Cmc09g0251501 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0251501
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr09: 17558111 .. 17558764 (-)
RNA-Seq Expression	Cmc09g0251501
Synteny	Cmc09g0251501

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGACAAATTCTTTTGTGGTGACTGTCAAGTTGGAAAGCAAACCAAAACTTCCCACAGAAGGCTAAAGGAATGTTATACAATCATAGTACTTCAACTCCTACATCTTGACTTTATGGGTCCCATGCAAACTGAAAGTTTGGGGGGAAAGAAGTATGTGTTAGTTGTTGTGGATGACTACTCCAGATTCACCTGGGTTCGGTTCTTAAAAGGAAAATCAGATACTGTTAAACTATGTATCAGTCTATGTTTGAACTTGCTACCTGAAAAGGGGCAAAAGATAATCAGGATCCGTAGTGATCATGGGAAGGAATTTGATAATGAAGATCTAAATAACTTCTGTCAGACTGAAGGAATTCATTATGAATTTGCTGCTCTCATAACTCCTCAACAAAATGGAGTAGTTGAACGGAAGAACAGAACGTTACAAGAAATGACTCGAGTTATGATACATGCCAAAAATTTGCCTTTGAATTTTTGGGCAGAAGCTGTAAACACAGCATGTCATATTCATAACAGGATTACTACACGATCTGGTACGACAACTACATTGTATGAATTATGGAAGGGAAGGAAACCAAATGTTAAGTATTTTCATATTTTTGGAAGTACTTGTTACATTTTAGCCGATAGAGAGTATCATCGGAAGTGA

mRNA sequence

ATGAATGACAAATTCTTTTGTGGTGACTGTCAAGTTGGAAAGCAAACCAAAACTTCCCACAGAAGGCTAAAGGAATGTTATACAATCATAGTACTTCAACTCCTACATCTTGACTTTATGGGTCCCATGCAAACTGAAAGTTTGGGGGGAAAGAAGTATGTGTTAGTTGTTGTGGATGACTACTCCAGATTCACCTGGGTTCGGTTCTTAAAAGGAAAATCAGATACTGTTAAACTATGTATCAGTCTATGTTTGAACTTGCTACCTGAAAAGGGGCAAAAGATAATCAGGATCCGTAGTGATCATGGGAAGGAATTTGATAATGAAGATCTAAATAACTTCTGTCAGACTGAAGGAATTCATTATGAATTTGCTGCTCTCATAACTCCTCAACAAAATGGAGTAGTTGAACGGAAGAACAGAACGTTACAAGAAATGACTCGAGTTATGATACATGCCAAAAATTTGCCTTTGAATTTTTGGGCAGAAGCTGTAAACACAGCATGTCATATTCATAACAGGATTACTACACGATCTGGTACGACAACTACATTGTATGAATTATGGAAGGGAAGGAAACCAAATGTTAAGTATTTTCATATTTTTGGAAGTACTTGTTACATTTTAGCCGATAGAGAGTATCATCGGAAGTGA

Coding sequence (CDS)

ATGAATGACAAATTCTTTTGTGGTGACTGTCAAGTTGGAAAGCAAACCAAAACTTCCCACAGAAGGCTAAAGGAATGTTATACAATCATAGTACTTCAACTCCTACATCTTGACTTTATGGGTCCCATGCAAACTGAAAGTTTGGGGGGAAAGAAGTATGTGTTAGTTGTTGTGGATGACTACTCCAGATTCACCTGGGTTCGGTTCTTAAAAGGAAAATCAGATACTGTTAAACTATGTATCAGTCTATGTTTGAACTTGCTACCTGAAAAGGGGCAAAAGATAATCAGGATCCGTAGTGATCATGGGAAGGAATTTGATAATGAAGATCTAAATAACTTCTGTCAGACTGAAGGAATTCATTATGAATTTGCTGCTCTCATAACTCCTCAACAAAATGGAGTAGTTGAACGGAAGAACAGAACGTTACAAGAAATGACTCGAGTTATGATACATGCCAAAAATTTGCCTTTGAATTTTTGGGCAGAAGCTGTAAACACAGCATGTCATATTCATAACAGGATTACTACACGATCTGGTACGACAACTACATTGTATGAATTATGGAAGGGAAGGAAACCAAATGTTAAGTATTTTCATATTTTTGGAAGTACTTGTTACATTTTAGCCGATAGAGAGTATCATCGGAAGTGA

Protein sequence

MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHRK

Homology

[Close]

BLAST of Cmc09g0251501 vs. NCBI nr
Match: KAA0036855.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95919.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 194/217 (89.40%), Postives = 201/217 (92.63%), Query Frame = 0


Query: 1   MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDD 60
           +N KFFCG+CQVGKQTKTSHRRLKECYTI VL+LLHL+ MGPMQTESLGGKKYVLVVVDD
Sbjct: 279 INGKFFCGNCQVGKQTKTSHRRLKECYTISVLELLHLNLMGPMQTESLGGKKYVLVVVDD 338

Query: 61  YSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 120
           YS+FTWVRFLK K DTVKLCISLCLNL  EKGQKIIRIRSDHGKEFDNEDLNN CQTEGI
Sbjct: 339 YSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIRSDHGKEFDNEDLNNLCQTEGI 398

Query: 121 HYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSG 180
           H+EFAA ITPQQNGVVERKNR LQEM RVMIHAKN PLNFWAE VNTACHIH R+TTR G
Sbjct: 399 HHEFAAPITPQQNGVVERKNRMLQEMARVMIHAKNFPLNFWAEVVNTACHIHKRVTTRFG 458

Query: 181 TTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHRK 218
           TT TLYELWKGRKPNVKYFHIFGSTCYILADREYHRK
Sbjct: 459 TTITLYELWKGRKPNVKYFHIFGSTCYILADREYHRK 495

[Close]

BLAST of Cmc09g0251501 vs. NCBI nr
Match: KAA0054435.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 370.5 bits (950), Expect = 9.6e-99
Identity = 176/203 (86.70%), Postives = 186/203 (91.63%), Query Frame = 0


Query: 1   MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDD 60
           +N KFFCGDCQVGKQTK+SH +LKECYTI VL+LLHLD MGPMQTESLGGKKYVLVVVDD
Sbjct: 429 INHKFFCGDCQVGKQTKSSHIKLKECYTIRVLELLHLDLMGPMQTESLGGKKYVLVVVDD 488

Query: 61  YSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 120
           YSRFTWV FLKGKSDT KLCISLCLNL  EKGQKIIRIRSDH KEFDNEDLNNFCQ EGI
Sbjct: 489 YSRFTWVEFLKGKSDTGKLCISLCLNLQHEKGQKIIRIRSDHEKEFDNEDLNNFCQIEGI 548

Query: 121 HYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSG 180
           H+E AA ITPQQNGVVERKNRTLQEM RVMIHAKNLPLNFWAEAVNTACHIHNR+TTRSG
Sbjct: 549 HHELAAPITPQQNGVVERKNRTLQEMARVMIHAKNLPLNFWAEAVNTACHIHNRVTTRSG 608

Query: 181 TTTTLYELWKGRKPNV-KYFHIF 203
           TT TLYELWKGRKPN+ + + +F
Sbjct: 609 TTVTLYELWKGRKPNINRVYRVF 631

[Close]

BLAST of Cmc09g0251501 vs. NCBI nr
Match: KAA0067564.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ97192.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 6.0e-93
Identity = 167/175 (95.43%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 42  PMQTESLGGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSD 101
           P + +  GGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRI SD
Sbjct: 462 PCKLKVWGGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRICSD 521

Query: 102 HGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFW 161
           HGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFW
Sbjct: 522 HGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFW 581

Query: 162 AEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHR 217
           AEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGST YILADREYHR
Sbjct: 582 AEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGSTYYILADREYHR 636

[Close]

BLAST of Cmc09g0251501 vs. NCBI nr
Match: TYK26041.1 (gag/pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 328.2 bits (840), Expect = 5.5e-86
Identity = 164/217 (75.58%), Postives = 171/217 (78.80%), Query Frame = 0


Query: 1   MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDD 60
           +N KFFCGDC+VGKQTK SHRRLKECYTI VL+LLHLD +GPM+TESLG KKYVLVVVDD
Sbjct: 311 INGKFFCGDCRVGKQTKISHRRLKECYTIRVLELLHLDLIGPMKTESLGRKKYVLVVVDD 370

Query: 61  YSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 120
           YSRFT VRFLKGKSDTVKLCISL LNL  EKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI
Sbjct: 371 YSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 430

Query: 121 HYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSG 180
           H+EF A ITPQQNGVVERKNRT                                +TTRSG
Sbjct: 431 HHEFVAPITPQQNGVVERKNRT--------------------------------VTTRSG 490

Query: 181 TTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHRK 218
           TT  LYELWKGRKPNVKYFHIFGSTCYILADR YHRK
Sbjct: 491 TTIALYELWKGRKPNVKYFHIFGSTCYILADRGYHRK 495

[Close]

BLAST of Cmc09g0251501 vs. NCBI nr
Match: KAA0054354.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12392.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 322.4 bits (825), Expect = 3.0e-84
Identity = 153/217 (70.51%), Postives = 176/217 (81.11%), Query Frame = 0


Query: 1   MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDD 60
           +N  FFCG         ++H+  K CYT  VL+LLH+D M PM+TES GGK+YVLVVV D
Sbjct: 39  VNGNFFCGG--------STHKSWKGCYTNRVLELLHMDLMRPMKTESHGGKRYVLVVVVD 98

Query: 61  YSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 120
           YSR+TWV FL+GK+DTV++C +LCL L  EKG+KI RIRSDHGKEFDNE  N+FC  EGI
Sbjct: 99  YSRYTWVCFLQGKTDTVEICKNLCLKLQREKGKKITRIRSDHGKEFDNEGFNSFCLLEGI 158

Query: 121 HYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSG 180
            +EF+A ITPQQNGVVERKNRTLQEM  VMIHAKNLP+ FWAEAVN ACHIHNR+T R+G
Sbjct: 159 QHEFSAPITPQQNGVVERKNRTLQEMACVMIHAKNLPMCFWAEAVNIACHIHNRVTIRTG 218

Query: 181 TTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHRK 218
            T TLYELWK RKPNVKYFH+FGSTCYILADREY +K
Sbjct: 219 MTVTLYELWKERKPNVKYFHVFGSTCYILADREYRQK 247

[Close]

BLAST of Cmc09g0251501 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-32
Identity = 72/211 (34.12%), Postives = 109/211 (51.66%), Query Frame = 0


Query: 7   CGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDDYSRFTW 66
           C  C  GKQ + S +   E   + +L L++ D  GPM+ ES+GG KY +  +DD SR  W
Sbjct: 457 CDYCLFGKQHRVSFQTSSE-RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLW 516

Query: 67  VRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIHYEFAA 126
           V  LK K    ++       +  E G+K+ R+RSD+G E+ + +   +C + GI +E   
Sbjct: 517 VYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTV 576

Query: 127 LITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSGTTTTLY 186
             TPQ NGV ER NRT+ E  R M+    LP +FW EAV TAC++ NR  +         
Sbjct: 577 PGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPE 636

Query: 187 ELWKGRKPNVKYFHIFGSTCYILADREYHRK 218
            +W  ++ +  +  +FG   +    +E   K
Sbjct: 637 RVWTNKEVSYSHLKVFGCRAFAHVPKEQRTK 666

[Close]

BLAST of Cmc09g0251501 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 66/205 (32.20%), Postives = 108/205 (52.68%), Query Frame = 0


Query: 7   CGDCQVGKQTKTSHRRLKE-CYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDDYSRFT 66
           C  C  GKQ +   ++LK+  +    L ++H D  GP+   +L  K Y ++ VD ++ + 
Sbjct: 455 CEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYC 514

Query: 67  WVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIHYEFA 126
               +K KSD   +              K++ +  D+G+E+ + ++  FC  +GI Y   
Sbjct: 515 VTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLT 574

Query: 127 ALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRS--GTTT 186
              TPQ NGV ER  RT+ E  R M+    L  +FW EAV TA ++ NRI +R+   ++ 
Sbjct: 575 VPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSK 634

Query: 187 TLYELWKGRKPNVKYFHIFGSTCYI 209
           T YE+W  +KP +K+  +FG+T Y+
Sbjct: 635 TPYEMWHNKKPYLKHLRVFGATVYV 659

[Close]

BLAST of Cmc09g0251501 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-16
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 0


Query: 7   CGDCQVGKQTKTSH---RRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDDYSR 66
           C DC +GK TK  H    RLK   +    Q LH D  GP+         Y +   D+ +R
Sbjct: 633 CPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTR 692

Query: 67  FTWVRFL--KGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIH 126
           F WV  L  + +   + +  S+   +  +   +++ I+ D G E+ N+ L+ F    GI 
Sbjct: 693 FQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGIT 752

Query: 127 YEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITT 178
             +      + +GV ER NRTL    R ++H   LP + W  AV  +  I N + +
Sbjct: 753 ACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc09g0251501 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-16
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 0


Query: 7   CGDCQVGKQTKTSH---RRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDDYSR 66
           C DC +GK TK  H    RLK   +    Q LH D  GP+         Y +   D+ +R
Sbjct: 633 CPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTR 692

Query: 67  FTWVRFL--KGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIH 126
           F WV  L  + +   + +  S+   +  +   +++ I+ D G E+ N+ L+ F    GI 
Sbjct: 693 FQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGIT 752

Query: 127 YEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITT 178
             +      + +GV ER NRTL    R ++H   LP + W  AV  +  I N + +
Sbjct: 753 ACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc09g0251501 vs. ExPASy Swiss-Prot
Match: Q12472 (Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR1 PE=1 SV=3)

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-16
Identity = 51/176 (28.98%), Postives = 80/176 (45.45%), Query Frame = 0


Query: 7   CGDCQVGKQTKTSH---RRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDDYSR 66
           C DC +GK TK  H    RLK   +    Q LH D  GP+         Y +   D+ +R
Sbjct: 633 CPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTR 692

Query: 67  FTWVRFL--KGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIH 126
           F WV  L  + +   + +  S+   +  +   +++ I+ D G E+ N+ L+ F    GI 
Sbjct: 693 FQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGIT 752

Query: 127 YEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITT 178
             +      + +GV ER NRTL    R ++H   LP + W  AV  +  I N + +
Sbjct: 753 ACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVS 808

[Close]

BLAST of Cmc09g0251501 vs. ExPASy TrEMBL
Match: A0A5D3BA69 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002290 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.3e-112
Identity = 194/217 (89.40%), Postives = 201/217 (92.63%), Query Frame = 0


Query: 1   MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDD 60
           +N KFFCG+CQVGKQTKTSHRRLKECYTI VL+LLHL+ MGPMQTESLGGKKYVLVVVDD
Sbjct: 279 INGKFFCGNCQVGKQTKTSHRRLKECYTISVLELLHLNLMGPMQTESLGGKKYVLVVVDD 338

Query: 61  YSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 120
           YS+FTWVRFLK K DTVKLCISLCLNL  EKGQKIIRIRSDHGKEFDNEDLNN CQTEGI
Sbjct: 339 YSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIRSDHGKEFDNEDLNNLCQTEGI 398

Query: 121 HYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSG 180
           H+EFAA ITPQQNGVVERKNR LQEM RVMIHAKN PLNFWAE VNTACHIH R+TTR G
Sbjct: 399 HHEFAAPITPQQNGVVERKNRMLQEMARVMIHAKNFPLNFWAEVVNTACHIHKRVTTRFG 458

Query: 181 TTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHRK 218
           TT TLYELWKGRKPNVKYFHIFGSTCYILADREYHRK
Sbjct: 459 TTITLYELWKGRKPNVKYFHIFGSTCYILADREYHRK 495

[Close]

BLAST of Cmc09g0251501 vs. ExPASy TrEMBL
Match: A0A5D3CS19 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001080 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.6e-99
Identity = 176/203 (86.70%), Postives = 186/203 (91.63%), Query Frame = 0


Query: 1   MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDD 60
           +N KFFCGDCQVGKQTK+SH +LKECYTI VL+LLHLD MGPMQTESLGGKKYVLVVVDD
Sbjct: 429 INHKFFCGDCQVGKQTKSSHIKLKECYTIRVLELLHLDLMGPMQTESLGGKKYVLVVVDD 488

Query: 61  YSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 120
           YSRFTWV FLKGKSDT KLCISLCLNL  EKGQKIIRIRSDH KEFDNEDLNNFCQ EGI
Sbjct: 489 YSRFTWVEFLKGKSDTGKLCISLCLNLQHEKGQKIIRIRSDHEKEFDNEDLNNFCQIEGI 548

Query: 121 HYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSG 180
           H+E AA ITPQQNGVVERKNRTLQEM RVMIHAKNLPLNFWAEAVNTACHIHNR+TTRSG
Sbjct: 549 HHELAAPITPQQNGVVERKNRTLQEMARVMIHAKNLPLNFWAEAVNTACHIHNRVTTRSG 608

Query: 181 TTTTLYELWKGRKPNV-KYFHIF 203
           TT TLYELWKGRKPN+ + + +F
Sbjct: 609 TTVTLYELWKGRKPNINRVYRVF 631

[Close]

BLAST of Cmc09g0251501 vs. ExPASy TrEMBL
Match: A0A5D3BBI3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00740 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.9e-93
Identity = 167/175 (95.43%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 42  PMQTESLGGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSD 101
           P + +  GGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRI SD
Sbjct: 462 PCKLKVWGGKKYVLVVVDDYSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRICSD 521

Query: 102 HGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFW 161
           HGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFW
Sbjct: 522 HGKEFDNEDLNNFCQTEGIHYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFW 581

Query: 162 AEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHR 217
           AEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGST YILADREYHR
Sbjct: 582 AEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYFHIFGSTYYILADREYHR 636

[Close]

BLAST of Cmc09g0251501 vs. ExPASy TrEMBL
Match: A0A5D3DQT9 (Gag/pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00570 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.6e-86
Identity = 164/217 (75.58%), Postives = 171/217 (78.80%), Query Frame = 0


Query: 1   MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDD 60
           +N KFFCGDC+VGKQTK SHRRLKECYTI VL+LLHLD +GPM+TESLG KKYVLVVVDD
Sbjct: 311 INGKFFCGDCRVGKQTKISHRRLKECYTIRVLELLHLDLIGPMKTESLGRKKYVLVVVDD 370

Query: 61  YSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 120
           YSRFT VRFLKGKSDTVKLCISL LNL  EKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI
Sbjct: 371 YSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 430

Query: 121 HYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSG 180
           H+EF A ITPQQNGVVERKNRT                                +TTRSG
Sbjct: 431 HHEFVAPITPQQNGVVERKNRT--------------------------------VTTRSG 490

Query: 181 TTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHRK 218
           TT  LYELWKGRKPNVKYFHIFGSTCYILADR YHRK
Sbjct: 491 TTIALYELWKGRKPNVKYFHIFGSTCYILADRGYHRK 495

[Close]

BLAST of Cmc09g0251501 vs. ExPASy TrEMBL
Match: A0A5D3CM30 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001750 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.5e-84
Identity = 153/217 (70.51%), Postives = 176/217 (81.11%), Query Frame = 0


Query: 1   MNDKFFCGDCQVGKQTKTSHRRLKECYTIIVLQLLHLDFMGPMQTESLGGKKYVLVVVDD 60
           +N  FFCG         ++H+  K CYT  VL+LLH+D M PM+TES GGK+YVLVVV D
Sbjct: 39  VNGNFFCGG--------STHKSWKGCYTNRVLELLHMDLMRPMKTESHGGKRYVLVVVVD 98

Query: 61  YSRFTWVRFLKGKSDTVKLCISLCLNLLPEKGQKIIRIRSDHGKEFDNEDLNNFCQTEGI 120
           YSR+TWV FL+GK+DTV++C +LCL L  EKG+KI RIRSDHGKEFDNE  N+FC  EGI
Sbjct: 99  YSRYTWVCFLQGKTDTVEICKNLCLKLQREKGKKITRIRSDHGKEFDNEGFNSFCLLEGI 158

Query: 121 HYEFAALITPQQNGVVERKNRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSG 180
            +EF+A ITPQQNGVVERKNRTLQEM  VMIHAKNLP+ FWAEAVN ACHIHNR+T R+G
Sbjct: 159 QHEFSAPITPQQNGVVERKNRTLQEMACVMIHAKNLPMCFWAEAVNIACHIHNRVTIRTG 218

Query: 181 TTTTLYELWKGRKPNVKYFHIFGSTCYILADREYHRK 218
            T TLYELWK RKPNVKYFH+FGSTCYILADREY +K
Sbjct: 219 MTVTLYELWKERKPNVKYFHVFGSTCYILADREYRQK 247

[Close]

BLAST of Cmc09g0251501 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 6.6e-05
Identity = 26/72 (36.11%), Postives = 33/72 (45.83%), Query Frame = 0


Query: 140 NRTLQEMTRVMIHAKNLPLNFWAEAVNTACHIHNRITTRSGTTTTLYELWKGRKPNVKYF 199
           NRT+ E  R M+    LP  F A+A NTA HI N+  + +       E+W    P   Y 
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 200 HIFGSTCYILAD 212
             FG   YI  D
Sbjct: 62  RRFGCVAYIHCD 73

The following BLAST results are available for this feature:

BLAST of Cmc09g0251501 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036855.1	1.3e-111	89.40	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95919.1 gag-pol polyprotein [...	[more]
KAA0054435.1	9.6e-99	86.70	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [...	[more]
KAA0067564.1	6.0e-93	95.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK26041.1	5.5e-86	75.58	gag/pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0054354.1	3.0e-84	70.51	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK12392.1 gag-pol polyprotein [...	[more]

BLAST of Cmc09g0251501 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.1e-32	34.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-28	32.20	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12491	2.8e-16	28.98	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	2.8e-16	28.98	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q12472	2.8e-16	28.98	Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc09g0251501 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA69	6.3e-112	89.40	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G...	[more]
A0A5D3CS19	4.6e-99	86.70	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G...	[more]
A0A5D3BBI3	2.9e-93	95.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DQT9	2.6e-86	75.58	Gag/pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567...	[more]
A0A5D3CM30	1.5e-84	70.51	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G...	[more]

BLAST of Cmc09g0251501 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	6.6e-05	36.11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 30..202 e-value: 2.1E-42 score: 146.7
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 33..126 e-value: 7.0E-12 score: 45.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 21..193 score: 20.218773
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 18..217
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 32..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0251501.1	Cmc09g0251501.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding