Cmc09g0256161 (gene) Melon (Charmono) v1.1

Overview
NameCmc09g0256161
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description14 kDa proline-rich protein dc2.15
LocationCMiso1.1chr09: 21114028 .. 21114656 (+)
RNA-Seq ExpressionCmc09g0256161
SyntenyCmc09g0256161
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATGGAAATAATAATATGGAATTCATATATTAAATTCTTGATTTACTAACATTTTTCTCACATAGATAAAATCATCAATATGTGAGAACTTATTAAAGAAATGATCGACGAAAGATAAAACTGGAACAATCGAAAACAAATTAGACATTGAAATAGCAACGAAAGGAAATGATGGTAACAAATTAATTTAGCATTTGAAGCCGTCTACAATTTTCTTATTGCAGCCATTAAGAATCAAGGAGAGGTCGACGGGAATGTTGAGTCTCACTCCCAACACATTGGCTTTAAGAGCAGTGCAAAGGCACACAGCAGCATCAAGATCAGCTATCCCTTGGATCAAAGGGCAGCAAGAAGTCTTGCCGATCTCGACACCAACGACACCCCCGAGCAATTTCGCACAAACCCCGAGCTTGAGAGTGTCTATTGGGCATTTGTTGTCATCCTCAGCGTAAACGAAGGAGGAGAAAACAAGATTGAGAGCCAGGAGAAATGCAAGAGAGACGGTAGCCTTGGAAGCCATAGAGTTTGATGTCTTTGAAGCTCAATGGAAACCAAAAGCTAAATTATTATTGAGTACTGAGGGCTAGGTTGGTGTGTGAGAATTGGAGATGGGGTTTCAGGGTTTTTA

mRNA sequence

TTATGGAAATAATAATATGGAATTCATATATTAAATTCTTGATTTACTAACATTTTTCTCACATAGATAAAATCATCAATATGTGAGAACTTATTAAAGAAATGATCGACGAAAGATAAAACTGGAACAATCGAAAACAAATTAGACATTGAAATAGCAACGAAAGGAAATGATGGTAACAAATTAATTTAGCATTTGAAGCCGTCTACAATTTTCTTATTGCAGCCATTAAGAATCAAGGAGAGGTCGACGGGAATGTTGAGTCTCACTCCCAACACATTGGCTTTAAGAGCAGTGCAAAGGCACACAGCAGCATCAAGATCAGCTATCCCTTGGATCAAAGGGCAGCAAGAAGTCTTGCCGATCTCGACACCAACGACACCCCCGAGCAATTTCGCACAAACCCCGAGCTTGAGAGTGTCTATTGGGCATTTGTTGTCATCCTCAGCGTAAACGAAGGAGGAGAAAACAAGATTGAGAGCCAGGAGAAATGCAAGAGAGACGGTAGCCTTGGAAGCCATAGAGTTTGATGTCTTTGAAGCTCAATGGAAACCAAAAGCTAAATTATTATTGAGTACTGAGGGCTAGGTTGGTGTGTGAGAATTGGAGATGGGGTTTCAGGGTTTTTA

Coding sequence (CDS)

ATGTTGAGTCTCACTCCCAACACATTGGCTTTAAGAGCAGTGCAAAGGCACACAGCAGCATCAAGATCAGCTATCCCTTGGATCAAAGGGCAGCAAGAAGTCTTGCCGATCTCGACACCAACGACACCCCCGAGCAATTTCGCACAAACCCCGAGCTTGAGAGTGTCTATTGGGCATTTGTTGTCATCCTCAGCGTAA

Protein sequence

MLSLTPNTLALRAVQRHTAASRSAIPWIKGQQEVLPISTPTTPPSNFAQTPSLRVSIGHLLSSSA
Homology
BLAST of Cmc09g0256161 vs. NCBI nr
Match: KAF9616337.1 (hypothetical protein IFM89_029591 [Coptis chinensis])

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 0

Query: 2   LSLTPNTLALRAVQRHTAASRSAIPWIKGQQEV---LPISTPTTPPSNFAQTPSLRVSIG 61
           L L PN LA  AV +  AASRSA PW++ QQE    +PI+ PT PPS  AQTPS RVS+G
Sbjct: 812 LRLIPNMLAFIAVHKQRAASRSANPWMRVQQEFSAGVPITIPTNPPSKLAQTPSFRVSLG 871

BLAST of Cmc09g0256161 vs. NCBI nr
Match: KAF9616338.1 (hypothetical protein IFM89_029592 [Coptis chinensis])

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-07
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 2   LSLTPNTLALRAVQRHTAASRSAIPWIKGQQEVLPISTPTTPPSNFAQTPSLRVSIGHL 61
           L L PN LAL AV +H AASRSA PW++ QQ +L    P T PS  AQTPS RVS+GHL
Sbjct: 219 LRLIPNMLALIAVHKHKAASRSASPWMREQQGLL-AGVPITRPSKLAQTPSFRVSLGHL 276

BLAST of Cmc09g0256161 vs. NCBI nr
Match: PON92988.1 (hypothetical protein TorRG33x02_112670 [Trema orientale])

HSP 1 Score: 64.3 bits (155), Expect = 4.4e-07
Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 1  MLSLTPNTLALRAVQRHTAASRSAIPWIKGQQEV---LPISTPTTPPSNFAQTPSLRVSI 60
          ML L P  LAL AVQR  AASRSA PWI+ QQ V   +P+ T T PPS  A TP+ R S+
Sbjct: 1  MLRLIPRILALMAVQRQIAASRSARPWIRVQQGVTGGVPMVTLTNPPSKSAHTPNFRASL 60

BLAST of Cmc09g0256161 vs. NCBI nr
Match: RXH97295.1 (hypothetical protein DVH24_035963 [Malus domestica])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 1  MLSLTPNTLALRAVQRHTAASRSAIPWIKGQQEV---LPISTPTTPPSNFAQTPSLRVSI 60
          ML L P  LAL AVQRHTAASRSA PW++ QQ     LP+   + P    AQTP+LRVS+
Sbjct: 1  MLRLIPKMLALMAVQRHTAASRSASPWMREQQGSTGGLPMVMLSNPLRTLAQTPNLRVSL 60

Query: 61 GHLL 62
          G L+
Sbjct: 61 GQLV 64

BLAST of Cmc09g0256161 vs. NCBI nr
Match: KAF9619380.1 (hypothetical protein IFM89_006567 [Coptis chinensis])

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 4  LTPNTLALRAVQRHTAASRSAIPWIKGQQEV---LPISTPTTPPSNFAQTPSLRVSIGHL 61
          L P+  AL AV +H AASRSA PW++ QQ +   +P STP  PPS  AQTPS   S+GH+
Sbjct: 30 LIPSMFALIAVHKHKAASRSASPWMRVQQGLFAGVPTSTPINPPSKLAQTPSFSASLGHV 89

BLAST of Cmc09g0256161 vs. ExPASy TrEMBL
Match: A0A2P5F5C4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_112670 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = 0

Query: 1  MLSLTPNTLALRAVQRHTAASRSAIPWIKGQQEV---LPISTPTTPPSNFAQTPSLRVSI 60
          ML L P  LAL AVQR  AASRSA PWI+ QQ V   +P+ T T PPS  A TP+ R S+
Sbjct: 1  MLRLIPRILALMAVQRQIAASRSARPWIRVQQGVTGGVPMVTLTNPPSKSAHTPNFRASL 60

BLAST of Cmc09g0256161 vs. ExPASy TrEMBL
Match: A0A498JQ76 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_035963 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0

Query: 1  MLSLTPNTLALRAVQRHTAASRSAIPWIKGQQEV---LPISTPTTPPSNFAQTPSLRVSI 60
          ML L P  LAL AVQRHTAASRSA PW++ QQ     LP+   + P    AQTP+LRVS+
Sbjct: 1  MLRLIPKMLALMAVQRHTAASRSASPWMREQQGSTGGLPMVMLSNPLRTLAQTPNLRVSL 60

Query: 61 GHLL 62
          G L+
Sbjct: 61 GQLV 64

BLAST of Cmc09g0256161 vs. ExPASy TrEMBL
Match: A0A0A9LSU9 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.0e-06
Identity = 38/63 (60.32%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 1  MLSLTPNTLALRAVQRHTAASRSAIPWIKGQQE---VLPISTPTTPPSNFAQTPSLRVSI 60
          M  L P TLALRAVQR TAASRSA P   GQ E    LP+ T  T PS  A TPS  VS+
Sbjct: 1  MSRLMPRTLALRAVQRQTAASRSASPSSSGQHESVGTLPMVT-FTSPSTLAHTPSFSVSL 60

BLAST of Cmc09g0256161 vs. ExPASy TrEMBL
Match: A0A314Z803 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_06002 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 1  MLSLTPNTLALRAVQRHTAASRSAIPWIKGQQEV---LPISTPTTPPSNFAQTPSLRVSI 60
          +L L P  LAL AVQRHTA SRS  P  K QQ V    PI  PT P S  AQTP+ R S+
Sbjct: 9  ILRLIPRILALMAVQRHTATSRSRSPSSKAQQGVSGGFPIIAPTAPLSKLAQTPNFRASL 68

BLAST of Cmc09g0256161 vs. ExPASy TrEMBL
Match: A0A2P5BYI9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_200190 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-05
Identity = 34/63 (53.97%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 1  MLSLTPNTLALRAVQRHTAASRSAIPWIKGQQEV---LPISTPTTPPSNFAQTPSLRVSI 60
          ML L P  LAL  VQR  AASRSA PWI+ QQ V   +P+ T   PPS  A TP+ R S+
Sbjct: 1  MLRLIPRILALMTVQRQIAASRSARPWIRVQQGVTGGVPMVTLANPPSKSAHTPNFRASL 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF9616337.13.1e-0859.68hypothetical protein IFM89_029591 [Coptis chinensis][more]
KAF9616338.12.0e-0761.02hypothetical protein IFM89_029592 [Coptis chinensis][more]
PON92988.14.4e-0758.73hypothetical protein TorRG33x02_112670 [Trema orientale][more]
RXH97295.12.9e-0656.25hypothetical protein DVH24_035963 [Malus domestica][more]
KAF9619380.13.7e-0653.33hypothetical protein IFM89_006567 [Coptis chinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5F5C42.1e-0758.73Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_112670 PE=4 SV... [more]
A0A498JQ761.4e-0656.25Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_035963 PE=4 SV=1[more]
A0A0A9LSU99.0e-0660.32Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A314Z8031.5e-0555.56Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_060... [more]
A0A2P5BYI92.0e-0553.97Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_200190 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc09g0256161.1Cmc09g0256161.1mRNA