Cmc09g0254481 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0254481
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	General transcription factor IIH subunit
Location	CMiso1.1chr09: 20243683 .. 20250413 (+)
RNA-Seq Expression	Cmc09g0254481
Synteny	Cmc09g0254481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCACTCATACGCTACTCCTTCAAGGTTTTCTTCCCAGAACACTCTCTTCATCTCTTCAATTTCACCGTTTTTCTCTATCTAAAAAGTAAACGAATCAAACAAACTTCAAACTGTTTTTCTCTTCATTCTTTCGTACTTAGACTCAGAGATCGGGAGCAGTTAAATCCACAAATCGGAAGAACATGGGTCAAGCTTTTCCCGAACTCTTCGACTCATTTTTTGGCAACTCCGAGATGCGGGTATCATATATTCTTCTTTATTTTTGTTTTATAAATTATTTTCTACCATTGGATTTCATACCCTTATGTGCCCATTTGATTTTGTTCATTAAATATGCAACTTCTTGATTTATTCCCCCCTATTCCGCTGTTCAATCTGTCCCACGGTTGCATTGATATGTCTTCGTAATGCTGATTTCTTCTGATTGTAGGATTTTCTTAACTTATTGTACCCAGGTGCATTAATATGTCTTGCTAATGTTGATGTTTAATTTGAGATGGAGGTCTCAGTCGAACTCTCTGGTCAAAGTGTTACTTCGATGTTGTTCTCTGATAAGAAACTGGGGATTACATTGCAAAAGAAAACAAAATCACAGCCTAAGGGCAGGGGTAGAGGAAACTCTCTCCCAACAAAACTATACAAGAAGAGCCTCCCAATTGTTAATAATCATAAGAAGACGGTAGTTCCAAAAGAATTTAGTGTAATTTGTACCCCACCAAGAGGCTGTATGCTGCACAAGAACCCAAGAAGAATCACAAGAAGTAAACTCATCTTCAAAGATTCTACCATTCCTCTTCTTCCAAAGATGCCATAAAAGCACCCGGGAAGTGCAGCTCCAAAGGATTTTTCCTTTTCCATGAAAATTTCTACCATTTAGACTATCCATCATCTAGTCATTGACCTTCTTCGGAAGGCAACTTTTCAACCCAAAAGTATCAAGGAGATCGTTCCACCCTCTTGCAGTGAAAATGACTTTGAGATCCAGTCATTGATGTTGGTCTATGAATCAGATATACTTTACAATTTGACTTTGACAAGGAGTCAGTCTCACCAGCTATTGATTGGTTGCACATATCTTACATTATAGAGAAAATGGTCCACTTGTGTCCCAATTTTGATGGTAGGTGTTAATTTACAACCGTACTTGAATATGATTTGGTCTATTCTATGAGCTGTACAATTGCGTCCTCGAGTTCCAAGTGGTAGATGTTAATTTGTTGTTCTCTGCAAATCATGATTGATTTATAGGCATAAAATTTGACATTGCCATACAACCCAAGGAAGAGATGTTGTATTTACATTAACTAGAAAAGTTGGGGACTATTTGGTAGTTTGCTGTTCATTGTAGTTTTTATCACTCTCCCCTCGAGCAAAAAGCCTAGGTCGTTGCTCCATATAAACTTCCTTCGGAAGATCACCTTGGAGAAAAAGCATTTTTATGTCAAGTTGATATAAAGGCCAATCTTGAGATTCTGCCATAGAAAAGAATAACCTGACAAAAGTGAGTTTAGCAGCAGAAGAGAACGTATCAAGTAATCAACCCCATACGTCTAAGCATAACCTTTAGCCACAAGGCGTGCTTTTAGACGAGCTATTGATCCATCGGGATTAACCTTAATTGCGAACACCTAGTTACACCCAATAGTATTCTTTCCTGCTGGAAGAGATACTAAATCTTGAGTACCATTATCATCTAAGGCATTCACCTCTTCAATTTTTGCACTACGCCACCCAAAATGAGACAAAGCTTCATAAACGGTCTTAGGTATTGAGATAGAGTGAAGAGACTTAACAACCGAATATGAAGGAAATGATAATTGGTCATAAGATACACAAGAAGCAATAAGATAAGTGCAAGAACGTTTACCTTTTCGAAGGAAAATGAAAAGCTCATCACTCGGCCCTGGATCTGATAACAAAGAGTCTTTTGGGACATAACATTAATCTGGAGGATGTTGCCTACGAGAGTAGACTTTAGTTTTAGGTGGACAATTAGGGGTAGGCACTAGAAGAGACAGATGTGGGGAGGGAATTGGAGACGTGAGAGTATAAATAGAAAAAGGTAGTGAAAGGTTGTCCTCAAAGAAAGTAACGTCTCAAGATACAAAATATTTATTCAAACTTGGACAATAACATTTGTATCCTTTTTGAACACGGAAATAACCTAAGAAAATGCACTTCAAAGACTTGGGGTCTAACTTTGTCAAAGTAGGACAAACATCTCGAACAAAACAAGTACAATCGAATATTTTAGGTTCAATAGGAAATATTCGATATTTAATATTAAGAAAGTTTTATTAAATATTTATGTTTTGTCTGGTTTATGATCGACAATTTATAAGAACGTGCTATAAAGTTATAAGTTACTATGATATGACTATATAAAGTGAAACCCCTTATTGTATGTTGCGTATAAAGTTAGTGGCAGCTACCGTCCTACCTATAGCTATGTACACACTAGATTGTACTTTCAGGTCCGCTAGATTTGTGTGCCTAATGGCCAACTAATTTTGGTTTTAAAATAGCATGCATAGTAGTAATGACCCTAGTCAGGGACCTCAAAAATCGGATTGTTACAAGAAAGTTCTTTAGTTCATAATTGTATCAATATCTCTAACTTGCAAAGAAGGCGATATAAAACTAGGTACAGTTTAATGTTATGCTGGCTCTTTCGAATTTTGTAGTTTGTTTTTCTTGTTTTCTATCTAATTGATTATATCTTCCAGTGGTCTCGTTATTGAAGAGTAGGCAATATGTTTAAAATGATATTCTGCTTTGGAAATATTATGAAAAGTGTACCCTTTGTTCTCCCTTCTCTTGAAAGATACTGCCAAGTTGCACAAATGTGGTTTAAAATAAACTCTTGAATCATCACTTGGATTTAGCAGCTTTCATTATTTCCCTCTATGGTTGTCATTAAGTTGAAGAATGGGAGATGCATCATGCTTCCTAAACTTACGGAGAAAAGGTTATCCAGAAGTAATTTTTGTAACTGACAAAATGATGATGATTAACTATCCTGTTACAGTTAAACACTATCTTTTTTGGTTTGGCAGTATTATGGTTTTAATGGTCAATGAAGAGAATTTTTCAATATTGACATAAATTAAATTTTCAATAGTTTGTCTTTTTGTAATTTTGTTTCTCCCGGAAATCTGTTACTTTCTATCATTCTGTTGATTATCTCTTTTTTTGTTCCCTCTAAGTTGATTGGATTTATTTATCTTCACTGTTTTCAGAAGATGATGGCTTAGGGGTGGAACATTTCTTGGAACCTGGGTTTCGCAAATGCTTGTTGGGAAGAAGTAATTGAAATCCAATGAAATCAAACCCAACTGGAGGTCATTGCTGATTCCTCATCCCTCCTATTGACGAATAGGACGCCATTACCTAAATTTTTTTACCGACCTACTGTATTCCCCAAGTTGGGATTTTTGTGTGTAGAATTTGTTTTAGGTATTGGGGACTCATCAATTTGATCTTGTTTCAAAACCCAACAAGAGTAATCTTCTGAAATAGTCCTTAAATATGAACAATGGGGAAAATAGGCGATTGAATGGGGAAGCTGATGAAGAAGATGATGATGATGATGCCAATGGACTTGCTGCGTGGGAAAGGACTTATGCGGATGATAGGTCGTGGGAAGCCCTGCAAGAGGATGAGTCTGGACTCCTTTGTCCGATCGACAATAAGGCAATTTACCATGCCCAGTATCGTAGGCGCCTTCGTACCCTTTCTTCCTTAGCAACCACTGCTCGGATTCAGAAGGGTCTTATTCGCTATCTCTATATCGTCATCGACTTCTCCAAGGTATTCTTTTTTCTTCCATGACTCTATTACTACATTAGTATTTTTTTTTTTTTTTTGTGATAACTTACTACATCAGTAAATGTTTCAAGGAGGTTCTGTGCCTTGGTCTCTCATCTTCTTATTGAGAAAAGGAATTTGTTCTAATGTTGAAGTTAAATGCGTAGCATTGCTCCTGAAATATATCATAACCATCAAATTGCATTTGGTTTTTTTAGCTTACCTAAGAACTGTTATGTGATATAAATTCCTTGTCTCCCCAATTGTTTGTTCCCTGATTATGTTTCAAAGGGTTTGGAGAAGTATCTCCACAGTTATTCCATAGAGGATTGCTACTCATTTAATCCAACTACTATGTAGTGAATGAAACATGTGCTACCTTGAGTTTTTTTTTTTGAGCAAGTATGACTTATGTTCATAGAAACTGTAAATCACTGGAGATAAATAACTTTGAAAATATGGTTACGGAATGGAGGTTTTGCTTTCTCTATTTTTTTTCATTTTGCTTATTCCACCATGGGCAGGCTGCTACAGAAATGGATTTCCGACCAAGTCGAATGGCTGTTGTGGCAAAACATGTAGAGGCTTTCGTAAGGGAATTCTTTGACCAAAATCCACTCAGCCAGATTGGTTTGGTGACTATAAAAGATGGAGTTGCTCATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCTCATGTTAAAGCGTTAATGGGTAAACTGGAATGCTCAGGTGATGCTTCCTTGCAGAATGGTCTGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCATAGAGAAGTTTTAGTCTTATACTCTGCTCTTAATTCTTGTGATCCTGGGGACATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTTATTGGTCTTACTGCAGAAATTTTTATATGCAGACATCTCTGCCAAGAAACTGGTGGCTCATACTCTGTCGCATTGGATGAGGTTAGTTCAATAGATGTGTTAATTTCCCAAAATTGAGAGAAATTGAAATGGCTATTTTTTTAGTTGATCAGCTAATTGAACCGACCATAAATGAAGCTTAACAGAGAACACAGTTATGAAACAGAAGTTCAAAGTTTAATTACTATAGCAAGATTTTATTTGATGTTTTTATATATGGAAGTTCTGTTTCCTAAATCTTAGTGGAATACTTGCCTTCGTTTTATTTACAGTCTCACTTCAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCAATTGCAGACTCTGCCATGCCTAATTTAATCAAGATGGGTTTTCCACAAAGAGCAGCAGAGAGTTCCATTGCAATATGTTCATGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCAAGGGTTTGTGAGCTTCCCACAGAGTGTCGAATTTGTGGACTGACTCTTATCTCCTCACCCCATTTGGCTAGGTCGTATCATCATCTTTTTCCAATTATACCATTTGATGAAGTCTCTGATAAAGTATTTCATGACCCACGACACCAACTTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTGGTAAGAACTCAATGAAACATGATATTTGAAGCTCTCAAATGAAACTTCTTTTTATGACATTTGTTGTCTTCTAATAATATAGTGCACATACCGTTATGCCCAATTCGTCAGCATTTTGTATCGTGATATCTTAGAATCAGATGATTTGAAGATTAAAAACATATTTATTGTATTTACTACTAGGAGTTTGTTAATGCCTTGCAATGTTCGACTCCTAAAGCAAAAAAATGATGTGTATAAGAGATCTTCCACGTTTCTTGTTTGTGTTTTGGTCATTCTTCAGTATTAATTATTGTAAGCACCAGTACTACAATCTGCTGAAACAAGCATAGGGAACTAAGTTGTTATCTATATAATTTGGTATCGCCTTCTCTGTTGGGTGACTTCTTTTTATTACATTGTTCATGTGTGATTTTGTTTATGGCAATGGGAGCTACTTATACTTATGACTTCCAAGTAAGAATAGATAAACATGGATGATTTGTTGTTACTTTATGATTTGCTGAATCTAACATTTTCACTCTCCATTCAATGTACTTTTCATTTTAGGCACACGTAACAGTCCAGGCATCCGTGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTCAGGCATCCCAAATTAGCGACTTTTGACGAATGAATGTCTACTTTTAGATGCAACAATATGGCCCTAACCGAATCCAAATAGGACGCTTCTCAGTCTATTCATTTGCGTAAAAAGCTGGAATGAGAGCTTTGTATACCACTGCTTAAAATAATGTTGAATGAATGCTGAATCCAAGGCTCACATTGTTACCGCAATCATCTTTCGTGTTTCTCAACAGCTCCTAAACCAATTTCAGACCGATCCAAAGCTTGTGGCTTTTTGACACTTGATGCCATTGTTGAAATTGGGCGGAAGATTAATTTTTCAAGATGAAAGGCTGAAAGCCAATTTCCTTCTAGGCTGCAGGATGGACGACTTTACTTGAGTGTACCCAAAATTGACCCCCCCAAATAGACATTTTTCCATTTTCATGAGATTTTGTAAAAACTTGATATTAATTATTATCCGATTCAGGGTGTATTTGACATTCACATTCTTTTAGTTAAGTTATTAAAGAAGCGCGTGCCAGAAAACTTCAGTGTTTACTATTGACAATAAACATTCACATGTATCAATGTTGTAAATATTAGCCAATATGGTTATAGTGATCGTTATGGACAGGGGATTTTCTTGAGAAAATGGAAGAAATAGGTAATAGGGCATTCCTTTACTAATGCCTTT

mRNA sequence

AAAACCACTCATACGCTACTCCTTCAAGGTTTTCTTCCCAGAACACTCTCTTCATCTCTTCAATTTCACCGTTTTTCTCTATCTAAAAAGTAAACGAATCAAACAAACTTCAAACTGTTTTTCTCTTCATTCTTTCGTACTTAGACTCAGAGATCGGGAGCAGTTAAATCCACAAATCGGAAGAACATGGGTCAAGCTTTTCCCGAACTCTTCGACTCATTTTTTGGCAACTCCGAGATGCGGAAGATGATGGCTTAGGGGTGGAACATTTCTTGGAACCTGGGTTTCGCAAATGCTTGTTGGGAAGAAGTAATTGAAATCCAATGAAATCAAACCCAACTGGAGGTCATTGCTGATTCCTCATCCCTCCTATTGACGAATAGGACGCCATTACCTAAATTTTTTTACCGACCTACTGTATTCCCCAAGTTGGGATTTTTGTGTGTAGAATTTGTTTTAGGTATTGGGGACTCATCAATTTGATCTTGTTTCAAAACCCAACAAGAGTAATCTTCTGAAATAGTCCTTAAATATGAACAATGGGGAAAATAGGCGATTGAATGGGGAAGCTGATGAAGAAGATGATGATGATGATGCCAATGGACTTGCTGCGTGGGAAAGGACTTATGCGGATGATAGGTCGTGGGAAGCCCTGCAAGAGGATGAGTCTGGACTCCTTTGTCCGATCGACAATAAGGCAATTTACCATGCCCAGTATCGTAGGCGCCTTCGTACCCTTTCTTCCTTAGCAACCACTGCTCGGATTCAGAAGGGTCTTATTCGCTATCTCTATATCGTCATCGACTTCTCCAAGGCTGCTACAGAAATGGATTTCCGACCAAGTCGAATGGCTGTTGTGGCAAAACATGTAGAGGCTTTCGTAAGGGAATTCTTTGACCAAAATCCACTCAGCCAGATTGGTTTGGTGACTATAAAAGATGGAGTTGCTCATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCTCATGTTAAAGCGTTAATGGGTAAACTGGAATGCTCAGGTGATGCTTCCTTGCAGAATGGTCTGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCATAGAGAAGTTTTAGTCTTATACTCTGCTCTTAATTCTTGTGATCCTGGGGACATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTTATTGGTCTTACTGCAGAAATTTTTATATGCAGACATCTCTGCCAAGAAACTGGTGGCTCATACTCTGTCGCATTGGATGAGTCTCACTTCAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCAATTGCAGACTCTGCCATGCCTAATTTAATCAAGATGGGTTTTCCACAAAGAGCAGCAGAGAGTTCCATTGCAATATGTTCATGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCAAGGGTTTGTGAGCTTCCCACAGAGTGTCGAATTTGTGGACTGACTCTTATCTCCTCACCCCATTTGGCTAGGTCGTATCATCATCTTTTTCCAATTATACCATTTGATGAAGTCTCTGATAAAGTATTTCATGACCCACGACACCAACTTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTGGCACACGTAACAGTCCAGGCATCCGTGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTCAGGCATCCCAAATTAGCGACTTTTGACGAATGAATGTCTACTTTTAGATGCAACAATATGGCCCTAACCGAATCCAAATAGGACGCTTCTCAGTCTATTCATTTGCGTAAAAAGCTGGAATGAGAGCTTTGTATACCACTGCTTAAAATAATGTTGAATGAATGCTGAATCCAAGGCTCACATTGTTACCGCAATCATCTTTCGTGTTTCTCAACAGCTCCTAAACCAATTTCAGACCGATCCAAAGCTTGTGGCTTTTTGACACTTGATGCCATTGTTGAAATTGGGCGGAAGATTAATTTTTCAAGATGAAAGGCTGAAAGCCAATTTCCTTCTAGGCTGCAGGATGGACGACTTTACTTGAGTGTACCCAAAATTGACCCCCCCAAATAGACATTTTTCCATTTTCATGAGATTTTGTAAAAACTTGATATTAATTATTATCCGATTCAGGGTGTATTTGACATTCACATTCTTTTAGTTAAGTTATTAAAGAAGCGCGTGCCAGAAAACTTCAGTGTTTACTATTGACAATAAACATTCACATGTATCAATGTTGTAAATATTAGCCAATATGGTTATAGTGATCGTTATGGACAGGGGATTTTCTTGAGAAAATGGAAGAAATAGGTAATAGGGCATTCCTTTACTAATGCCTTT

Coding sequence (CDS)

ATGAACAATGGGGAAAATAGGCGATTGAATGGGGAAGCTGATGAAGAAGATGATGATGATGATGCCAATGGACTTGCTGCGTGGGAAAGGACTTATGCGGATGATAGGTCGTGGGAAGCCCTGCAAGAGGATGAGTCTGGACTCCTTTGTCCGATCGACAATAAGGCAATTTACCATGCCCAGTATCGTAGGCGCCTTCGTACCCTTTCTTCCTTAGCAACCACTGCTCGGATTCAGAAGGGTCTTATTCGCTATCTCTATATCGTCATCGACTTCTCCAAGGCTGCTACAGAAATGGATTTCCGACCAAGTCGAATGGCTGTTGTGGCAAAACATGTAGAGGCTTTCGTAAGGGAATTCTTTGACCAAAATCCACTCAGCCAGATTGGTTTGGTGACTATAAAAGATGGAGTTGCTCATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCTCATGTTAAAGCGTTAATGGGTAAACTGGAATGCTCAGGTGATGCTTCCTTGCAGAATGGTCTGGAACTTGTCCACAGCTATCTAAATCAAATTCCATCATATGGGCATAGAGAAGTTTTAGTCTTATACTCTGCTCTTAATTCTTGTGATCCTGGGGACATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTTATTGGTCTTACTGCAGAAATTTTTATATGCAGACATCTCTGCCAAGAAACTGGTGGCTCATACTCTGTCGCATTGGATGAGTCTCACTTCAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCAATTGCAGACTCTGCCATGCCTAATTTAATCAAGATGGGTTTTCCACAAAGAGCAGCAGAGAGTTCCATTGCAATATGTTCATGTCACAAGGAAGCTAAAGTTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCAAGGGTTTGTGAGCTTCCCACAGAGTGTCGAATTTGTGGACTGACTCTTATCTCCTCACCCCATTTGGCTAGGTCGTATCATCATCTTTTTCCAATTATACCATTTGATGAAGTCTCTGATAAAGTATTTCATGACCCACGACACCAACTTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTGGCACACGTAACAGTCCAGGCATCCGTGTTTCTTGCCCAAAGTGCAAACAACACTTCTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTCAGGCATCCCAAATTAGCGACTTTTGACGAATGA

Protein sequence

MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLATFDE

Homology

[Close]

BLAST of Cmc09g0254481 vs. NCBI nr
Match: XP_008467294.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo])

HSP 1 Score: 882.9 bits (2280), Expect = 1.1e-252
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60
           MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420
           KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT
Sbjct: 361 KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420

Query: 421 FDE 424
           FDE
Sbjct: 421 FDE 423

[Close]

BLAST of Cmc09g0254481 vs. NCBI nr
Match: KAA0055121.1 (general transcription factor IIH subunit 2 [Cucumis melo var. makuwa] >TYK20738.1 general transcription factor IIH subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 880.2 bits (2273), Expect = 7.3e-252
Identity = 422/423 (99.76%), Postives = 422/423 (99.76%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60
           MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420
           KVCFGCQESLMNPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT
Sbjct: 361 KVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420

Query: 421 FDE 424
           FDE
Sbjct: 421 FDE 423

[Close]

BLAST of Cmc09g0254481 vs. NCBI nr
Match: XP_004143721.1 (general transcription factor IIH subunit 2 [Cucumis sativus] >XP_031741116.1 general transcription factor IIH subunit 2 [Cucumis sativus] >KGN50372.1 hypothetical protein Csa_000481 [Cucumis sativus])

HSP 1 Score: 859.0 bits (2218), Expect = 1.7e-245
Identity = 414/423 (97.87%), Postives = 416/423 (98.35%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60
           MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLL PIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHV+AFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDG A+CLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420
           KVCFGCQESLMNP T NSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PKLAT
Sbjct: 361 KVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLAT 420

Query: 421 FDE 424
            DE
Sbjct: 421 SDE 423

[Close]

BLAST of Cmc09g0254481 vs. NCBI nr
Match: XP_038874496.1 (general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 850.9 bits (2197), Expect = 4.7e-243
Identity = 410/424 (96.70%), Postives = 416/424 (98.11%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60
           MNNGENRRLNGEADEEDDDDDAN GLAAWERTYADDRSWEALQEDESGLL PIDNKAIYH
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLYIVIDFS+AATEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIVIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180
           FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVH +L
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGFL 180

Query: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300
           GSYS+ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG
Sbjct: 241 GSYSIALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKV HDPR+QL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVLHDPRNQL 360

Query: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420
           PKVCFGCQESLMNPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PK A
Sbjct: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TFDE 424
           T DE
Sbjct: 421 TSDE 424

[Close]

BLAST of Cmc09g0254481 vs. NCBI nr
Match: XP_022949453.1 (general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 general transcription factor IIH subunit 2 [Cucurbita pepo subsp. pepo] >KAG6607180.1 General transcription factor IIH subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 831.2 bits (2146), Expect = 3.9e-237
Identity = 398/424 (93.87%), Postives = 411/424 (96.93%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60
           MNNGENRRLNGEA+EEDDDDDAN G+AAWERTYADDRSWEALQEDESGLL PIDNKAI+H
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420
           PKVCFGCQE+  NPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PK A
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TFDE 424
           T D+
Sbjct: 421 TSDD 424

[Close]

BLAST of Cmc09g0254481 vs. ExPASy Swiss-Prot
Match: Q9ZVN9 (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 6.3e-190
Identity = 315/418 (75.36%), Postives = 356/418 (85.17%), Query Frame = 0


Query: 7   RRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHAQYRRRL 66
           R+ + +  EE+DD+DA G+  WER Y DDRSWE LQEDESGLL PIDN AIYHAQYRRRL
Sbjct: 5   RKRSNDEREEEDDEDAEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRL 64

Query: 67  RTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREFFDQNPL 126
           R LS+ A   RIQKGLIRYLYIVIDFS+AA EMDFRPSRMA++AKHVEAF+REFFDQNPL
Sbjct: 65  RMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPL 124

Query: 127 SQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYG 186
           SQIGLV+IK+GVAH LTDLGGSPE+H+KALMGKLE  GD+SLQN LELVH +LNQ+PSYG
Sbjct: 125 SQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYG 184

Query: 187 HREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVAL 246
           HREVL+LYSAL +CDPGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG YSVA+
Sbjct: 185 HREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAV 244

Query: 247 DESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPR 306
           DE H K+LLLEHAPPPPAIA+ A+ NLIKMGFPQRAAE S+AICSCHKE K+G GY CPR
Sbjct: 245 DEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPR 304

Query: 307 CKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV-SDKVFHDPRHQLPKVCFG 366
           CKARVC+LPTEC ICGLTL+SSPHLARSYHHLFPI PFDEV +    +D R +L K CFG
Sbjct: 305 CKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFG 364

Query: 367 CQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLATFDE 424
           CQ+SL+  G  N P   V+C KCK +FCLDCDIYIHESLHNCPGCES   PK  +  E
Sbjct: 365 CQQSLIGAG--NKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLME 420

[Close]

BLAST of Cmc09g0254481 vs. ExPASy Swiss-Prot
Match: Q2TBV5 (General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 2.8e-89
Identity = 164/405 (40.49%), Postives = 244/405 (60.25%), Query Frame = 0


Query: 19  DDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHAQYRRRLRTLSSLATTARI 78
           D++      WE  Y  +R+WE L+EDESG L       ++ A+ +R            ++
Sbjct: 2   DEEPERTKRWEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQV 61

Query: 79  QKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGV 138
           + G++R+LY+V+D S+   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   
Sbjct: 62  RLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKR 121

Query: 139 AHCLTDLGGSPESHVKALMGKLE--CSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSA 198
           A  LT+L G+P  H+ +L   ++  C G+ SL N L +    L  +P +  REVL+++S+
Sbjct: 122 AEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSS 181

Query: 199 LNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLL 258
           L +CDP +I + ++  K +KIR S+IGL+AE+ +C  L +ETGG+Y V LDESH+KELL 
Sbjct: 182 LTTCDPSNIYDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLT 241

Query: 259 EHAPPPPAIADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAKVG---GGYTCP 318
            H  PPPA ++S   +LI+MGFPQ          A+ S ++       + G   GGY CP
Sbjct: 242 HHVSPPPASSNSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCP 301

Query: 319 RCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFG 378
           +C+A+ CELP EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      H   + C+ 
Sbjct: 302 QCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EHNGERFCYA 361

Query: 379 CQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 411
           CQ  L +            C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 362 CQGELKDQHV-------YVCSVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of Cmc09g0254481 vs. ExPASy Swiss-Prot
Match: Q13888 (General transcription factor IIH subunit 2 OS=Homo sapiens OX=9606 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 2.8e-89
Identity = 166/405 (40.99%), Postives = 246/405 (60.74%), Query Frame = 0


Query: 19  DDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHAQYRRRLRTLSSLATTARI 78
           D++      WE  Y  +R+WE L+EDESG L       ++ A+ +R            ++
Sbjct: 2   DEEPERTKRWEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQV 61

Query: 79  QKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGV 138
           + G++R+LY+V+D S+   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   
Sbjct: 62  RLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKR 121

Query: 139 AHCLTDLGGSPESHVKALMGKLE--CSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSA 198
           A  LT+L G+P  H+ +L   ++  C G+ SL N L +    L  +P +  REVL+++S+
Sbjct: 122 AEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSS 181

Query: 199 LNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLL 258
           L +CDP +I + ++  K +KIR SVIGL+AE+ +C  L +ETGG+Y V LDESH+KELL 
Sbjct: 182 LTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLT 241

Query: 259 EHAPPPPAIADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAKVG---GGYTCP 318
            H  PPPA + S+  +LI+MGFPQ          A+ S ++       + G   GGY CP
Sbjct: 242 HHVSPPPA-SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCP 301

Query: 319 RCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFG 378
           +C+A+ CELP EC+ICGLTL+S+PHLARSYHHLFP+  F E+  + ++  R      C+G
Sbjct: 302 QCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYG 361

Query: 379 CQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 411
           CQ  L +            C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 362 CQGELKDQHV-------YVCAVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of Cmc09g0254481 vs. ExPASy Swiss-Prot
Match: Q6P1K8 (General transcription factor IIH subunit 2-like protein OS=Homo sapiens OX=9606 GN=GTF2H2C PE=1 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 3.7e-89
Identity = 166/405 (40.99%), Postives = 246/405 (60.74%), Query Frame = 0


Query: 19  DDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHAQYRRRLRTLSSLATTARI 78
           D++      WE  Y  +R+WE L+EDESG L       ++ A+ +R            ++
Sbjct: 2   DEEPERTKRWEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKR------VFEHHGQV 61

Query: 79  QKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTIKDGV 138
           + G++R+LY+V+D S+   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   
Sbjct: 62  RLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKR 121

Query: 139 AHCLTDLGGSPESHVKALMGKLE--CSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSA 198
           A  LT+L G+P  H+ +L   ++  C G+ SL N L +    L  +P +  REVL+++S+
Sbjct: 122 AEKLTELSGNPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSS 181

Query: 199 LNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLL 258
           L +CDP +I + ++  K +KIR SVIGL+AE+ +C  L +ETGG+Y V LDESH+KELL 
Sbjct: 182 LTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLT 241

Query: 259 EHAPPPPAIADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAKVG---GGYTCP 318
            H  PPPA + S+  +LI+MGFPQ          A+ S ++       + G   GGY CP
Sbjct: 242 HHLSPPPA-SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCP 301

Query: 319 RCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFG 378
           +C+A+ CELP EC+ICGLTL+S+PHLARSYHHLFP+  F E+  + ++  R      C+G
Sbjct: 302 QCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER-----FCYG 361

Query: 379 CQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 411
           CQ  L +            C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 362 CQGELKDQHV-------YVCAVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of Cmc09g0254481 vs. ExPASy Swiss-Prot
Match: O74995 (General transcription and DNA repair factor IIH subunit ssl1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssl1 PE=1 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.3e-89
Identity = 168/419 (40.10%), Postives = 241/419 (57.52%), Query Frame = 0


Query: 2   NNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHAQ 61
           +  E+ + NG         D N    WE  Y   RSW+ +QED  G L  +    I   +
Sbjct: 13  SESEDEQKNGRVKVRSRKTDDNEGYTWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGK 72

Query: 62  YRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREFF 121
            +R LR       T  +Q+G+IR++ +V+D S +  E DF   R  +  K+   FV EFF
Sbjct: 73  RKRLLR------DTTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFF 132

Query: 122 DQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQ 181
           +QNP+SQ+ ++ + DG+AH +TDL G+P+SH++ L    +CSG+ SLQN LE+  + L+ 
Sbjct: 133 EQNPISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMARASLSH 192

Query: 182 IPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGS 241
           I S+G REVL+++ ++ S DPGDI +T+       IR  ++GL AE+ IC+ +C +T  S
Sbjct: 193 IASHGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRVRIVGLAAEVAICKEICNKTNSS 252

Query: 242 ----YSVALDESHFKELLLEHA-PPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEA 301
               Y V + E HF+ELLLE   PP    A +   +L+ MGFP +  E   ++C+CH   
Sbjct: 253 TKNAYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACH-SI 312

Query: 302 KVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPR 361
              GG+ CPRCKA+VC LP EC  C L LI S HLARSYHHLFP+  + E+         
Sbjct: 313 PSRGGFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWSEIPWSANPKST 372

Query: 362 HQLPKVCFGCQ----ESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCE 412
           H     CF CQ    +  ++P   ++  +R +CP CK HFCLDCD++ HE LH C GC+
Sbjct: 373 H-----CFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 417

[Close]

BLAST of Cmc09g0254481 vs. ExPASy TrEMBL
Match: A0A1S3CUH8 (General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674 PE=3 SV=1)

HSP 1 Score: 882.9 bits (2280), Expect = 5.4e-253
Identity = 423/423 (100.00%), Postives = 423/423 (100.00%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60
           MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420
           KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT
Sbjct: 361 KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420

Query: 421 FDE 424
           FDE
Sbjct: 421 FDE 423

[Close]

BLAST of Cmc09g0254481 vs. ExPASy TrEMBL
Match: A0A5A7UNG8 (General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001400 PE=3 SV=1)

HSP 1 Score: 880.2 bits (2273), Expect = 3.5e-252
Identity = 422/423 (99.76%), Postives = 422/423 (99.76%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60
           MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420
           KVCFGCQESLMNPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT
Sbjct: 361 KVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420

Query: 421 FDE 424
           FDE
Sbjct: 421 FDE 423

[Close]

BLAST of Cmc09g0254481 vs. ExPASy TrEMBL
Match: A0A0A0KPM4 (General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169080 PE=3 SV=1)

HSP 1 Score: 859.0 bits (2218), Expect = 8.4e-246
Identity = 414/423 (97.87%), Postives = 416/423 (98.35%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHA 60
           MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLL PIDNKAIYHA
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHA 60

Query: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREF 120
           QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHV+AFVREF
Sbjct: 61  QYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREF 120

Query: 121 FDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180
           FDQNPLSQIGLVTIKDG A+CLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN
Sbjct: 121 FDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLN 180

Query: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240
           QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG
Sbjct: 181 QIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGG 240

Query: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300
           SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG
Sbjct: 241 SYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGG 300

Query: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360
           GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP
Sbjct: 301 GYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLP 360

Query: 361 KVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLAT 420
           KVCFGCQESLMNP T NSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PKLAT
Sbjct: 361 KVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLAT 420

Query: 421 FDE 424
            DE
Sbjct: 421 SDE 423

[Close]

BLAST of Cmc09g0254481 vs. ExPASy TrEMBL
Match: A0A6J1GC53 (General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111452792 PE=3 SV=1)

HSP 1 Score: 831.2 bits (2146), Expect = 1.9e-237
Identity = 398/424 (93.87%), Postives = 411/424 (96.93%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60
           MNNGENRRLNGEA+EEDDDDDAN G+AAWERTYADDRSWEALQEDESGLL PIDNKAI+H
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420
           PKVCFGCQE+  NPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PK A
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TFDE 424
           T D+
Sbjct: 421 TSDD 424

[Close]

BLAST of Cmc09g0254481 vs. ExPASy TrEMBL
Match: A0A6J1K980 (General transcription factor IIH subunit OS=Cucurbita maxima OX=3661 GN=LOC111493405 PE=3 SV=1)

HSP 1 Score: 828.9 bits (2140), Expect = 9.3e-237
Identity = 397/424 (93.63%), Postives = 410/424 (96.70%), Query Frame = 0


Query: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60
           MNNGENRRLNGEA+EEDDDDDAN G+AAWERTYADDRSWEALQEDESGLL PIDNKAI+H
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLY+VIDFS+AA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180
           FFDQNPLSQIGLVTIKDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV  YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300
           GSY VALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAKVG
Sbjct: 241 GSYLVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDK+FHDPRHQL
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420
           PKVCFGCQE+  NPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PK A
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TFDE 424
           T D+
Sbjct: 421 TSDD 424

[Close]

BLAST of Cmc09g0254481 vs. TAIR 10
Match: AT1G05055.1 (general transcription factor II H2 )

HSP 1 Score: 664.8 bits (1714), Expect = 4.5e-191
Identity = 315/418 (75.36%), Postives = 356/418 (85.17%), Query Frame = 0


Query: 7   RRLNGEADEEDDDDDANGLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYHAQYRRRL 66
           R+ + +  EE+DD+DA G+  WER Y DDRSWE LQEDESGLL PIDN AIYHAQYRRRL
Sbjct: 5   RKRSNDEREEEDDEDAEGIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRL 64

Query: 67  RTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVREFFDQNPL 126
           R LS+ A   RIQKGLIRYLYIVIDFS+AA EMDFRPSRMA++AKHVEAF+REFFDQNPL
Sbjct: 65  RMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPL 124

Query: 127 SQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYG 186
           SQIGLV+IK+GVAH LTDLGGSPE+H+KALMGKLE  GD+SLQN LELVH +LNQ+PSYG
Sbjct: 125 SQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYG 184

Query: 187 HREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVAL 246
           HREVL+LYSAL +CDPGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG YSVA+
Sbjct: 185 HREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAV 244

Query: 247 DESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPR 306
           DE H K+LLLEHAPPPPAIA+ A+ NLIKMGFPQRAAE S+AICSCHKE K+G GY CPR
Sbjct: 245 DEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPR 304

Query: 307 CKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV-SDKVFHDPRHQLPKVCFG 366
           CKARVC+LPTEC ICGLTL+SSPHLARSYHHLFPI PFDEV +    +D R +L K CFG
Sbjct: 305 CKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFG 364

Query: 367 CQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLATFDE 424
           CQ+SL+  G  N P   V+C KCK +FCLDCDIYIHESLHNCPGCES   PK  +  E
Sbjct: 365 CQQSLIGAG--NKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSVSLME 420

The following BLAST results are available for this feature:

BLAST of Cmc09g0254481 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467294.1	1.1e-252	100.00	PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo]	[more]
KAA0055121.1	7.3e-252	99.76	general transcription factor IIH subunit 2 [Cucumis melo var. makuwa] >TYK20738....	[more]
XP_004143721.1	1.7e-245	97.87	general transcription factor IIH subunit 2 [Cucumis sativus] >XP_031741116.1 gen...	[more]
XP_038874496.1	4.7e-243	96.70	general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida]	[more]
XP_022949453.1	3.9e-237	93.87	general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 ...	[more]

BLAST of Cmc09g0254481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVN9	6.3e-190	75.36	General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GT...	[more]
Q2TBV5	2.8e-89	40.49	General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 ...	[more]
Q13888	2.8e-89	40.99	General transcription factor IIH subunit 2 OS=Homo sapiens OX=9606 GN=GTF2H2 PE=...	[more]
Q6P1K8	3.7e-89	40.99	General transcription factor IIH subunit 2-like protein OS=Homo sapiens OX=9606 ...	[more]
O74995	6.3e-89	40.10	General transcription and DNA repair factor IIH subunit ssl1 OS=Schizosaccharomy...	[more]

BLAST of Cmc09g0254481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CUH8	5.4e-253	100.00	General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674...	[more]
A0A5A7UNG8	3.5e-252	99.76	General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KPM4	8.4e-246	97.87	General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169...	[more]
A0A6J1GC53	1.9e-237	93.87	General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1K980	9.3e-237	93.63	General transcription factor IIH subunit OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of Cmc09g0254481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05055.1	4.5e-191	75.36	general transcription factor II H2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004595	TFIIH C1-like domain	SMART	SM01047	C1_4_2	coord: 362..412 e-value: 2.6E-20 score: 83.5
IPR004595	TFIIH C1-like domain	PFAM	PF07975	C1_4	coord: 363..412 e-value: 1.4E-19 score: 70.0
IPR002035	von Willebrand factor, type A	SMART	SM00327	VWA_4	coord: 83..259 e-value: 1.3E-11 score: 54.6
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 85..224 score: 9.02013
IPR012170	TFIIH subunit Ssl1/p44	PIRSF	PIRSF015919	TFIIH_SSL1	coord: 1..413 e-value: 1.7E-161 score: 535.7
IPR012170	TFIIH subunit Ssl1/p44	TIGRFAM	TIGR00622	TIGR00622	coord: 301..412 e-value: 2.5E-37 score: 126.0
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 339..417 e-value: 2.6E-20 score: 74.2
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	3.40.50.410	von Willebrand factor, type A domain	coord: 79..264 e-value: 1.8E-71 score: 241.6
IPR036465	von Willebrand factor A-like domain superfamily	SUPERFAMILY	53300	vWA-like	coord: 80..248
IPR007198	Ssl1-like	PFAM	PF04056	Ssl1	coord: 89..279 e-value: 1.9E-85 score: 285.6
IPR007198	Ssl1-like	CDD	cd01453	vWA_transcription_factor_IIH_type	coord: 81..263 e-value: 7.14335E-103 score: 301.172
None	No IPR available	PIRSR	PIRSR015919-1	PIRSR015919-1	coord: 6..412 e-value: 1.5E-163 score: 542.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR12695	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2	coord: 17..410
None	No IPR available	SUPERFAMILY	57889	Cysteine-rich domain	coord: 336..411
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 385..405

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0254481.1	Cmc09g0254481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006281	DNA repair
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0008270	zinc ion binding