Cmc09g0251291 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0251291
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3-gypsy retrotransposon protein
Location	CMiso1.1chr09: 17363347 .. 17363628 (+)
RNA-Seq Expression	Cmc09g0251291
Synteny	Cmc09g0251291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCTTTGCATTGATTACAGAGAGCTAAATAAGGCGACAGTCAAAAATCGTTATCCTTTGCCCAGGATTGACGACTTGTTTGACCAGCTGCAAGAAGCCACTGTCTTCTTTAAGATCGATTTACGTTCGGGATACGACCAACTGAGGATCAGAGACAGTGATATTCCTAAGACTGCGTTCCGTTTCAGATACGGGCATTACGAGTTCATTGTGATGTTATTTGGTTTGACTAATGCTCCCGCAGTATTTATGGACTTGATGAACATAGTGTTTAATTAA

mRNA sequence

ATGCACCTTTGCATTGATTACAGAGAGCTAAATAAGGCGACAGTCAAAAATCGTTATCCTTTGCCCAGGATTGACGACTTGTTTGACCAGCTGCAAGAAGCCACTGTCTTCTTTAAGATCGATTTACGTTCGGGATACGACCAACTGAGGATCAGAGACAGTGATATTCCTAAGACTGCGTTCCGTTTCAGATACGGGCATTACGAGTTCATTGTGATGTTATTTGGTTTGACTAATGCTCCCGCAGTATTTATGGACTTGATGAACATAGTGTTTAATTAA

Coding sequence (CDS)

ATGCACCTTTGCATTGATTACAGAGAGCTAAATAAGGCGACAGTCAAAAATCGTTATCCTTTGCCCAGGATTGACGACTTGTTTGACCAGCTGCAAGAAGCCACTGTCTTCTTTAAGATCGATTTACGTTCGGGATACGACCAACTGAGGATCAGAGACAGTGATATTCCTAAGACTGCGTTCCGTTTCAGATACGGGCATTACGAGTTCATTGTGATGTTATTTGGTTTGACTAATGCTCCCGCAGTATTTATGGACTTGATGAACATAGTGTTTAATTAA

Protein sequence

MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTAFRFRYGHYEFIVMLFGLTNAPAVFMDLMNIVFN

Homology

[Close]

BLAST of Cmc09g0251291 vs. NCBI nr
Match: KAA0050280.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
           MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA
Sbjct: 319 MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 378

Query: 61  FRFRYGHYEFIVMLFGLTNAPAVF 85
           FRFRYGHYEFIVMLFGLTNAPA++
Sbjct: 379 FRFRYGHYEFIVMLFGLTNAPALY 402

[Close]

BLAST of Cmc09g0251291 vs. NCBI nr
Match: TYJ98127.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 3.3e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
           MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA
Sbjct: 319 MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 378

Query: 61  FRFRYGHYEFIVMLFGLTNAPA 83
           FRFRYGHYEFIVMLFGLTNAPA
Sbjct: 379 FRFRYGHYEFIVMLFGLTNAPA 400

[Close]

BLAST of Cmc09g0251291 vs. NCBI nr
Match: KAA0035420.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK25731.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1   MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
           MHLCIDYRELNK TVKNRYPLPRIDDLFDQLQ ATVFFKIDLRSGY QLRI+D D+PKTA
Sbjct: 389 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 448

Query: 61  FRFRYGHYEFIVMLFGLTNAPAVFMDLMNIVF 93
           FR RYGH+EFIVM FGLTNAPAVFMDLMN VF
Sbjct: 449 FRSRYGHFEFIVMSFGLTNAPAVFMDLMNRVF 480

[Close]

BLAST of Cmc09g0251291 vs. NCBI nr
Match: KAA0052401.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 84/92 (91.30%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
          MHLCIDYRELNK TVKNRYPLPRIDDLFDQLQ ATVF KIDLRSGY QLRIRDSDIPKTA
Sbjct: 1  MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61 FRFRYGHYEFIVMLFGLTNAPAVFMDLMNIVF 93
          FR RYGHYEFIVM FGLTNAP VFMDLMN VF
Sbjct: 61 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVF 92

[Close]

BLAST of Cmc09g0251291 vs. NCBI nr
Match: TYK19227.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 84/92 (91.30%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
          MHLCIDYRELNK TVKNRYPLPRIDDLFDQLQ ATVF KIDLRSGY QLRIRDSDIPKTA
Sbjct: 1  MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61 FRFRYGHYEFIVMLFGLTNAPAVFMDLMNIVF 93
          FR RYGHYEFIVM FGLTNAP VFMDLMN VF
Sbjct: 61 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVF 92

[Close]

BLAST of Cmc09g0251291 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 1  MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
          + +CIDYR L K T+KN+YP+PR+DDLFD+L +AT F K+DLRSGY Q+RI   D PKT 
Sbjct: 6  LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61 FRFRYGHYEFIVMLFGLTNAPAVFMDLMNIV 92
             RYG +EF VM FGLTNA A F +LMN V
Sbjct: 66 CVTRYGSFEFRVMPFGLTNALATFCNLMNNV 96

[Close]

BLAST of Cmc09g0251291 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 91.3 bits (225), Expect = 6.3e-18
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 3   LCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTAFR 62
           LC+DYR LNKAT+ + +PLPRID+L  ++  A +F  +DL SGY Q+ +   D  KTAF 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 63  FRYGHYEFIVMLFGLTNAPAVFMDLMNIVF 93
              G YE+ VM FGL NAP+ F   M   F
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTF 737

[Close]

BLAST of Cmc09g0251291 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 6.3e-18
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 3   LCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTAFR 62
           LC+DYR LNKAT+ + +PLPRID+L  ++  A +F  +DL SGY Q+ +   D  KTAF 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 63  FRYGHYEFIVMLFGLTNAPAVFMDLMNIVF 93
              G YE+ VM FGL NAP+ F   M   F
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTF 763

[Close]

BLAST of Cmc09g0251291 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-17
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 5   IDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTAFRFR 64
           IDYR+LN+ T+ +RYP+P +D++  +L +   F  IDL  G+ Q+ + +  I KTAF  +
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YGHYEFIVMLFGLTNAPAVFMDLMN 90
            GHYE++ M FGL NAPA F   MN
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMN 349

[Close]

BLAST of Cmc09g0251291 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.1e-17
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 3   LCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTAFR 62
           + IDYR+LN+ TV +R+P+P +D++  +L     F  IDL  G+ Q+ +    + KTAF 
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323

Query: 63  FRYGHYEFIVMLFGLTNAPAVFMDLMN 90
            ++GHYE++ M FGL NAPA F   MN
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMN 350

[Close]

BLAST of Cmc09g0251291 vs. ExPASy TrEMBL
Match: A0A5A7U4X9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G001340 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.2e-41
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
           MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA
Sbjct: 319 MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 378

Query: 61  FRFRYGHYEFIVMLFGLTNAPAVF 85
           FRFRYGHYEFIVMLFGLTNAPA++
Sbjct: 379 FRFRYGHYEFIVMLFGLTNAPALY 402

[Close]

BLAST of Cmc09g0251291 vs. ExPASy TrEMBL
Match: A0A5D3BG78 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00030 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1   MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
           MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA
Sbjct: 319 MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 378

Query: 61  FRFRYGHYEFIVMLFGLTNAPA 83
           FRFRYGHYEFIVMLFGLTNAPA
Sbjct: 379 FRFRYGHYEFIVMLFGLTNAPA 400

[Close]

BLAST of Cmc09g0251291 vs. ExPASy TrEMBL
Match: A0A5A7SWK4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00250 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.1e-40
Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1   MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
           MHLCIDYRELNK TVKNRYPLPRIDDLFDQLQ ATVFFKIDLRSGY QLRI+D D+PKTA
Sbjct: 389 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFFKIDLRSGYHQLRIKDGDVPKTA 448

Query: 61  FRFRYGHYEFIVMLFGLTNAPAVFMDLMNIVF 93
           FR RYGH+EFIVM FGLTNAPAVFMDLMN VF
Sbjct: 449 FRSRYGHFEFIVMSFGLTNAPAVFMDLMNRVF 480

[Close]

BLAST of Cmc09g0251291 vs. ExPASy TrEMBL
Match: A0A5A7UFV0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1994G00240 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.1e-40
Identity = 84/92 (91.30%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
          MHLCIDYRELNK TVKNRYPLPRIDDLFDQLQ ATVF KIDLRSGY QLRIRDSDIPKTA
Sbjct: 1  MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61 FRFRYGHYEFIVMLFGLTNAPAVFMDLMNIVF 93
          FR RYGHYEFIVM FGLTNAP VFMDLMN VF
Sbjct: 61 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVF 92

[Close]

BLAST of Cmc09g0251291 vs. ExPASy TrEMBL
Match: A0A5D3D6P2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00250 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.1e-40
Identity = 84/92 (91.30%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MHLCIDYRELNKATVKNRYPLPRIDDLFDQLQEATVFFKIDLRSGYDQLRIRDSDIPKTA 60
          MHLCIDYRELNK TVKNRYPLPRIDDLFDQLQ ATVF KIDLRSGY QLRIRDSDIPKTA
Sbjct: 1  MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61 FRFRYGHYEFIVMLFGLTNAPAVFMDLMNIVF 93
          FR RYGHYEFIVM FGLTNAP VFMDLMN VF
Sbjct: 61 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVF 92

The following BLAST results are available for this feature:

BLAST of Cmc09g0251291 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050280.1	1.5e-40	97.62	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ98127.1	3.3e-40	100.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035420.1	1.3e-39	89.13	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK25731.1 ty3-gyp...	[more]
KAA0052401.1	1.3e-39	91.30	pol protein [Cucumis melo var. makuwa]	[more]
TYK19227.1	1.3e-39	91.30	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0251291 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	1.1e-25	61.54	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	6.3e-18	48.89	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	6.3e-18	48.89	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P20825	3.1e-17	45.88	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	9.1e-17	43.68	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc09g0251291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4X9	7.2e-41	97.62	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BG78	1.6e-40	100.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SWK4	6.1e-40	89.13	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UFV0	6.1e-40	91.30	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1994G00240 P...	[more]
A0A5D3D6P2	6.1e-40	91.30	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00250 P...	[more]

BLAST of Cmc09g0251291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..91 e-value: 1.3E-37 score: 131.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..92 e-value: 1.7E-9 score: 37.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..79 e-value: 1.3E-37 score: 131.2
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 2..92
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..92
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..92 e-value: 5.12575E-42 score: 133.49
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0251291.1	Cmc09g0251291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding