Cmc09g0260861 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0260861
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	serine/arginine-rich splicing factor SR34A
Location	CMiso1.1chr09: 23921043 .. 23931974 (-)
RNA-Seq Expression	Cmc09g0260861
Synteny	Cmc09g0260861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTGTGGCTGTGGTATATTATCTTCTGTTGCGACCTAACCCTAAGCCCTTCGTCATCACGTCCGGTCGCTGCGAAGAAAGCCGAGAAGGATCCCCAGGTCATCAACTCTTCTTTCAGCCCTTGCCGAGCCGCAGAGCCGTCACTGTCGCTTTTCACTTTCTCGGTGCAGTTTACTTCGTCAGTTTCTCACTCTTTGGTATGTTGCTCTCGTTAGGCGTTGCTTATACTTGTATCTATTCACCGTGTCAGTGTGATAATAAAATTAGCTTCATATTCCTGATGAGGAATTTTATTACTCAGACTGCTCGTTTTCGAGTGTTTCATGGTGGGTCGGACGTTGGAAATATTGGATTTAAATTTTGCTGTCAGCTCCCTCGTTTTCTGGAATAGGGTGGGGCATTTTGTTGGTTTAAGGTGAAATGCATTTGCCGATAACAACATTCCTCAACTTTTTGCTTCCTCCAACTATTTATTTATTTATTTCATTCCACTTTCTTGTACCTTGGAAATCTTAAATTTGTATTCGATTGTTATCTTCGTACTTGGGCTGTAAGAGCCAGCACTAGAAGGAATCAACAACTTGGTACCATGCCAACGTTTGAGTTTTATTTTCTTAATTATGCTTTTGTGCATCCCGTGTACCGAATTGGCCCAAAGAATTTCTTCAATTTATGTCCTATTAGTTGGGATTTATGGACTAAAGATCGTGACTTAGAGATCCACCTTCTTGAATTTTGTTTCCATTTTCTTAATTGATAGTGCATTGTTGTATTTCTGTATCAAAAATTTTATGTAGTTTTTCCACTGACGACTTGGATAAGCTGGACCAAGAGTATTAGCTACTTATAATATAACACCAATGTTTTGTATGACAATGTCCTTAAATATGTTGATATGAATAGAAGAAAACATTTGCTCCATTCCTCTTTGGAATCAAATGCAACATAATTGAGGATTTCACCGATCATCTAAAGTTAATCAACAGAGGACATCCTACATATTTTTTCAGGATTGTTTTCTCAATGCTGTTAAGAGAGCTGAGTAAGGTAAACTTAATCATGTATGTCACTTACCTCATCTCATGACACAGATGCTTTCTTTATGATAGATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAAAATTGACGATGCCGATGGCAGTTGGTTACGGTGGAAGATGGTGTTTCTTTCCTTTTGATGATTTGTTAAACAGATGCATGATGTTATGACATATGTGTGCAGGAATAATATTCAAACTTCCTTGGAGTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCTTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGGTAGATGTCCTTGGTCTTAGCTAATTCTTTTCACCGTGTCTGTGCAAATTGTTATTTTCTCTGTTCATATTTTAAATGTGAAAGCTCCTTACATTGGTGATCTACAGTAGTTCAAATTTATTTTAGTTTAGGTCTGAAAAAATATACTACATGTATTTCCTGGCTTCAGCAGATTTAAGGTTTAATTTGTTTGAACTTACAATTTTGTGTCTACATGATCGATATTTTCTTGGCAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGGTATCGTTTTCTTATCTTAGTTTTTACCTACTTTTAGCTGTATCGTCAAAGTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAACTTTGATGGTTGTCGTCTAAGGGTACCAACTAAGTTTTCTCTTGCCTTCATTTCCTGATTCCTGTTATTTTTGTTATATTCATATTTTCAGTTTTTCAAATAGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGAGAATATGTTCAGTGCTGCTATAAGGAACCACGATGCTGGAAAATTTTCCCATGCATGGTATTTCATTAGGTCCATATTAATTCAATGCGCTAATGGATGTTTAATTTTTCTCACAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGTGTTAAAATCTTTATTGTTCAATGAAAGATCAAGGTTTTCTTTTATTGGATTATGTTGATATGATGGCTTTACTGGAATAATGCTTTCAGGATCATATGCGTAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGTTAACTACACCTTCTTCACCCCATAAAAAACTGCTATTGTTTTTTTTTAGTTTGTGCCCAACAGTTTTGCCGTGTAGGAATGATTTCTCAAGCAGATGTTACCTATTTGTCTTGTTTTACAAATTCAACTCATGTGATAACTGATATGAGTTGGAATGTAAGCTTGTGCATCATCCATAATTCTTACTGCACATATTTAATTAAGCATATGTTCCTTGCCTAGCTTCAGAACATAATGTGATGGAGGGGTCTTTATAGTTGTTTTTATCTCTAAAAAGTGGTTTACTTTCTATTTGGGGTCTATGAATGAAGCTTATGAAAGTATGGCATATCTCTGTTAGAGAAATGCAAGGCATTTGGATAGCTGAACTTTTCTTGAAAGTTCCCCTTGTGTTTCCACCAAAAGTGGAGGCTAACCGCAAAAAGGGCCTCTAATCCAGATTCCCAGAAAAATAAGTTCTAATGGGTAGTTACAAAAAGGTTTTCCCACCTAAGCTCACAAAGAAACATGAATGTGACAAGAGATCAAAGATTGGTTTAAGAGTGCCCTAGCCCTTTAAAAATTCTATTGTTCCTCTTCCTAAAGACTCCAAAAAGTAGCACTTTGGCTTGCCACAAAAAATTTCTTTCTTGCAGAAGGGGATGGACAAGGTATTCCTTGATCATTCCCTGTAGCCCTTGTCTAACCTAGTGAACGTCAAACTGCTCAAAAATTGGATTCAAAACTACATAAGCTATATAGCACAAATCCAATGAATTTGATAATTGATTGCTGGTTGAAATTCTGAAAATTGTCCTAGGATGGATTTATTACAATTTCTTGCATCCTTGAATTTTCTTGGTTGGTTCTTGGTTGATTGTTGGCCATCTTTTTCACTTCCAATGTTAACTTCTCAATAGCTTGTTGGAGCATGACCATTGGGGTTTGCCCCATAAACCAGCCACTAAAGTTTTTAAATTGCCAATCTGCTGATTCAAGGTCTGAGAGGAAGTAGAGAGGGATGCTTCTGCGTCATGAGATTGGATTTCAGGAAGATTGTTGGTGTTCTTGATCATCAATTTACCATCAGGCCTGTTCATGAAGGCTCTGATATCAATTTGATGTAGATTAAGAGTTTTGGAGAATTCTTGAAGGAAATGTATTATTCATTTTGTTCGGAAGACTCTTATTTGTAGAGTTGATACACGTTAGTCTGGGGTAAGGGGGTTAACTATACTATTTAACCCTATTGTCCAGTTAACCCTATTCTTCTTACACCAATTTTCACCTTCTTCATCGAGGTAAAGTTAGAGACCAGAGCGAGAAAGGTTTGACCAAATAGAGAAAAAATGATTGACATGAAAACTTGACAAACGTGGAATCTAAATTTGAACACCCCTTCTTTTTAGGGTACAACAAAACTCCCCAAGCAAATGAAAAAGATCGAAAATATATTTGTTTCCTTTCAGACAAAAGACAACAGCCGTTTGGCTGACTTTTTGTGAGCTTATTTCTGGATGTTATGAGCCGAGAGCAATAATCGTTTTTTTATACCCTTCTTGTTTTGATCATTTTATGGATTTTGTTCTTTCTACTGCTTTGTATTGGTGCAAATCAAAGCATCCTTTTAAGCACTTGAAATTTTCTTATTTAGTTTCCATTCCAATTGGATTATTTTCTTTTCTTTTCTTGTATTTTTGCAATGATCTTTAAGTGCTTGCGGTCTCCTCATTATTTCATTTATTCAATCTGTTTCTTTGCTTAAGAAAAAAAAAAAAGACAAAAGATGGCTAGAAACCCACAAGAGGGGTAGGAGAGGTCGTAGGATGAAACGGAATGGTAAGCAACTGAGTGATACCACATCCAAAAAAATGGGCCTTGTTAGTTTCCATGTTTTGTTTTTGGCTTGGGTTTCAAAGGTGTTTTTGTAATTATTCCCTAGGCAATGTTTTATTTAGTTGGGAGCCCTTCCTTTAGTGAGGTGGTTTTGTTTTTTGGATACCCATGTGTTCTTTTATATTTTATTTTTTTCTGAATGAGAGCTGTTTTTTTCAAAAGAAAAAAAGAAAAAAAGAAAAAAGAAAAAAGGAAAAGTTGCACAAACCACTCCTAAACTATGGGGTTGGTTACTATCACGTATTAATTTTTAATTTACTCAATTTGTACCCTTATAGTTTTTAAATGATTGGAATCAACCCCTCTTTAAATAACGTTATTTATTAATTTACCTCGCACAAGAGTGTATAGGCAAATTTGTAATAAAAAATAAACTTGGGAGAGAGTACAGAAGAAGAAGGAAGATGAAGAACACCACTTTCATCCTCAAAGATGAAAAACGACACTTTCAACCACAAATCCTTCAAAATCCCATAGTTCAGTACAAAGATTCCAACCGAAAAAACTTACTAAAATATCTTGAATATGCTTTGAAAAATGTTAAAAATCAATTTAACATAAGTTACACCAAAACTTAATGGGTATTCAAGAACTTAAAATAAAAACCCAAAAGCTTGCCCAAAATTAAGATTTTGAAAATGATGATGCTGGCAATAGCGATCTCAAGGTATGGCGGCAAAGGTGTCAGAAGATTGCGTGGTGGTAGCTGGAATTGACATCCAGAATCGGTTGGAGAGAGCAAAAAACTCCCCAAAAGAAAACATCTCACCGACGGTCCACGACAGTGGATTGCGGCGCGACTAGGGTGGAGGCAACGGTCGAGGGAGGTGGCAGGGACAGAGGTGGCGAGTTTTGAGGTGTTCCTTATCGAAGGAAGAGGGGGAGATGCTGCAAGTGTGCTTCTTCAACTTCTCCAAGTTTCATTTTTTATTACAAATTTACCCCTCCCTCTCTTCATGTGTGAGTTGAATTAATTAACAATATTTAATTTAAAAAGGGATTGATTGCTTCCATTTAAAAATTATAAGGGTACAAATTGAGCAAATTGAAAATTAATGGGTGTGATTGTAACCAACTCCATAGTAAGGGATGGTTTGTGCAATTTTCCAAAAAAGAAAAAAACTCCCATCCCCTTTGAAACAATGGACTAAAAGAGAAAAGGAAGCTTTTGTAGCAATACCTTCCCAAGGATTTAATTTTGTATATCGTAGGAATTGGGGGTTCACTACTGGTTGACTTTAAGGCCCAACTTTTTCTAGTCGGCACACAATAGATGTGTGGATTGGATGAATCATGTGTTGATATGTCCAACTTTCCTGGGGAGGAGAGGTCTTAGGCTTGTTTTATGTTATTGATGTCTTGATCCCTCTAGTGGTGTCCCAACTAAGTTTACTTTTTTTCTAATTAAACAGAAACAAACATTTCGTTAATATAATGAAAAGAGCTATTGCTCAAAGTACAATGAAAGAAAAAGCATAAAAGCCACTAAGGCTAGAACTAGGAATCCAGAGGGATACACAGGCATCTCAACTAAGTCTACCACCTTCTTAAGTGTAACTAAGGGGGCCTTGAAGAAATCTTTTCCTAGGTTGGTTCTGTTGCTTTCGAGCTTAAATACTCACGATAAGCTCCAGACCATTTTTTTACTCATTGTAATTTTTCTATCAGAGGTTGGTCCAACTTATTCAATATTTTTGGGGGTGAGCTATATGCCTAAGAAGGTTGTGATTGGCTGCTTGAAGGGCTTTTATTGGTTATGGTTCACTAGCAGTGATAAAATCTAGTGGGGATGTGGTACTCACTACCTTCTCTTGTGTCTGTGGAGAGAAGAAAATAGTTTGTTAGTCGAAGATGAGTATTTTTTTTTATTAATTATTTTTGGGCTTTTTTTAGCTTACATCTTGATGGTGCACAAATTACACCATTTTGTAATTACAGCCTTTCGATGGTTCAATTGAAAGGTGGTCCTCCATTAGCTCCTTCGGAAGGAGTCTTGTCAATTCCCTGCCCTTAGGTTACTTCTTTCCGTTCAATTTGAATATATACCATTTTCTTCCGAAAAAAAACCACAACACATTCTCTTGCAACTTCATATCATCTTTATATTTTGTTGTATGATGTTGGTATTTTGGTGTTAACATTGTGTTATGTTGGCTTTTTTGATATTTGAAGAGGCAGTCTTTTTTATTAGTTTATAATCCAGGGGTGTATTATGAATAAAATTTACTTTTATAATGTTTCTCTGACACATGTCATAACACATGAAATTCATTTACACTAACAACTAGGAGTTGTCGATTTTATTCTCTTTTTAAAAATTCCATCAAGCTTAGAAACTGAAATTACTTTGAATTGAATTGGTAATTAGATAAATATTTACTATTTGTAGTCAACATGTCCAGGGACGTTTGGGATCGTTGATTATACTAACTACGATGACATGAAATATGCTGTAAGTTTTTCTAAAAGCACATTTTGTCAGAAGTTCTGCATTATTTTATTTTGACAATTGATGTTTTTCTATTATTTAGATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTACCTTAACCTTTATTCGCTTGCCATTTTGGTTAGTTCGAAATAGCCTAATGTTGTGATATTTTTCATTATCAGCACAACCTCTTTCTTGAGCTCTACAAGAAACTGGATTCAGTTGTCTGTGCCCCTTGTTTGTGGATGACATATCATATATGGTTGCAGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCCGGAGCAGAAGCCGTAGCCGAAGCCGGACTGCTAGACGAAATAGGAGGTTCCATGCTTTTACTGTTGTCTTTATTGCCCTCATGGCCTCTTTTGCGTTGTTGTAACATTTTTTTGTATGCTGCAGCAAATCAGCAGAACGACGATCTGTCTCTAGATCAGTTTCAAGATCGAGATCTCCATCTCCTGTTAAATCTTCAAGGTACTTCGGCCTGTGCGTGCTTTTTCTCATTAGTTTAGATTTGCTTGACAAACAATTTTCTGCAAAAATATGCAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGTATGCAACTTCTGGTTTTAATGCTTCAAAAACTGTAAACTTTATAGCATCTATTTACGTTCATGGTAAATAACATTATCTGATTGCATGACCTGCGAAAATTGGTAGTGATGTTTAAAAAGAACCTCTGGAGAAGAGGGTGTTTTTTTATGGGGGAGGGAATGGGTACGATGATTATCATGTGGTCACCATTTTGTTTTTGGTAGCATGAGTGTCTTGTTGCCAATGGAAGTGATCAGAAGCTGAGAAGCATGGATATGTATTCGATAATTATGACATGCCATTTTTAGAAATCTAGGACAAAACATGACATGGAATCATTCATTAAAACGTACCCTTATTGGAAACACATAATATTTTTATACAAGAAAGACATTTAAAGACGATTGGTTTATGGATTTATATGCTTAAAAAACTAGTTTGTTGTATTTTGGATTCAAATTTTACTTTTATCATATATGTCTAATTAGTACATGCAATAAGCATGTTGATTGTTTATAGGCTTAACAATTGGAATATTGTTAAGGGGGATTTGGAAGTTGCGTTTAAAGAGTTTTTCAAAAGAGGTATCTTAAATCGATCCCTGGTTGAGACTTATGTGTGTATAATCCTGAAGAAGGAAAATGCCAATAGAGTCGAGGATTTTAGGCCTTTTAGTCTGATCACCAGTATTTATAAGATTTTGGCAAAGGTCCTTGCCAATCGGTTAAGGAAAGTGATGCCTTCTACAATTTTCAAGGTGCAAGGAGCTTTTTTAGCGGGTAGACAGATCTTAGATCAAGTCCTGATAGCCAATGAGGCAATTGAGGATGTTCGTCAGAGGAAAAAGGAGGGAGTCGTACTTCAGCTTGATTTTGAAAAGACCTATGATCATGTTGATTGGGATTTTTTGGTAAGGTGATGATGAAGAAAAGGCTTTGGCTTTAGATGGAGGATGTGTTAGGAATGTTCAGTAATCTATCCTTGTCAATGGAACTCCTAAAGGTTCGATCTAAGCCTCTAGAATGTGCAGTACTCAATCCAAGCCTCTTGATGTCCTAAGTCATCTCATTCTTAAGGGAGTAGATGGAAACATTATTGAGCCCCTTAGGATTGGCTCAAATGAGGTGGCTTATCGTATCTCTCGTTTGCTGATGACACTATCCTGTTTTGTTAGAGTAAAGAGGAGTATTTTATGATCTTAAATCATATGGTGGAGTTTTTTGAGGATATGTCTGGTCTTGAAATCAATAGGAGTAAATGTCAAAATCTAGGGATTAACTGTGACCAAAGGAAGGTTGGAAGAAGGGCGGACTTGTTTGGATGTGAGATTGGATTTTCTCCCTCTTTCTACCTTGATTTCCCTTTGGGTGGTAATTCGAAAGTTACATCGTCTTTGGGTGGTAATTCGAAGATTCGGGAAAGGCTCTTCCCAATTGGAAGAAAAGTTTCTTTTCCTAGGCAGGCTAGTTAACTTTGATTAGATCGGTTCTTAGTGGCATCTCAATTCATTACTTTCCCCTTTTTCGTGTCCCTAGTTCAGTTTGTAAGTGTCTTGAAAAATCCATGAGGACTTTCTTTGGGAGCGGGTGGAGGAGGGGAAGGGCTTTCATTTGGTCAATTGGTAGATGGTTGGGAGACCTATTAGTAAGGGAGAGTTGGAGATTGGCAATTTAAGGTCTCACAACAGAGCTATCTTGAACCCAAAGCCTGGTGGTTGGGAGACTTGTTATTGTGTGCAAGCATGACAATTGCATGACAATCGCCCTTATGATATCTCGTTTGAACCCAAAGCCTGGGGTTAAATGCTCAGATCGGAATCCTTAGAAAGATATCTCGTTTGAACTTTCTACCTTTTCTGATTTTGTGAAGTGTGGGATTGGAAAGGACATTTTTTTGGGAGGATCAGTGGGTGGGGGAGGGCACTCTTTCTTCTGTCTTTCCTCGTATTTATCACCTTTCTTCCCTTCAAAATTGCTCGATTTCTGGCTTCTCGATTTGGTCTGTGTCCTTTTTCGTTTGGGTTTTATCGTAATCTGTCCAATCCAATAGGAGAACAATGGAGGTTGCCTTTCTGCTTTCTTCACTGGAGAGGGGTGCTCTTTTAGGAAAGAGAGAAGGGTGTTCATCTTTGGTGTCCAAATCCTAGGAAGGGGTTTTCTTGTCAATCCTTCTTCAGATTGCTTTTAGATCCCTTTCTCATTGGGAAGTCTGTTTTTGATACCATTTGAAGGATTAAGATTCCTAAGAAAGGTTTTTTATCCGGCAAGTATTGCTTGGTCGTGTTAACACTTTTGATAGACTTGCTAGAAGGAAAACTTCACTTATGGGGCCTTTCTATTGCATTTTGTGTGGTAAGGCGGAGGAAGATCTGAATCATCTCTTGTGGGGCTGCCAGTATGTGAGATCTGTATGAAGCTTATCCTTGCAGAAGTTCGATGTCAGCATTGCTGGTTAGAGAGATGTGCGTGCGATGATTGAGGAGTTCCTCTTCCATTCACCTTTAAAAAAGGACGCTTTTTATGCTTGCTGGGGTGTGTGCACTAATGTGGGATACTTGGGCGAAGAGAAATGGTAAAGTTTTTATAGGGAATGATAGACTTTAGTGAGATTTCATGTGTCCCTTTTGGCTTAAGATTGAGAGCCTTTTTGTAACTATTTGCTAGTAAACATTAATTTTAGTTGGATCCTGCTCCTTTGGTGGGACTTTTTTTTTATTGAGCTTTTTTTATATGCTCTTGTATTCTTTCATTTCTTTTTTCGATGAAAGTTGTTTCTATGAAAAAAAATCTAATACATTTTGGTCTTATTTTGACTTTGTACAACTAATGTCTAAACACATCTATTGCACTAAATGCTTTGAATAAGTAAAATTGATGGAAATTTCTTTTTCAGGCACGAGAAGAAAGCGGGTGATGCAAAGCTATTATTATATGCGTGGTTGTTATAATATTCAGGATGTGACATTGCCTTGGAATTCATTTTAGTTTAGGACCTATGCAGTGCAGACTGGTTATATGAGGGGTTGAGTTAGATGGAAAATGGCATGAGTTGTATGGATTTTCTTTTGAATGCTTCCTACACTTTGTTTGGAGACATTTTTAGGTATCTGCATTCTCAAGATACTTGCAGACTGGTTTCCCTGCTGATAACTACTCAGATTTTGTTTGAAAGTTGAAAATGAAATTGTTATTAAATGGGATTTTAGACCTTGTAATTATAAATTTTAGACCTTGGATATTCTTCTCTTTTTGTTTCTTTTCTTCTTCCCTTCTGTTGTCAGCATG

mRNA sequence

GTCTGTGGCTGTGGTATATTATCTTCTGTTGCGACCTAACCCTAAGCCCTTCGTCATCACGTCCGGTCGCTGCGAAGAAAGCCGAGAAGGATCCCCAGGTCATCAACTCTTCTTTCAGCCCTTGCCGAGCCGCAGAGCCGTCACTGTCGCTTTTCACTTTCTCGGTGCAGTTTACTTCGTCAGTTTCTCACTCTTTGACTGCTCGTTTTCGAGTGTTTCATGGTGGGTCGGACGTTGGAAATATTGGATTTAAATTTTGCTGTCAGCTCCCTCGTTTTCTGGAATAGGGTGGGGCATTTTGTTGGTTTAAGATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAAAATTGACGATGCCGATGGCAGTTGGTTACGGTGGAAGATGGTGTTTCTTTCCTTTTGATGATTTGTTAAACAGATGCATGATGTTATGACATATGTGTGCAGGAATAATATTCAAACTTCCTTGGAGTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCTTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAACTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGTAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGGACGTTTGGGATCGTTGATTATACTAACTACGATGACATGAAATATGCTATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCCGGAGCAGAAGCCGTAGCCGAAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCAGAACGACGATCTGTCTCTAGATCAGTTTCAAGATCGAGATCTCCATCTCCTGTTAAATCTTCAAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGCACGAGAAGAAAGCGGGTGATGCAAAGCTATTATTATATGCGTGGTTGTTATAATATTCAGGATGTGACATTGCCTTGGAATTCATTTTAGTTTAGGACCTATGCAGTGCAGACTGGTTATATGAGGGGTTGAGTTAGATGGAAAATGGCATGAGTTGTATGGATTTTCTTTTGAATGCTTCCTACACTTTGTTTGGAGACATTTTTAGGTATCTGCATTCTCAAGATACTTGCAGACTGGTTTCCCTGCTGATAACTACTCAGATTTTGTTTGAAAGTTGAAAATGAAATTGTTATTAAATGGGATTTTAGACCTTGTAATTATAAATTTTAGACCTTGGATATTCTTCTCTTTTTGTTTCTTTTCTTCTTCCCTTCTGTTGTCAGCATG

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCTTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAACTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGTAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGGACGTTTGGGATCGTTGATTATACTAACTACGATGACATGAAATATGCTATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCCGGAGCAGAAGCCGTAGCCGAAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCAGAACGACGATCTGTCTCTAGATCAGTTTCAAGATCGAGATCTCCATCTCCTGTTAAATCTTCAAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGCACGAGAAGAAAGCGGGTGA

Protein sequence

MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREESG

Homology

[Close]

BLAST of Cmc09g0260861 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 474.2 bits (1219), Expect = 8.0e-130
Identity = 267/279 (95.70%), Postives = 272/279 (97.49%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY   GGGGGGGGGGGGGGGGGGGGRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---GGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRTARRNRSKSA 240
           AIRKLDDTEF+NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS+SRSR+ARRNRSKS 
Sbjct: 181 AIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSQSRSRSARRNRSKSV 240

Query: 241 ERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREES 280
           E RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPR+ RE S
Sbjct: 241 E-RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGREGS 275

[Close]

BLAST of Cmc09g0260861 vs. NCBI nr
Match: XP_038907230.1 (serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907232.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907233.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida])

HSP 1 Score: 461.8 bits (1187), Expect = 4.1e-126
Identity = 263/289 (91.00%), Postives = 266/289 (92.04%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY         GGGG GGGGG GGGRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---------GGGGSGGGGGAGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRT--------- 240
           A+RKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSR+         
Sbjct: 181 AMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSR 240

Query: 241 -ARRNRSKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREES 280
            ARRNRSKSAE RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQARE S
Sbjct: 241 PARRNRSKSAE-RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREGS 279

[Close]

BLAST of Cmc09g0260861 vs. NCBI nr
Match: XP_011654574.2 (serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654577.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654579.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654580.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654581.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741184.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741186.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >KAE8647793.1 hypothetical protein Csa_000628 [Cucumis sativus])

HSP 1 Score: 448.0 bits (1151), Expect = 6.1e-122
Identity = 267/302 (88.41%), Postives = 268/302 (88.74%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG---------------GGGG 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG                   
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120

Query: 121 GGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG
Sbjct: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPT--------RSRSRSRS 240
           TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPT        RSRSRSRS
Sbjct: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQARE 280
           RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSP+KSSRPRSKSRSGSPRQARE
Sbjct: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 300

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BLAST of Cmc09g0260861 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 442.6 bits (1137), Expect = 2.6e-120
Identity = 251/282 (89.01%), Postives = 260/282 (92.20%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y          GG GGGGGGGGGGRF
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY----------GGSGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSRSRSRTARRNRSK 240
           AIRKLDDTEF+NPWARAYIRVKKY+GSPT  RSR+RSRSRSRSRSRSRSRSR+ARRNRSK
Sbjct: 181 AIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSK 240

Query: 241 SAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREESG 281
           SAE +SVSRSVSRSRS SPVKSSR RSKSRSGSPR+ARE SG
Sbjct: 241 SAE-QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG 271

[Close]

BLAST of Cmc09g0260861 vs. NCBI nr
Match: XP_023533513.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533515.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533516.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533517.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 436.8 bits (1122), Expect = 1.4e-118
Identity = 251/286 (87.76%), Postives = 260/286 (90.91%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYK----YGRILDIELKIPPRPPCYCFVEFESVR 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYK    YGRILDIELKIPPRPPCYCFVEFE+VR
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR 60

Query: 61  DAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGG 120
           DAEDAIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y          GG GGGGGGGG
Sbjct: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY----------GGSGGGGGGGG 120

Query: 121 GGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYD 180
           GGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYD
Sbjct: 121 GGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYD 180

Query: 181 DMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSRSRSRTARR 240
           DMKYAIRKLDDTEF+NPWARAYIRVKKY+GSPT  RSR+RSRSRSRSRSRSRSRSR+ARR
Sbjct: 181 DMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARR 240

Query: 241 NRSKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREESG 281
           NRSKSAE +SVSRSVSRSRS SPVKSSR RSKSRSGSPR+ARE SG
Sbjct: 241 NRSKSAE-QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG 275

[Close]

BLAST of Cmc09g0260861 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.3e-100
Identity = 217/293 (74.06%), Postives = 242/293 (82.59%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR      GG GGGG G GGGGGGGG  RF
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------GGYGGGGSGYGGGGGGGGSARF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKY
Sbjct: 121 GVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG------SPTRSRSRSRSRSRSRSRSRSRSRTARR 240
           AIRKLDDTEFRNPWAR +IRVKKY+       SP+RSRSRSRSRSRSR R RS SR+   
Sbjct: 181 AIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSL 240

Query: 241 NRSKS-------AERRSVSRSVSRSRSPSP-VKSSRPRSKSRSGSPRQAREES 280
           +RSKS       + RRS+SRS+S+SRSPSP  K S PR+ SRS S  ++R  S
Sbjct: 241 SRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRS 287

[Close]

BLAST of Cmc09g0260861 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.0e-76
Identity = 178/284 (62.68%), Postives = 214/284 (75.35%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GGG G G GG          
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSR-------- 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKY
Sbjct: 121 GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRTARRN 240
           A++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSR+  R+
Sbjct: 181 ALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRS 240

Query: 241 RSKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREES 280
           RS+S + +S  RS ++S S SP     PRSKSRS SPR++R  S
Sbjct: 241 RSRSPKAKSSRRSPAKSTSRSP----GPRSKSRSPSPRRSRSRS 271

[Close]

BLAST of Cmc09g0260861 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 6.4e-74
Identity = 178/278 (64.03%), Postives = 208/278 (74.82%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRTIYVGNLP DI+E E+EDLF KYG ++ I+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI  RDGY+FDG  LRVELAHGGR  SS D R SY        G G GG GGG GGG   
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSY-------SGRGRGGRGGGDGGGRER 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           G S+RSEYRV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT GIVDYT+Y+DMKY
Sbjct: 121 GPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRTARRN 240
           A   LDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSR RS SRSRSR+  R+
Sbjct: 181 A---LDDTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRS 240

Query: 241 RSKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPR 274
           +S+S + +S+ RS ++S S SP   SR RSKSRS SPR
Sbjct: 241 KSRSPKAKSLRRSPAKSTSRSP--RSRSRSKSRSLSPR 265

[Close]

BLAST of Cmc09g0260861 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 4.5e-67
Identity = 166/282 (58.87%), Postives = 195/282 (69.15%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR++RTIYVGNLP DI++ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGR--GPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGG 120
           AI  RDGY+FDGCRLRVE+AHGGR   PS     SSY                       
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR------------------- 120

Query: 121 RFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDM 180
               S+RS+YRV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY+NYDDM
Sbjct: 121 --APSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDM 180

Query: 181 KYAIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRS-RSRSRSRSRSRS-RSRSRT 240
           KYAIRKLD TEFRN ++ AYIRV++Y+      SP  S+S RSRSRSR  S S  S+SR+
Sbjct: 181 KYAIRKLDATEFRNAFSSAYIRVREYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRS 240

Query: 241 ARRNRSKSAERRSVSRSVSRSRSPSPVKS-SRPRSKSRSGSP 273
               RS S   R +SRS S   S S  +S S+ RS+SRS SP
Sbjct: 241 VSPARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSP 261

[Close]

BLAST of Cmc09g0260861 vs. ExPASy Swiss-Prot
Match: Q6DII2 (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.5e-56
Identity = 159/256 (62.11%), Postives = 187/256 (73.05%), Query Frame = 0


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           IYVGNLP DI+  +IED+FYKYG I DI+LK     P + FVEFE  RDAEDA+  RDGY
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGG----GRFG-VS 128
           ++DG RLRVE    GRG  +  R    GGGGGGGGGGGGGGGGGGGGGG    GR+G  S
Sbjct: 78  DYDGYRLRVEFPRSGRG--AGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPS 137

Query: 129 KRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIR 188
           +RSEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+V++   +DM YA+R
Sbjct: 138 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVR 197

Query: 189 KLDDTEFR-NPWARAYIRVKKYDG--SPT--RSRSRSRSRSRSRSRSRSRSRTARRNRSK 248
           KLD+T+FR +    AYIRV K DG  SP+  RSRSRSRSRSRSRSRS SRSR+    RS+
Sbjct: 198 KLDNTKFRSHEGETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSR 257

Query: 249 SAERRSVSRSVSRSRS 255
            + R S   S SRSR+
Sbjct: 258 GSPRYSPRHSRSRSRT 267

[Close]

BLAST of Cmc09g0260861 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 3.0e-135
Identity = 277/281 (98.58%), Postives = 278/281 (98.93%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSRSRSRTARRNRSK 240
           AIRKLDDTEFRNPWARAYIRVKKYDGSPT  RSRSRSRSRSRSRSRSRSRSRTARRNRSK
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240

Query: 241 SAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREES 280
           SAERRSVSRSVSRSRSPSP+KSSRPRSKSRSGSPRQARE S
Sbjct: 241 SAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 281

[Close]

BLAST of Cmc09g0260861 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.8e-130
Identity = 267/279 (95.70%), Postives = 272/279 (97.49%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY   GGGGGGGGGGGGGGGGGGGGRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---GGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRTARRNRSKSA 240
           AIRKLDDTEF+NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS+SRSR+ARRNRSKS 
Sbjct: 181 AIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSQSRSRSARRNRSKSV 240

Query: 241 ERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREES 280
           E RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPR+ RE S
Sbjct: 241 E-RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGREGS 275

[Close]

BLAST of Cmc09g0260861 vs. ExPASy TrEMBL
Match: A0A6J1K1U7 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=LOC111491646 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.5e-118
Identity = 245/284 (86.27%), Postives = 255/284 (89.79%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y               GG GGGGGRF
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY---------------GGSGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPT----RSRSRSRSRSRSRSRSRSRSRTARRNR 240
           AIRKLDDTEF+NPWARAYIRVKKY+GSPT    R+RSRSRSRSRSRSRSRSRSR+A+RNR
Sbjct: 181 AIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSRSAKRNR 240

Query: 241 SKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREESG 281
           SKSAE +SVSRSVSRSRS SPVKSSR RSKSRSGSPR+ARE SG
Sbjct: 241 SKSAE-QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG 268

[Close]

BLAST of Cmc09g0260861 vs. ExPASy TrEMBL
Match: A0A6J1IB34 (serine/arginine-rich splicing factor SR34A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.4e-118
Identity = 253/292 (86.64%), Postives = 257/292 (88.01%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY-GGGGGGGGGGGGGGGGGGGGGGGR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY GGGGGGGGGGGGGGGGGGGGGGGR
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGGR 120

Query: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMK 180
           FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTNYDDMK
Sbjct: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMK 180

Query: 181 YAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSR--------------------- 240
           YAIRKLDDTEFRNPWAR YIRVKKYDGSPTRSRSRSRSR                     
Sbjct: 181 YAIRKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGR 240

Query: 241 ----------SRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPVKS 261
                     SRSRSRSRSRSR+AR NRSKSAE RSVSRSVSRSRSPSPVKS
Sbjct: 241 DRSRSRNRSQSRSRSRSRSRSRSARPNRSKSAE-RSVSRSVSRSRSPSPVKS 291

[Close]

BLAST of Cmc09g0260861 vs. ExPASy TrEMBL
Match: A0A6J1H330 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN=LOC111459559 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 9.8e-118
Identity = 243/280 (86.79%), Postives = 251/280 (89.64%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y               GG GGGGGRF
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY---------------GGSGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRTARRNRSKSA 240
           AIRKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSRSRSRSRSRS   RRNRSKSA
Sbjct: 181 AIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRS--VRRNRSKSA 240

Query: 241 ERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREESG 281
           E +SVSRSVSRSRS SPVKSSR RSKSRSGSPR+ARE SG
Sbjct: 241 E-QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGSG 262

[Close]

BLAST of Cmc09g0260861 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 366.7 bits (940), Expect = 1.7e-101
Identity = 217/293 (74.06%), Postives = 242/293 (82.59%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR      GG GGGG G GGGGGGGG  RF
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------GGYGGGGSGYGGGGGGGGSARF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKY
Sbjct: 121 GVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG------SPTRSRSRSRSRSRSRSRSRSRSRTARR 240
           AIRKLDDTEFRNPWAR +IRVKKY+       SP+RSRSRSRSRSRSR R RS SR+   
Sbjct: 181 AIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSL 240

Query: 241 NRSKS-------AERRSVSRSVSRSRSPSP-VKSSRPRSKSRSGSPRQAREES 280
           +RSKS       + RRS+SRS+S+SRSPSP  K S PR+ SRS S  ++R  S
Sbjct: 241 SRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRS 287

[Close]

BLAST of Cmc09g0260861 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 366.7 bits (940), Expect = 1.7e-101
Identity = 217/293 (74.06%), Postives = 242/293 (82.59%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR      GG GGGG G GGGGGGGG  RF
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------GGYGGGGSGYGGGGGGGGSARF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKY
Sbjct: 121 GVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG------SPTRSRSRSRSRSRSRSRSRSRSRTARR 240
           AIRKLDDTEFRNPWAR +IRVKKY+       SP+RSRSRSRSRSRSR R RS SR+   
Sbjct: 181 AIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSL 240

Query: 241 NRSKS-------AERRSVSRSVSRSRSPSP-VKSSRPRSKSRSGSPRQAREES 280
           +RSKS       + RRS+SRS+S+SRSPSP  K S PR+ SRS S  ++R  S
Sbjct: 241 SRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRS 287

[Close]

BLAST of Cmc09g0260861 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 364.8 bits (935), Expect = 6.3e-101
Identity = 209/276 (75.72%), Postives = 231/276 (83.70%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR      GG GGGG G GGGGGGGG  RF
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------GGYGGGGSGYGGGGGGGGSARF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           GVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTNYDDMKY
Sbjct: 121 GVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG------SPTRSRSRSRSRSRSRSRSRSRSRTARR 240
           AIRKLDDTEFRNPWAR +IRVKKY+       SP+RSRSRSRSRSRSR R RS SR+   
Sbjct: 181 AIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSL 240

Query: 241 NRSKS-------AERRSVSRSVSRSRSPSPVKSSRP 264
           +RSKS       + RRS+SRS+S+SRSPSP K   P
Sbjct: 241 SRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSP 270

[Close]

BLAST of Cmc09g0260861 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.9e-77
Identity = 178/284 (62.68%), Postives = 214/284 (75.35%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GGG G G GG          
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSR-------- 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKY
Sbjct: 121 GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRTARRN 240
           A++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSR+  R+
Sbjct: 181 ALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRS 240

Query: 241 RSKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREES 280
           RS+S + +S  RS ++S S SP     PRSKSRS SPR++R  S
Sbjct: 241 RSRSPKAKSSRRSPAKSTSRSP----GPRSKSRSPSPRRSRSRS 271

[Close]

BLAST of Cmc09g0260861 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.9e-77
Identity = 178/284 (62.68%), Postives = 214/284 (75.35%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GGG G G GG          
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSR-------- 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180
           G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT Y+DMKY
Sbjct: 121 GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKY 180

Query: 181 AIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSRSRTARRN 240
           A++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRSRSR RS SRSR+  R+
Sbjct: 181 ALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRS 240

Query: 241 RSKSAERRSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREES 280
           RS+S + +S  RS ++S S SP     PRSKSRS SPR++R  S
Sbjct: 241 RSRSPKAKSSRRSPAKSTSRSP----GPRSKSRSPSPRRSRSRS 271

The following BLAST results are available for this feature:

BLAST of Cmc09g0260861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137780.1	8.0e-130	95.70	serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1...	[more]
XP_038907230.1	4.1e-126	91.00	serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 s...	[more]
XP_011654574.2	6.1e-122	88.41	serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 ser...	[more]
XP_023533518.1	2.6e-120	89.01	serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_023533513.1	1.4e-118	87.76	serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp...	[more]

BLAST of Cmc09g0260861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVS6	2.3e-100	74.06	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O22315	4.0e-76	62.68	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	6.4e-74	64.03	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	4.5e-67	58.87	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q6DII2	3.5e-56	62.11	Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE...	[more]

BLAST of Cmc09g0260861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLR9	3.0e-135	98.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1	[more]
A0A6J1C7M8	3.8e-130	95.70	serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1K1U7	1.5e-118	86.27	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IB34	3.4e-118	86.64	serine/arginine-rich splicing factor SR34A-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1H330	9.8e-118	86.79	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cmc09g0260861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49430.1	1.7e-101	74.06	SER/ARG-rich protein 34A	[more]
AT3G49430.3	1.7e-101	74.06	SER/ARG-rich protein 34A	[more]
AT3G49430.2	6.3e-101	75.72	SER/ARG-rich protein 34A	[more]
AT1G02840.1	2.9e-77	62.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	2.9e-77	62.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 129..198 e-value: 1.3E-7 score: 41.3 coord: 8..78 e-value: 3.1E-22 score: 89.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 130..192 e-value: 3.6E-12 score: 45.9 coord: 9..76 e-value: 2.4E-18 score: 65.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 16.568354
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 128..206 score: 10.20669
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..123 e-value: 1.1E-29 score: 105.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 127..205 e-value: 5.9E-24 score: 85.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 249..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..237
None	No IPR available	PANTHER	PTHR23147:SF63	SERINE/ARGININE-RICH SPLICING FACTOR SR34A	coord: 2..279
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..279
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 128..203 e-value: 2.03008E-43 score: 140.72
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0260861.1	Cmc09g0260861.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding