Cmc09g0251741 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0251741
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr09: 17789738 .. 17790490 (-)
RNA-Seq Expression	Cmc09g0251741
Synteny	Cmc09g0251741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCATCACCCATCTTCCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCATTTTTCAAAGTACGCCACCTTCATCCCCACCACCAAGCAGTGTTCAGCAGAAATGACAGCTCAATTATTCTTTAAGCATGTTGTTAAGTTGTGGGGAGTCCCGACAAGTATAGTGAGTGACAGGGATGGTAGATTCATTGGCTCCTTCTGGACGGAATTATTTTCCTTCTTGGGGACAAGTCTGAACATATCCTCAAGCTACCATCCCCAAACTAACGGCCAGACTGAGCGATTCAACTGCATGCTCGAGGAATATTTGCGCCATTTTGTAAACGCAAGGCAAAAGAACTGGGTCCAGCTGTTGGACGTAGCCCAATTCTGTTTCAACGCTCAGACAAGTTCATCTATAGGGAGAAGCCCATTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACCTTGTTGATCATCCCTTTGCAGGGAAGAACCCTCAAGCCCTCAATTTCACGAAGGAGTGGAAACAGACAAACGACATCGCCCGAGCGTACTTAGAAAAAGCATCGAAGCGGATGAAGAAGTGGGCAGATAAGAAGCGACGACCTCTTGAGTTTCGAGCGGGAGACCAGGTACTCATCAAACTACGACCAGAGCAAGTCAGGTTTCGAGGACGCAAAGACCAACGTCTCATCAGGAAGTACGAAGGACCAGTTCAAGTGCTGAAAAAAGGTAGGGAATACTTCTTATAG

mRNA sequence

ATGGACTTCATCACCCATCTTCCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCATTTTTCAAAGTACGCCACCTTCATCCCCACCACCAAGCAGTGTTCAGCAGAAATGACAGCTCAATTATTCTTTAAGCATGTTGTTAAGTTGTGGGGAGTCCCGACAAGTATAGTGAGTGACAGGGATGGTAGATTCATTGGCTCCTTCTGGACGGAATTATTTTCCTTCTTGGGGACAAGTCTGAACATATCCTCAAGCTACCATCCCCAAACTAACGGCCAGACTGAGCGATTCAACTGCATGCTCGAGGAATATTTGCGCCATTTTGTAAACGCAAGGCAAAAGAACTGGGTCCAGCTGTTGGACGTAGCCCAATTCTGTTTCAACGCTCAGACAAGTTCATCTATAGGGAGAAGCCCATTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACCTTGTTGATCATCCCTTTGCAGGGAAGAACCCTCAAGCCCTCAATTTCACGAAGGAGTGGAAACAGACAAACGACATCGCCCGAGCGTACTTAGAAAAAGCATCGAAGCGGATGAAGAAGTGGGCAGATAAGAAGCGACGACCTCTTGAGTTTCGAGCGGGAGACCAGGTACTCATCAAACTACGACCAGAGCAAGTCAGGTTTCGAGGACGCAAAGACCAACGTCTCATCAGGAAGTACGAAGGACCAGTTCAAGTGCTGAAAAAAGGTAGGGAATACTTCTTATAG

Coding sequence (CDS)

ATGGACTTCATCACCCATCTTCCTAAGGTAGGCGACTTTGAAGCCATCTTAGTCATCATTGATCATTTTTCAAAGTACGCCACCTTCATCCCCACCACCAAGCAGTGTTCAGCAGAAATGACAGCTCAATTATTCTTTAAGCATGTTGTTAAGTTGTGGGGAGTCCCGACAAGTATAGTGAGTGACAGGGATGGTAGATTCATTGGCTCCTTCTGGACGGAATTATTTTCCTTCTTGGGGACAAGTCTGAACATATCCTCAAGCTACCATCCCCAAACTAACGGCCAGACTGAGCGATTCAACTGCATGCTCGAGGAATATTTGCGCCATTTTGTAAACGCAAGGCAAAAGAACTGGGTCCAGCTGTTGGACGTAGCCCAATTCTGTTTCAACGCTCAGACAAGTTCATCTATAGGGAGAAGCCCATTTGAGATTGTTTCTGGGAGGCAACCAGTACTGCCACACCTTGTTGATCATCCCTTTGCAGGGAAGAACCCTCAAGCCCTCAATTTCACGAAGGAGTGGAAACAGACAAACGACATCGCCCGAGCGTACTTAGAAAAAGCATCGAAGCGGATGAAGAAGTGGGCAGATAAGAAGCGACGACCTCTTGAGTTTCGAGCGGGAGACCAGGTACTCATCAAACTACGACCAGAGCAAGTCAGGTTTCGAGGACGCAAAGACCAACGTCTCATCAGGAAGTACGAAGGACCAGTTCAAGTGCTGAAAAAAGGTAGGGAATACTTCTTATAG

Protein sequence

MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIVSDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWVQLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQVLKKGREYFL

Homology

[Close]

BLAST of Cmc09g0251741 vs. NCBI nr
Match: KAA0067594.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 499.6 bits (1285), Expect = 1.6e-137
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 612 MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 671

Query: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV
Sbjct: 672 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 731

Query: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
           QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND
Sbjct: 732 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 791

Query: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
           IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ
Sbjct: 792 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 851

Query: 241 VLKK 245
           VLKK
Sbjct: 852 VLKK 855

[Close]

BLAST of Cmc09g0251741 vs. NCBI nr
Match: TYJ97166.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 499.6 bits (1285), Expect = 1.6e-137
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60

Query: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV
Sbjct: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120

Query: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
           QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND
Sbjct: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180

Query: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
           IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ
Sbjct: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240

Query: 241 VLKK 245
           VLKK
Sbjct: 241 VLKK 244

[Close]

BLAST of Cmc09g0251741 vs. NCBI nr
Match: TYK01597.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 490.7 bits (1262), Expect = 7.3e-135
Identity = 239/244 (97.95%), Postives = 242/244 (99.18%), Query Frame = 0


Query: 1    MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 1206 MDFITHLPKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 1265

Query: 61   SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
            SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQT+GQTERFNCMLEEYLRHFVNARQKNWV
Sbjct: 1266 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNCMLEEYLRHFVNARQKNWV 1325

Query: 121  QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
            QLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND
Sbjct: 1326 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 1385

Query: 181  IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
            IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRP+QVRFRGRKDQRL+RKYEGPVQ
Sbjct: 1386 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPKQVRFRGRKDQRLVRKYEGPVQ 1445

Query: 241  VLKK 245
            VLKK
Sbjct: 1446 VLKK 1449

[Close]

BLAST of Cmc09g0251741 vs. NCBI nr
Match: KAA0057282.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 485.7 bits (1249), Expect = 2.4e-133
Identity = 237/244 (97.13%), Postives = 240/244 (98.36%), Query Frame = 0


Query: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 44  MDFITHLPKVGDFEAILVIIDSFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 103

Query: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQT+GQTERFNCMLEEYLRHFVNARQKNWV
Sbjct: 104 SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNCMLEEYLRHFVNARQKNWV 163

Query: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
           QLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPF GKNPQALNFTKEWKQTND
Sbjct: 164 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFTGKNPQALNFTKEWKQTND 223

Query: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
           IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPVQ
Sbjct: 224 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVQ 283

Query: 241 VLKK 245
           VLKK
Sbjct: 284 VLKK 287

[Close]

BLAST of Cmc09g0251741 vs. NCBI nr
Match: KAA0061354.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK14707.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 482.6 bits (1241), Expect = 2.0e-132
Identity = 235/244 (96.31%), Postives = 240/244 (98.36%), Query Frame = 0


Query: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKH VKLWGV TSIV
Sbjct: 44  MDFITHLPKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHAVKLWGVLTSIV 103

Query: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQT+GQT+RFNCMLEEYLRHFVNARQKNWV
Sbjct: 104 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTKRFNCMLEEYLRHFVNARQKNWV 163

Query: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
           QLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND
Sbjct: 164 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 223

Query: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
           IARAYLEKASKRMKKWADKKRRPLEF+AGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+
Sbjct: 224 IARAYLEKASKRMKKWADKKRRPLEFQAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVE 283

Query: 241 VLKK 245
           VLKK
Sbjct: 284 VLKK 287

[Close]

BLAST of Cmc09g0251741 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 80/245 (32.65%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 1    MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
            +D D  F    W +        +  S  Y PQT+GQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
              + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q   
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQ 1168

Query: 181  IARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPV 240
              + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP 
Sbjct: 1169 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFL---HKSNKLAPSFAGPF 1227

Query: 241  QVLKK 245
             VL+K
Sbjct: 1229 YVLQK 1227

[Close]

BLAST of Cmc09g0251741 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 80/245 (32.65%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 1    MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
            +D D  F    W +        +  S  Y PQT+GQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
              + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q   
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQ 1168

Query: 181  IARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPV 240
              + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP 
Sbjct: 1169 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFL---HKSNKLAPSFAGPF 1227

Query: 241  QVLKK 245
             VL+K
Sbjct: 1229 YVLQK 1227

[Close]

BLAST of Cmc09g0251741 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 80/245 (32.65%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 1    MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
            +D D  F    W +        +  S  Y PQT+GQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
              + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q   
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQ 1168

Query: 181  IARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPV 240
              + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP 
Sbjct: 1169 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFL---HKSNKLAPSFAGPF 1227

Query: 241  QVLKK 245
             VL+K
Sbjct: 1229 YVLQK 1227

[Close]

BLAST of Cmc09g0251741 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 80/245 (32.65%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 1    MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
            +D D  F    W +        +  S  Y PQT+GQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
              + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q   
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQ 1168

Query: 181  IARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPV 240
              + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP 
Sbjct: 1169 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFL---HKSNKLAPSFAGPF 1227

Query: 241  QVLKK 245
             VL+K
Sbjct: 1229 YVLQK 1227

[Close]

BLAST of Cmc09g0251741 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-28
Identity = 80/245 (32.65%), Postives = 122/245 (49.80%), Query Frame = 0


Query: 1    MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFIT LP+   + A+ V++D FSK A  +P TK  +AE TA++F + V+  +G P  I+
Sbjct: 989  MDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEII 1048

Query: 61   SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
            +D D  F    W +        +  S  Y PQT+GQTER N  +E+ LR   +     WV
Sbjct: 1049 ADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWV 1108

Query: 121  QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
              + + Q  +N    S+   +PFEIV    P L  L    F+ K  +    ++E  Q   
Sbjct: 1109 DHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTDEN---SQETIQVFQ 1168

Query: 181  IARAYLEKASKRMKKWADKKRRPL-EFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPV 240
              + +L   + +MKK+ D K + + EF+ GD V++K           K  +L   + GP 
Sbjct: 1169 TVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFL---HKSNKLAPSFAGPF 1227

Query: 241  QVLKK 245
             VL+K
Sbjct: 1229 YVLQK 1227

[Close]

BLAST of Cmc09g0251741 vs. ExPASy TrEMBL
Match: A0A5A7VJQ9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00600 PE=4 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 7.6e-138
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 612 MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 671

Query: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV
Sbjct: 672 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 731

Query: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
           QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND
Sbjct: 732 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 791

Query: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
           IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ
Sbjct: 792 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 851

Query: 241 VLKK 245
           VLKK
Sbjct: 852 VLKK 855

[Close]

BLAST of Cmc09g0251741 vs. ExPASy TrEMBL
Match: A0A5D3BDU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00440 PE=4 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 7.6e-138
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60

Query: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV
Sbjct: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120

Query: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
           QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND
Sbjct: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180

Query: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
           IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ
Sbjct: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240

Query: 241 VLKK 245
           VLKK
Sbjct: 241 VLKK 244

[Close]

BLAST of Cmc09g0251741 vs. ExPASy TrEMBL
Match: A0A5D3BQE4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001890 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 3.5e-135
Identity = 239/244 (97.95%), Postives = 242/244 (99.18%), Query Frame = 0


Query: 1    MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
            MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 1206 MDFITHLPKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 1265

Query: 61   SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
            SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQT+GQTERFNCMLEEYLRHFVNARQKNWV
Sbjct: 1266 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTERFNCMLEEYLRHFVNARQKNWV 1325

Query: 121  QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
            QLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND
Sbjct: 1326 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 1385

Query: 181  IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
            IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRP+QVRFRGRKDQRL+RKYEGPVQ
Sbjct: 1386 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPKQVRFRGRKDQRLVRKYEGPVQ 1445

Query: 241  VLKK 245
            VLKK
Sbjct: 1446 VLKK 1449

[Close]

BLAST of Cmc09g0251741 vs. ExPASy TrEMBL
Match: A0A5A7UN48 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001230 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.1e-133
Identity = 237/244 (97.13%), Postives = 240/244 (98.36%), Query Frame = 0


Query: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV
Sbjct: 44  MDFITHLPKVGDFEAILVIIDSFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 103

Query: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWT+LFSFL TSLNISSSYHPQT+GQTERFNCMLEEYLRHFVNARQKNWV
Sbjct: 104 SDRDGRFIGSFWTKLFSFLRTSLNISSSYHPQTDGQTERFNCMLEEYLRHFVNARQKNWV 163

Query: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
           QLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPF GKNPQALNFTKEWKQTND
Sbjct: 164 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFTGKNPQALNFTKEWKQTND 223

Query: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
           IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPVQ
Sbjct: 224 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVQ 283

Query: 241 VLKK 245
           VLKK
Sbjct: 284 VLKK 287

[Close]

BLAST of Cmc09g0251741 vs. ExPASy TrEMBL
Match: A0A5D3CS04 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00360 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 9.7e-133
Identity = 235/244 (96.31%), Postives = 240/244 (98.36%), Query Frame = 0


Query: 1   MDFITHLPKVGDFEAILVIIDHFSKYATFIPTTKQCSAEMTAQLFFKHVVKLWGVPTSIV 60
           MDFITHLPKVGDFEAILVIID FSKYATFIPTTKQCSAEMTAQLFFKH VKLWGV TSIV
Sbjct: 44  MDFITHLPKVGDFEAILVIIDRFSKYATFIPTTKQCSAEMTAQLFFKHAVKLWGVLTSIV 103

Query: 61  SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTNGQTERFNCMLEEYLRHFVNARQKNWV 120
           SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQT+GQT+RFNCMLEEYLRHFVNARQKNWV
Sbjct: 104 SDRDGRFIGSFWTELFSFLGTSLNISSSYHPQTDGQTKRFNCMLEEYLRHFVNARQKNWV 163

Query: 121 QLLDVAQFCFNAQTSSSIGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 180
           QLLDVAQFCFNAQTSSS GRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND
Sbjct: 164 QLLDVAQFCFNAQTSSSTGRSPFEIVSGRQPVLPHLVDHPFAGKNPQALNFTKEWKQTND 223

Query: 181 IARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGRKDQRLIRKYEGPVQ 240
           IARAYLEKASKRMKKWADKKRRPLEF+AGDQVLIKLRPEQVRFRGRKDQRL+RKYEGPV+
Sbjct: 224 IARAYLEKASKRMKKWADKKRRPLEFQAGDQVLIKLRPEQVRFRGRKDQRLVRKYEGPVE 283

Query: 241 VLKK 245
           VLKK
Sbjct: 284 VLKK 287

The following BLAST results are available for this feature:

BLAST of Cmc09g0251741 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067594.1	1.6e-137	100.00	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYJ97166.1	1.6e-137	100.00	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01597.1	7.3e-135	97.95	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0057282.1	2.4e-133	97.13	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0061354.1	2.0e-132	96.31	reverse transcriptase [Cucumis melo var. makuwa] >TYK14707.1 reverse transcripta...	[more]

BLAST of Cmc09g0251741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	2.1e-28	32.65	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	2.1e-28	32.65	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.1e-28	32.65	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	2.1e-28	32.65	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	2.1e-28	32.65	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc09g0251741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJQ9	7.6e-138	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A5D3BDU8	7.6e-138	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17...	[more]
A0A5D3BQE4	3.5e-135	97.95	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7UN48	1.1e-133	97.13	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]
A0A5D3CS04	9.7e-133	96.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69...	[more]

BLAST of Cmc09g0251741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..192 e-value: 7.0E-43 score: 148.2
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 3..235
None	No IPR available	PANTHER	PTHR46148:SF35	ZINC FINGER, CCHC-TYPE-RELATED	coord: 3..235
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..150 score: 20.732269
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0251741.1	Cmc09g0251741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity