Cmc10g0260961 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc10g0260961
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	30S ribosomal protein S11, chloroplastic
Location	CMiso1.1chr10: 4671 .. 5099 (-)
RNA-Seq Expression	Cmc10g0260961
Synteny	Cmc10g0260961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCCCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGGATGCAACGAGCCGAAGTTATGATAAAGGGCCCCGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGGAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAACGACGTGTGTAAAAATAAACATTGA

mRNA sequence

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCCCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGGATGCAACGAGCCGAAGTTATGATAAAGGGCCCCGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGGAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAACGACGTGTGTAAAAATAAACATTGA

Coding sequence (CDS)

ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCCCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGGATGCAACGAGCCGAAGTTATGATAAAGGGCCCCGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGGAGAAGCGGTATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGCTGTAGGCCCCCTAAAAACGACGTGTGTAAAAATAAACATTGA

Protein sequence

MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKNDVCKNKH

Homology

[Close]

BLAST of Cmc10g0260961 vs. NCBI nr
Match: TYJ33267.1 (hypothetical protein E1A91_A05G091500v1 [Gossypium mustelinum])

HSP 1 Score: 271.6 bits (693), Expect = 4.0e-69
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRNSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPF AQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFTAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK DVC+NKH
Sbjct: 121 DVTPMPHNGCRPPKKDVCRNKH 142

[Close]

BLAST of Cmc10g0260961 vs. NCBI nr
Match: TYH01481.1 (hypothetical protein ES288_A09G062000v1 [Gossypium darwinii])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 133/142 (93.66%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPK VIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRSSARKSARRIPKEVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+R
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK DVC+NKH
Sbjct: 121 DVTPMPHNGCRPPKKDVCRNKH 142

[Close]

BLAST of Cmc10g0260961 vs. NCBI nr
Match: KAB2080791.1 (hypothetical protein ES319_A05G090000v1 [Gossypium barbadense])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRNSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPF AQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR IRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFTAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRVIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK DVC+NKH
Sbjct: 121 DVTPMPHNGCRPPKKDVCRNKH 142

[Close]

BLAST of Cmc10g0260961 vs. NCBI nr
Match: KAG4198446.1 (hypothetical protein ERO13_A05G086300v2 [Gossypium hirsutum])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRNSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPF AQTA GNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFTAQTAVGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK DVC+NKH
Sbjct: 121 DVTPMPHNGCRPPKKDVCRNKH 142

[Close]

BLAST of Cmc10g0260961 vs. NCBI nr
Match: CAB4320166.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 266.2 bits (679), Expect = 1.7e-67
Identity = 132/142 (92.96%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP+IGSRRN RI SRK+ RR+PKGVIHVQASFNNTIVTVTDVRGRVISWSSAG CG
Sbjct: 1   MAKPIPKIGSRRNRRIGSRKNARRVPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGACG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK  VCKNKH
Sbjct: 121 DVTPMPHNGCRPPKKGVCKNKH 142

[Close]

BLAST of Cmc10g0260961 vs. ExPASy Swiss-Prot
Match: Q4VZK2 (30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-69
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPK 135
           DVTPMPHNGCRPPK
Sbjct: 121 DVTPMPHNGCRPPK 134

[Close]

BLAST of Cmc10g0260961 vs. ExPASy Swiss-Prot
Match: Q0ZIY6 (30S ribosomal protein S11, chloroplastic OS=Vitis vinifera OX=29760 GN=rps11 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-68
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIPRIGSRRNGRI SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCG
Sbjct: 1   MAKPIPRIGSRRNGRIGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           F+GTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+R
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DVTPMPHNGCRPPK 135
           DVTPMPHNGCRPPK
Sbjct: 121 DVTPMPHNGCRPPK 134

[Close]

BLAST of Cmc10g0260961 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.8e-68
Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRSSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+R
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DVTPMPHNGCRPPK 135
           DVTPMPHNGCRPPK
Sbjct: 121 DVTPMPHNGCRPPK 134

[Close]

BLAST of Cmc10g0260961 vs. ExPASy Swiss-Prot
Match: Q2L937 (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.8e-68
Identity = 128/134 (95.52%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRSSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+R
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DVTPMPHNGCRPPK 135
           DVTPMPHNGCRPPK
Sbjct: 121 DVTPMPHNGCRPPK 134

[Close]

BLAST of Cmc10g0260961 vs. ExPASy Swiss-Prot
Match: Q0G9S9 (30S ribosomal protein S11, chloroplastic OS=Daucus carota OX=4039 GN=rps11 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.6e-67
Identity = 126/134 (94.03%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAK IPRIGSR+NGRI SRK+TRRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCG
Sbjct: 1   MAKTIPRIGSRKNGRIGSRKNTRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+F+R
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVR 120

Query: 121 DVTPMPHNGCRPPK 135
           DVTPMPHNGCRPPK
Sbjct: 121 DVTPMPHNGCRPPK 134

[Close]

BLAST of Cmc10g0260961 vs. ExPASy TrEMBL
Match: A0A5D2Z358 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G091500v1 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.9e-69
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRNSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPF AQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFTAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK DVC+NKH
Sbjct: 121 DVTPMPHNGCRPPKKDVCRNKH 142

[Close]

BLAST of Cmc10g0260961 vs. ExPASy TrEMBL
Match: A0A5J5VKX9 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G090000v1 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.6e-69
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRNSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPF AQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALR IRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFTAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRVIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK DVC+NKH
Sbjct: 121 DVTPMPHNGCRPPKKDVCRNKH 142

[Close]

BLAST of Cmc10g0260961 vs. ExPASy TrEMBL
Match: A0A5D2F6Q5 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G062000v1 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.6e-69
Identity = 133/142 (93.66%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP++GSRRNGR S+RKS RRIPK VIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPKVGSRRNGRSSARKSARRIPKEVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+R
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK DVC+NKH
Sbjct: 121 DVTPMPHNGCRPPKKDVCRNKH 142

[Close]

BLAST of Cmc10g0260961 vs. ExPASy TrEMBL
Match: A0A6J5Y1X8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS48738 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.1e-68
Identity = 132/142 (92.96%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIP+IGSRRN RI SRK+ RR+PKGVIHVQASFNNTIVTVTDVRGRVISWSSAG CG
Sbjct: 1   MAKPIPKIGSRRNRRIGSRKNARRVPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGACG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPKNDVCKNKH 143
           DVTPMPHNGCRPPK  VCKNKH
Sbjct: 121 DVTPMPHNGCRPPKKGVCKNKH 142

[Close]

BLAST of Cmc10g0260961 vs. ExPASy TrEMBL
Match: A0A410HFC3 (30S ribosomal protein S11, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps11 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DVTPMPHNGCRPPK 135
           DVTPMPHNGCRPPK
Sbjct: 121 DVTPMPHNGCRPPK 134

[Close]

BLAST of Cmc10g0260961 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 246.1 bits (627), Expect = 1.7e-65
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
           MAKPI RIGSR+N R  SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG
Sbjct: 1   MAKPILRIGSRKNTRSGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
           F+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGRDAALRAIRRSGILLSF+R
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DVTPMPHNGCRPPK 135
           DVTPMPHNGCRPPK
Sbjct: 121 DVTPMPHNGCRPPK 134

[Close]

BLAST of Cmc10g0260961 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+HV ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR 132
           G+    V +        K PG G  +ALRA+ RSG+ +  I DVTP+P +  R
Sbjct: 88  GITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTR 140

[Close]

BLAST of Cmc10g0260961 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR 132
           G+    V +        K PG G  +ALRA+ RSG+ +  I DVTP+P +  R
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTR 140

[Close]

BLAST of Cmc10g0260961 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQ 87
           GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCR 132
           G+    V +        K PG G  +ALRA+ RSG+ +  I DVTP+P +  R
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTR 140

[Close]

BLAST of Cmc10g0260961 vs. TAIR 10
Match: AT1G31817.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06
Identity = 37/116 (31.90%), Postives = 53/116 (45.69%), Query Frame = 0


Query: 29  VIHVQASFNNTIVTVTDVRGRVISWSSAGTC-GFKGTRRGTPFAAQTAAGNAIRAVVDQG 88
           +IH++   NNT VTVTD +G V   +++G+    KG R+ T + A   A N  R     G
Sbjct: 195 IIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMG 254

Query: 89  MQRAEVMIKG-PGLGRDAALRAIRRSGILLS--------FIRDVTPMPHNGCRPPK 135
           ++   V + G    G+        R G   S        +I D T   HNGCR P+
Sbjct: 255 LKSVVVKVNGFTHFGKKKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPR 310

The following BLAST results are available for this feature:

BLAST of Cmc10g0260961 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ33267.1	4.0e-69	94.37	hypothetical protein E1A91_A05G091500v1 [Gossypium mustelinum]	[more]
TYH01481.1	1.2e-68	93.66	hypothetical protein ES288_A09G062000v1 [Gossypium darwinii]	[more]
KAB2080791.1	1.2e-68	93.66	hypothetical protein ES319_A05G090000v1 [Gossypium barbadense]	[more]
KAG4198446.1	1.2e-68	93.66	hypothetical protein ERO13_A05G086300v2 [Gossypium hirsutum]	[more]
CAB4320166.1	1.7e-67	92.96	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Cmc10g0260961 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK2	1.4e-69	99.25	30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=...	[more]
Q0ZIY6	6.0e-68	95.52	30S ribosomal protein S11, chloroplastic OS=Vitis vinifera OX=29760 GN=rps11 PE=...	[more]
A0ZZ68	7.8e-68	95.52	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
Q2L937	7.8e-68	95.52	30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 ...	[more]
Q0G9S9	6.6e-67	94.03	30S ribosomal protein S11, chloroplastic OS=Daucus carota OX=4039 GN=rps11 PE=3 ...	[more]

BLAST of Cmc10g0260961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2Z358	1.9e-69	94.37	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G091500v1 P...	[more]
A0A5J5VKX9	5.6e-69	93.66	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G090000v1 PE...	[more]
A0A5D2F6Q5	5.6e-69	93.66	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G062000v1 PE=...	[more]
A0A6J5Y1X8	8.1e-68	92.96	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS48738 PE=...	[more]
A0A410HFC3	1.8e-67	100.00	30S ribosomal protein S11, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]

BLAST of Cmc10g0260961 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	1.7e-65	92.54	ribosomal protein S11	[more]
AT3G52580.1	1.2e-10	37.17	Ribosomal protein S11 family protein	[more]
AT2G36160.1	1.5e-10	36.28	Ribosomal protein S11 family protein	[more]
AT3G11510.1	1.5e-10	36.28	Ribosomal protein S11 family protein	[more]
AT1G31817.1	1.3e-06	31.90	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019981	Ribosomal protein S11, bacterial-type	TIGRFAM	TIGR03632	TIGR03632	coord: 19..134 e-value: 1.3E-49 score: 165.5
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 28..135 e-value: 7.0E-50 score: 168.0
IPR001971	Ribosomal protein S11	PIRSF	PIRSF002131	RPS11p_RPS11a_RPS14e_RPS11o	coord: 8..140 e-value: 9.3E-46 score: 153.0
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 1..135
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 11..138 score: 30.709667
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 10..136 e-value: 1.3E-45 score: 156.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR11759:SF49	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	coord: 1..135
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 24..134
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 106..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc10g0260961.1	Cmc10g0260961.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome