCTTCCCCCCTGAGTAATCATAAATAACTAATTACAAATCTATGATTTCTATTCTCTATAAAGGACCAGAAATGCCTTGCTTACGTATCATTGGGAAGTGCATTAACATAAATACGGCAGTAAGAAGAGGTAATACAAAAGTGTGTAAACTATAAAAACGAGTCAAGGTAGATTGTCCCACACTAGCACTTCCGCGTAATAACTCTACCAAAGGCGACCCTATTACTGGAATAGCTTCCGGTACACCTGTTACAATTTTGACTGCCCAATAACCAATTTGGTCCCGAGGTAAGGAATAACCAGTTACACCAAAGGATGCGGTCAATACAGCCAGAACCACACCTGTAACCCAAGTCAATTCACGAGGTTTTTTAAATCCACCAGTAAGATACACGCGAAATACGTGCAGGATCATCATTAAGACCATCATACTTGCCG

mRNA sequence

TTTCAAGAGAAATAAATAATTCAATGATTTTATCAAAAAATATTACTATGGTTCGAGAGAAAATCAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGACAAGGGGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTTTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTTAAAAATAATAAACAAAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCGAAACTAAGAAAAAAGAAAAAAGAAAGAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTGCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATCAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGCATAAATTTGAAATCCATTGGATTTTTGTTGTAAAAAAACTTTATAAAAAAAAAAGACGAAAATGAAGTTTGAATCTTTAACAGAATCCGTATACTCAAAATAAATCAAAAATTTCATTAAATATGTGTATCTAGGGGTAATTCACTTTGAAGCAACTATTCCCTAGATACACACATCGTGATATTTTATTTATTTCACAATTGAATCAATTTAAAAAAGCCCTAAAGTTAGGGATTTATCAATCGGTAATGTTGCTCCAATACCCAACCAAAGAGCTACTGCGGTACCAATCAAAAAGACGGTTGTCGCTACTGGACGACGAAATGGATTTTGGAATTTATTGACATTCTCCAAAAATGGTACAGTTAATAATCCCGCCGGTACGGAAACCATTAAAAGAACACCCAATAACTTATTTGGCACTGTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCCGGCAATATTTCCAAAGGAGTTGCAAATGGATCTGCGGGTTCACCAATCATTGATGGTTCTAGAACCGCTAAGCCCACGTTACATGCAATAGTACCTAGAATGACTACTGGAAAAATATATAAAAGATCATTGGGCCATGCGGGTTCTCCGTAATAATTATGACCCATACCCTTAGCCAATTTAGCTCTTAATACAGGATCATTCAAATCTGGTTTTTTTTTCAAGTCACACACTCCCATAATCCATTTTCTCTTCGAAGAATTCCCTTCAACTATTATTGAAAAATAACGAATAAAATTTCGTGGAGTTGAAGGGAAATATCCAAATACATGTCTTATTTTTCAATAATCCATATTTGCAGCAATGAAATACTCTTCTTCCCCCCTGAGTAATCATAAATAACTAATTACAAATCTATGATTTCTATTCTCTATAAAGGACCAGAAATGCCTTGCTTACGTATCATTGGGAAGTGCATTAACATAAATACGGCAGTAAGAAGAGGTAATACAAAAGTGTGTAAACTATAAAAACGAGTCAAGGTAGATTGTCCCACACTAGCACTTCCGCGTAATAACTCTACCAAAGGCGACCCTATTACTGGAATAGCTTCCGGTACACCTGTTACAATTTTGACTGCCCAATAACCAATTTGGTCCCGAGGTAAGGAATAACCAGTTACACCAAAGGATGCGGTCAATACAGCCAGAACCACACCTGTAACCCAAGTCAATTCACGAGGTTTTTTAAATCCACCAGTAAGATACACGCGAAATACGTGCAGGATCATCATTAAGACCATCATACTTGCCG

Coding sequence (CDS)

ATGATTTTATCAAAAAATATTACTATGGTTCGAGAGAAAATCAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGACAAGGGGATACTATAGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTTTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAAACAAGAGATACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTTAAAAATAATAAACAAAAAGTTACTTTACCCCTTTTTACTTTTCATGAGAAATTGGCGAAACTAAGAAAAAAGAAAAAAGAAAGAGCATTAAAATATATTTTTATTGACCAATCAGAATTGCCTCCTAGGATCTATAATTGCCTCAAAAGGTGCAATATACATACATTATTTGACCTTTTGAATAATAGTCCAGACGAACTTATGAAAATCAAACATTTTCGCATAGAAGACGTAAAACATATATTAGACATTCTCGAAATGGAAAAGAATTTTGCATAA

Protein sequence

MILSKNITMVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHFKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFA

Homology

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BLAST of Cmc10g0261721 vs. NCBI nr
Match: QJF46416.1 (RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 688.7 bits (1776), Expect = 2.5e-194
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0


Query: 1   MILSKNITMVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKA 60
           MILSKNITMVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKA
Sbjct: 1   MILSKNITMVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKA 60

Query: 61  LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKG 120
           LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKG
Sbjct: 61  LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKG 120

Query: 121 PGCVTAQDIILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPM 180
           PGCVTAQDIILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPM
Sbjct: 121 PGCVTAQDIILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPM 180

Query: 181 DAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHA 240
           DAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHA
Sbjct: 181 DAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHA 240

Query: 241 EEEKENFHFKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRC 300
           EEEKENFHFKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRC
Sbjct: 241 EEEKENFHFKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRC 300

Query: 301 NIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           NIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 NIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 341

[Close]

BLAST of Cmc10g0261721 vs. NCBI nr
Match: YP_004841815.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA polymerase alpha subunit [Cucumis melo subsp. agrestis] >ASY96605.1 RNA polymerase alpha subunit [Cucumis melo var. conomon] >ASY96692.1 RNA polymerase alpha subunit [Cucumis melo var. makuwa] >ASY96779.1 RNA polymerase alpha subunit [Cucumis melo var. momordica] >ASY96866.1 RNA polymerase alpha subunit [Cucumis melo var. dudaim] >ASY96953.1 RNA polymerase alpha subunit [Cucumis melo var. cantalupo] >ASY97127.1 RNA polymerase alpha subunit [Cucumis melo var. inodorus] >ASY97301.1 RNA polymerase alpha subunit [Cucumis melo var. flexuosus] >QRW36587.1 RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 675.2 bits (1741), Expect = 2.9e-190
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
           FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333

[Close]

BLAST of Cmc10g0261721 vs. NCBI nr
Match: YP_009346515.1 (RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alpha subunit [Cucumis x hytivus] >QCY72874.1 RpoA [Cucumis hystrix])

HSP 1 Score: 665.2 bits (1715), Expect = 3.0e-187
Identity = 329/333 (98.80%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANL EPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
            KNNKQKVTLPLFTFHEKLAKLRKKKKE ALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 LKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333

[Close]

BLAST of Cmc10g0261721 vs. NCBI nr
Match: YP_009004075.1 (RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha subunit [Cucumis sativus] >Q4VZK3.1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha [Cucumis sativus] >ALF03334.1 RNA polymerase alpha subunit [Cucumis sativus var. hardwickii] >AVE15363.1 RpoA [Cucumis sativus var. sativus] >AAZ94682.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI97448.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI98777.1 RNA polymerase alpha subunit [Cucumis sativus])

HSP 1 Score: 663.7 bits (1711), Expect = 8.6e-187
Identity = 328/333 (98.50%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANL EPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
            KNNK+KVTLPLFTFHEKLAKLRKKKKE ALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 LKNNKKKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333

[Close]

BLAST of Cmc10g0261721 vs. NCBI nr
Match: QHB75996.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo])

HSP 1 Score: 656.4 bits (1692), Expect = 1.4e-184
Identity = 327/333 (98.20%), Postives = 327/333 (98.20%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE  ENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
            KNNKQKVTLPLFTFHEKLAKLRKKKKE ALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 LKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 331

[Close]

BLAST of Cmc10g0261721 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 1.1e-189
Identity = 328/333 (98.50%), Postives = 329/333 (98.80%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANL EPIN CIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
            KNNK+KVTLPLFTFHEKLAKLRKKKKE ALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 LKNNKKKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333

[Close]

BLAST of Cmc10g0261721 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 1.1e-163
Identity = 287/332 (86.45%), Postives = 306/332 (92.17%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREK+RVSTRTL+WKCVESRADSKRLYYGRFILSPLMKGQ DTIGIAMR+ALLGEIEGT
Sbjct: 1   MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGPGCVTAQD
Sbjct: 61  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILP SVEIVDNTQ+IANLTEPIN CI L+IERNRGYHI+TP NFQD SYP+DA+FMPVR
Sbjct: 121 IILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE  EN H
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE--ENLH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
            +NN+ KVTLP FTFH++LAKLRK KKE ALK IFIDQ ELPPR YNCLKR NIHTLFDL
Sbjct: 241 LENNQYKVTLPFFTFHDRLAKLRKTKKEIALKSIFIDQFELPPRTYNCLKRYNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNF 341
           LN S ++LMK+++FRIEDVK ILD LE+EK F
Sbjct: 301 LNKSQEDLMKMEYFRIEDVKQILDSLEIEKAF 330

[Close]

BLAST of Cmc10g0261721 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 1.5e-162
Identity = 286/335 (85.37%), Postives = 309/335 (92.24%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQ DTIGIAMR+ LLGEIEGT
Sbjct: 1   MVREKIRVSTRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITR KSEKIPHEYSTI+GI+ESVHEILMNLKEIVLRSNLYGTRDASIC KGPG VTAQD
Sbjct: 61  CITRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIAN+TEP+N CIELKIERNRGY I+T  NFQD SYP+DA FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE  +NF+
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEE--DNFN 240

Query: 249 FKNNKQKVTLPLFTFHEKLA--KLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLF 308
            +NN+ KVTLPLFTFH+ LA  KLRKKKKE ALK IFIDQ ELPPRIYNCLKR NIHTL 
Sbjct: 241 LENNQHKVTLPLFTFHDILAKEKLRKKKKEIALKSIFIDQLELPPRIYNCLKRSNIHTLL 300

Query: 309 DLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           +LLNNS ++L+KI+HFR+EDVK+ILD LE+EK+FA
Sbjct: 301 ELLNNSQEDLLKIEHFRVEDVKYILDFLEIEKHFA 333

[Close]

BLAST of Cmc10g0261721 vs. ExPASy Swiss-Prot
Match: Q9MTJ3 (DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=85636 GN=rpoA PE=3 SV=2)

HSP 1 Score: 559.3 bits (1440), Expect = 3.0e-158
Identity = 279/332 (84.04%), Postives = 298/332 (89.76%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREK+RVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQ DTIGIAMR+ALLGEIEGT
Sbjct: 1   MVREKVRVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT +ASICVKGPGCVTAQD
Sbjct: 61  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           I+LPPSVEI+DNTQHIA+L EPI+ CI L+IERNRGYHI++PNNFQD SYP+DA+FMPVR
Sbjct: 121 ILLPPSVEIIDNTQHIASLMEPIHLCIGLQIERNRGYHIKSPNNFQDGSYPIDAVFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           N NHSIHSY N NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEE  EN H
Sbjct: 181 NANHSIHSYGNQNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFLPFLHAEE--ENLH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
              NK  VT PLFTFH+KLAKLRK K E ALK IFIDQ ELPPRIYN LK   IHTL DL
Sbjct: 241 LGKNKYNVTFPLFTFHKKLAKLRKPKNEIALKSIFIDQLELPPRIYNSLKGSKIHTLSDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNF 341
           LN S ++LMK+KHFRIEDVK ILDILE+EK F
Sbjct: 301 LNKSQEDLMKMKHFRIEDVKQILDILEIEKAF 330

[Close]

BLAST of Cmc10g0261721 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 1.5e-157
Identity = 275/328 (83.84%), Postives = 298/328 (90.85%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           M +EK+ VSTR L+WKCVESRADSKRLYYGRF+L+PLM+GQ DTIGIAMR+ALLGEIEGT
Sbjct: 1   MGQEKVTVSTRPLQWKCVESRADSKRLYYGRFLLAPLMRGQADTIGIAMRRALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPG VTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANLTEPI  CIEL+IERNRGY I+TPNNFQ+ SYP+DA+FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           N NHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF HAEE     H
Sbjct: 181 NANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFFHAEE-----H 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
            +NN+ K TLPLF FH +LAK RK KKE ALKYI+IDQSELPPR+YNCLKR NI+T  +L
Sbjct: 241 LENNQHKGTLPLFNFHGRLAKPRKTKKEIALKYIYIDQSELPPRVYNCLKRSNINTFLEL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEM 337
           LNNS +ELMKI+ FRIEDVKHILD+LE+
Sbjct: 301 LNNSQEELMKIQDFRIEDVKHILDVLEI 323

[Close]

BLAST of Cmc10g0261721 vs. ExPASy TrEMBL
Match: A0A6M3W2R9 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo OX=3656 GN=rpoA PE=3 SV=1)

HSP 1 Score: 688.7 bits (1776), Expect = 1.2e-194
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0


Query: 1   MILSKNITMVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKA 60
           MILSKNITMVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKA
Sbjct: 1   MILSKNITMVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKA 60

Query: 61  LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKG 120
           LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKG
Sbjct: 61  LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKG 120

Query: 121 PGCVTAQDIILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPM 180
           PGCVTAQDIILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPM
Sbjct: 121 PGCVTAQDIILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPM 180

Query: 181 DAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHA 240
           DAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHA
Sbjct: 181 DAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHA 240

Query: 241 EEEKENFHFKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRC 300
           EEEKENFHFKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRC
Sbjct: 241 EEEKENFHFKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRC 300

Query: 301 NIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           NIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 NIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 341

[Close]

BLAST of Cmc10g0261721 vs. ExPASy TrEMBL
Match: A0A249RZB5 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoA PE=3 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.4e-190
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
           FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333

[Close]

BLAST of Cmc10g0261721 vs. ExPASy TrEMBL
Match: A0A249RXS6 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoA PE=3 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.4e-190
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
           FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333

[Close]

BLAST of Cmc10g0261721 vs. ExPASy TrEMBL
Match: A0A286NFR2 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoA PE=3 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.4e-190
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
           FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333

[Close]

BLAST of Cmc10g0261721 vs. ExPASy TrEMBL
Match: A0A249RYZ7 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. dudaim OX=2034236 GN=rpoA PE=3 SV=1)

HSP 1 Score: 675.2 bits (1741), Expect = 1.4e-190
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 308
           FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL
Sbjct: 241 FKNNKQKVTLPLFTFHEKLAKLRKKKKERALKYIFIDQSELPPRIYNCLKRCNIHTLFDL 300

Query: 309 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 342
           LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA
Sbjct: 301 LNNSPDELMKIKHFRIEDVKHILDILEMEKNFA 333

[Close]

BLAST of Cmc10g0261721 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 530.4 bits (1365), Expect = 1.1e-150
Identity = 259/329 (78.72%), Postives = 291/329 (88.45%), Query Frame = 0


Query: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68
           MVREK++VSTRTL+WKCVES+ DSKRLYYGRFILSPLMKGQ DTIGIAMR+ALLGEIEGT
Sbjct: 1   MVREKVKVSTRTLQWKCVESKRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128
           CITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPG +TA+D
Sbjct: 61  CITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120

Query: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188
           IILPP+VEI+DNTQHIA LTEPI+ CIELKIERNRGY ++  NNF+D SYP+DA+FMPV 
Sbjct: 121 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVE 180

Query: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFH 248
           N NHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE  E F+
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPFLHVEE--ETFY 240

Query: 249 FKNNKQKVTLPLFTFHEKLAKLRKKK--KERALKYIFIDQSELPPRIYNCLKRCNIHTLF 308
            +NN+ +VTLP F FH +L  LRKKK  KE A +YIFIDQ ELPPRIYNCLK+ NIHTL 
Sbjct: 241 LENNQHQVTLPFFPFHNRLVNLRKKKKTKELAFQYIFIDQLELPPRIYNCLKKSNIHTLL 300

Query: 309 DLLNNSPDELMKIKHFRIEDVKHILDILE 336
           DLLNNS ++L+KI+HF +EDVK ILDILE
Sbjct: 301 DLLNNSQEDLIKIEHFHVEDVKKILDILE 327

The following BLAST results are available for this feature:

BLAST of Cmc10g0261721 vs. NCBI nr


Match Name	E-value	Identity	Description
QJF46416.1	2.5e-194	100.00	RNA polymerase alpha subunit [Cucumis melo]	[more]
YP_004841815.1	2.9e-190	100.00	RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA poly...	[more]
YP_009346515.1	3.0e-187	98.80	RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alph...	[more]
YP_009004075.1	8.6e-187	98.50	RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha...	[more]
QHB75996.1	1.4e-184	98.20	RNA polymerase alpha subunit [Cucumis melo subsp. melo]	[more]

BLAST of Cmc10g0261721 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	1.1e-189	98.50	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
Q49KW6	1.1e-163	86.45	DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus...	[more]
Q2PMQ3	1.5e-162	85.37	DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV...	[more]
Q9MTJ3	3.0e-158	84.04	DNA-directed RNA polymerase subunit alpha OS=Oenothera elata subsp. hookeri OX=8...	[more]
Q09WY5	1.5e-157	83.84	DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3...	[more]

BLAST of Cmc10g0261721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3W2R9	1.2e-194	100.00	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo OX=3656 GN=rpoA PE=3 S...	[more]
A0A249RZB5	1.4e-190	100.00	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A249RXS6	1.4e-190	100.00	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. agrestis OX=217...	[more]
A0A286NFR2	1.4e-190	100.00	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. flexuosus OX=1120...	[more]
A0A249RYZ7	1.4e-190	100.00	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. dudaim OX=2034236...	[more]

BLAST of Cmc10g0261721 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	1.1e-150	78.72	RNA polymerase subunit alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 37..240 e-value: 1.4E-19 score: 81.1
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 43..233 e-value: 7.9E-12 score: 45.8
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 37..231 e-value: 1.5E-58 score: 199.4
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 21..239
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 67..184 e-value: 1.5E-58 score: 199.4
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 67..185
None	No IPR available	GENE3D	1.10.150.20		coord: 268..340 e-value: 8.8E-13 score: 49.8
None	No IPR available	CDD	cd06928	RNAP_alpha_NTD	coord: 28..237 e-value: 5.57429E-99 score: 289.369
None	No IPR available	SUPERFAMILY	47789	C-terminal domain of RNA polymerase alpha subunit	coord: 279..335
IPR011260	RNA polymerase, alpha subunit, C-terminal	PFAM	PF03118	RNA_pol_A_CTD	coord: 273..335 e-value: 3.1E-13 score: 49.3
IPR011773	DNA-directed RNA polymerase, alpha subunit	TIGRFAM	TIGR02027	TIGR02027	coord: 37..335 e-value: 1.9E-83 score: 278.0
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 15..339
IPR011773	DNA-directed RNA polymerase, alpha subunit	HAMAP	MF_00059	RNApol_bact_RpoA	coord: 14..341 score: 27.307795
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 74..166 e-value: 4.1E-15 score: 56.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0261721.1	Cmc10g0261721.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0000428	DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity