Cmc09g0252991 (gene) Melon (Charmono) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGATGTGATTGAAATGAAGGAAAATTAAAAAGAAAAAGAAAAGATCGTCGTAGAAAGGGAACAGCAACAGCACGGAATACCGAGAGCGAGTCCTGCTTATCTCAAACTCCCAACTTCAAAACTACTTTTCCCTACTAAACATTATACGAAATTTAAAAACAAAACAAAAGGGAAAAGAGAAAATAAGTAAGGAGGCCGTGGAATGTAGGTCCCACTCTCCACGTCAACGATCCGTGTCGTCAAACACAAAACTCAAATTCCAGCCCTGGGATCCTCACCCTTAGCTCTCTATCCCCAACCGTCCGATCTCCCCTGCCCTTCCTCCCGATCCCTTCCTCTCCCTATTTCCCCTTTTTAAATCCTTCCCTTTCCCCTTCTTCAATCGTCTTCTTCCCACCAAACCTACGGTGCTTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAATCACATCATCTAAGCCATCTCCTCTGCCACCATGGCTACCGACGACCAACTCAACAACCCACCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGGTACTTCAATTTCTCTTTCTTTCTATTTCTCGCTCTCTGCCATTTCTTTAATTTTCTTTTTAACTTTAATTTCCGTGAAATTTCTTTCCACAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACAAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACCCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGGCGTCCACCCAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCCCCACGCCCACGTGGCCGTCCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACTACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAATACCCCAAACCGGCCCCCACCTCTGCTTCTCCCGTCGCCGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCAGCCGTGGCCCCTGTTGGTTGTTGAACGGAACGAAACTAAAAACAGAGGATGAGAGAGAGAGAGAAATAGAAATTAGAGAGAGAGAGAGAGAGAAAGAAGATGATAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTCATTTTTTTCCCCTTCTTTCTTCTAATTTTAAAAAAATTTTAATTTTACTTCCTTTTTTTTTTTTTTTTTTTGTTTTTATTAATTATAATTATAATTATAATTATTATTATTAATGTGTATTACGTGGCGGGTTATGGTAGGGCTGTAATTCTGGGTGGGGGTTAGGAGATTGTAATTGCATGTAAGTTATTTTACTGGTTGTTAGGCCCTTTTTCCTTTTTCTTTTTCTTTTTTCCCTTCCCTTAATCTCTCCATTATTAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTTAGTTTTAATTTATGCGGCCACTTTAAGGGACTTCAAATCTTTTAGTTATTTTATTTTATTTTACTTTAATATCAAATTGCATAACCTTCTCGTGCAATGGGTAGAAATTGCTTTAATTATTTTAATT TGATGTGATTGAAATGAAGGAAAATTAAAAAGAAAAAGAAAAGATCGTCGTAGAAAGGGAACAGCAACAGCACGGAATACCGAGAGCGAGTCCTGCTTATCTCAAACTCCCAACTTCAAAACTACTTTTCCCTACTAAACATTATACGAAATTTAAAAACAAAACAAAAGGGAAAAGAGAAAATAAGTAAGGAGGCCGTGGAATGTAGGTCCCACTCTCCACGTCAACGATCCGTGTCGTCAAACACAAAACTCAAATTCCAGCCCTGGGATCCTCACCCTTAGCTCTCTATCCCCAACCGTCCGATCTCCCCTGCCCTTCCTCCCGATCCCTTCCTCTCCCTATTTCCCCTTTTTAAATCCTTCCCTTTCCCCTTCTTCAATCGTCTTCTTCCCACCAAACCTACGGTGCTTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAATCACATCATCTAAGCCATCTCCTCTGCCACCATGGCTACCGACGACCAACTCAACAACCCACCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACAAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACCCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGGCGTCCACCCAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCCCCACGCCCACGTGGCCGTCCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACTACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAATACCCCAAACCGGCCCCCACCTCTGCTTCTCCCGTCGCCGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCAGCCGTGGCCCCTGTTGGTTGTTGAACGGAACGAAACTAAAAACAGAGGATGAGAGAGAGAGAGAAATAGAAATTAGAGAGAGAGAGAGAGAGAAAGAAGATGATAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTCATTTTTTTCCCCTTCTTTCTTCTAATTTTAAAAAAATTTTAATTTTACTTCCTTTTTTTTTTTTTTTTTTTGTTTTTATTAATTATAATTATAATTATAATTATTATTATTAATGTGTATTACGTGGCGGGTTATGGTAGGGCTGTAATTCTGGGTGGGGGTTAGGAGATTGTAATTGCATGTAAGTTATTTTACTGGTTGTTAGGCCCTTTTTCCTTTTTCTTTTTCTTTTTTCCCTTCCCTTAATCTCTCCATTATTAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTTTAGTTTTAATTTATGCGGCCACTTTAAGGGACTTCAAATCTTTTAGTTATTTTATTTTATTTTACTTTAATATCAAATTGCATAACCTTCTCGTGCAATGGGTAGAAATTGCTTTAATTATTTTAATT ATGGCTACCGACGACCAACTCAACAACCCACCTCAACCACCTCCCCCTGCTCCCTCTCTCCCTCACTACCCCGAGATGATTATGGCAGCAATCGATTCTCTAAACGACAAAAACGGAGTAAGCAAATCGGCGATTACAAAGCAAATCGAGTCCACATACGGCGATCTACCCCCTGCTTTCACTACCCTTCTCACTCACCACTTAGACGTCATGAAGCAAACCGGGCAACTCCTCTTCGTCAAAAACAACTACATGAAGCCCGATCCCAACGCCCCACCTAAGCGTGGCAGAGGGCGTCCACCCAAGCCCAAAGTCCCTCTCCCACCAGGCACCGTCGTCTCTCCCCCACGCCCACGTGGCCGTCCTCCTAAACCCAAAGATCCATTCGCTCCCATTTCACAACCCAAGAAGAAAACTACCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAATACCCCAAACCGGCCCCCACCTCTGCTTCTCCCGTCGCCGGTCCTCCCAGAGGCAGAGGACGGCCACCGAAGGTAAAGCCAGCCGTGGCCCCTGTTGGTTGTTGA MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSASPVAGPPRGRGRPPKVKPAVAPVGC Homology
BLAST of Cmc09g0252991 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related protein A [Cucumis melo var. makuwa] >TYK30498.1 HMG-Y-related protein A [Cucumis melo var. makuwa]) HSP 1 Score: 365.2 bits (936), Expect = 3.5e-97 Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of Cmc09g0252991 vs. NCBI nr
Match: XP_004150116.1 (HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_008586 [Cucumis sativus]) HSP 1 Score: 364.8 bits (935), Expect = 4.5e-97 Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of Cmc09g0252991 vs. NCBI nr
Match: XP_038906720.1 (HMG-Y-related protein A-like [Benincasa hispida]) HSP 1 Score: 354.4 bits (908), Expect = 6.1e-94 Identity = 181/186 (97.31%), Postives = 183/186 (98.39%), Query Frame = 0
BLAST of Cmc09g0252991 vs. NCBI nr
Match: XP_022938491.1 (HMG-Y-related protein A [Cucurbita moschata] >KAG6579257.1 HMG-Y-related protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016774.1 HMG-Y-related protein A [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 344.7 bits (883), Expect = 4.8e-91 Identity = 172/186 (92.47%), Postives = 180/186 (96.77%), Query Frame = 0
BLAST of Cmc09g0252991 vs. NCBI nr
Match: XP_023550058.1 (HMG-Y-related protein A [Cucurbita pepo subsp. pepo]) HSP 1 Score: 344.7 bits (883), Expect = 4.8e-91 Identity = 172/186 (92.47%), Postives = 180/186 (96.77%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 4.5e-47 Identity = 112/184 (60.87%), Postives = 131/184 (71.20%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 2.2e-46 Identity = 115/189 (60.85%), Postives = 133/189 (70.37%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 2.6e-39 Identity = 97/153 (63.40%), Postives = 114/153 (74.51%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 4.3e-34 Identity = 101/197 (51.27%), Postives = 124/197 (62.94%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 5.5e-05 Identity = 59/180 (32.78%), Postives = 85/180 (47.22%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy TrEMBL
Match: A0A5D3E3W3 (HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00410 PE=4 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97 Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy TrEMBL
Match: A0A1S3CSD8 (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1) HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97 Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy TrEMBL
Match: A0A0A0KPG4 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1) HSP 1 Score: 364.8 bits (935), Expect = 2.2e-97 Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy TrEMBL
Match: A0A6J1FDA7 (HMG-Y-related protein A OS=Cucurbita moschata OX=3662 GN=LOC111444711 PE=4 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 2.3e-91 Identity = 172/186 (92.47%), Postives = 180/186 (96.77%), Query Frame = 0
BLAST of Cmc09g0252991 vs. ExPASy TrEMBL
Match: A0A6J1I8X7 (HMG-Y-related protein A-like OS=Cucurbita maxima OX=3661 GN=LOC111472076 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90 Identity = 171/186 (91.94%), Postives = 179/186 (96.24%), Query Frame = 0
BLAST of Cmc09g0252991 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A ) HSP 1 Score: 186.8 bits (473), Expect = 1.6e-47 Identity = 115/189 (60.85%), Postives = 133/189 (70.37%), Query Frame = 0
BLAST of Cmc09g0252991 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 ) HSP 1 Score: 62.0 bits (149), Expect = 5.8e-10 Identity = 73/209 (34.93%), Postives = 88/209 (42.11%), Query Frame = 0
BLAST of Cmc09g0252991 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein ) HSP 1 Score: 61.2 bits (147), Expect = 9.9e-10 Identity = 71/203 (34.98%), Postives = 92/203 (45.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|