Cmc09g0250861 (gene) Melon (Charmono) v1.1

Overview
NameCmc09g0250861
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy1-copia retrotransposon protein
LocationCMiso1.1chr09: 16900318 .. 16900890 (+)
RNA-Seq ExpressionCmc09g0250861
SyntenyCmc09g0250861
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGACCTAGGAGAAGCAGACGTGATTCTTGGTGTTAAAATCAGGAAAATCAAAACTGGTTTGTCCTTTTGTCAATCTCACTACGTGGAGAAAATACTAAAGGAATTTGATTCATTTGATGTTTCTCCAATAAGAATTCCCTATGATGCCAGTAAACATCTTAAGAAGAATAAAGGAGATAATGTCTCTGAACCTGAATATGCAAAGATCATAGGTAGTGTTATGTATCTAATGAATTATACTAGACCTGATATTGCATATGCTGTCAGTAGATTAAGTAGATACACACACAATCCTGATAGATACCACTGGGATGCTTTACGGCATCTATTGAGACATCTTAAAAGGACATTAAATCACTGTTTGCACTTTAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAATGGGTCACAGACAATGATGAGGTTAACTCTACTAGTGAGTATGTATTTTTGCTCGGGGGTGGAGCAATATCTTGGAAGCCTGCTAAACAAACATGTATCGCTAAACAAACATGGAATCCGAGCTTATAGCATTAGAGTTGGTAGAACAGGAGTCTGA

mRNA sequence

ATGAAAGACCTAGGAGAAGCAGACGTGATTCTTGGTGTTAAAATCAGGAAAATCAAAACTGGTTTGTCCTTTTGTCAATCTCACTACGTGGAGAAAATACTAAAGGAATTTGATTCATTTGATGTTTCTCCAATAAGAATTCCCTATGATGCCAGTAAACATCTTAAGAAGAATAAAGGAGATAATGTCTCTGAACCTGAATATGCAAAGATCATAGGTAGTGTTATGTATCTAATGAATTATACTAGACCTGATATTGCATATGCTGTCAGTAGATTAAGTAGATACACACACAATCCTGATAGATACCACTGGGATGCTTTACGGCATCTATTGAGACATCTTAAAAGGACATTAAATCACTGTTTGCACTTTAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAATGGGTCACAGACAATGATGAGGTTAACTCTACTAGTGAGTATGTATTTTTGCTCGGGGGTGGAGCAATATCTTGGAAGCCTGCTAAACAAACATGTATCGCTAAACAAACATGGAATCCGAGCTTATAGCATTAGAGTTGGTAGAACAGGAGTCTGA

Coding sequence (CDS)

ATGAAAGACCTAGGAGAAGCAGACGTGATTCTTGGTGTTAAAATCAGGAAAATCAAAACTGGTTTGTCCTTTTGTCAATCTCACTACGTGGAGAAAATACTAAAGGAATTTGATTCATTTGATGTTTCTCCAATAAGAATTCCCTATGATGCCAGTAAACATCTTAAGAAGAATAAAGGAGATAATGTCTCTGAACCTGAATATGCAAAGATCATAGGTAGTGTTATGTATCTAATGAATTATACTAGACCTGATATTGCATATGCTGTCAGTAGATTAAGTAGATACACACACAATCCTGATAGATACCACTGGGATGCTTTACGGCATCTATTGAGACATCTTAAAAGGACATTAAATCACTGTTTGCACTTTAACAAATTTCCTGTCGTACTAGAAGGATATTGTGATGCAAATGGGTCACAGACAATGATGAGGTTAACTCTACTAGTGAGTATGTATTTTTGCTCGGGGGTGGAGCAATATCTTGGAAGCCTGCTAAACAAACATGTATCGCTAAACAAACATGGAATCCGAGCTTATAGCATTAGAGTTGGTAGAACAGGAGTCTGA

Protein sequence

MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKGDNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLNHCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRAYSIRVGRTGV
Homology
[Close]
BLAST of Cmc09g0250861 vs. NCBI nr
Match: TYJ98195.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 392.9 bits (1008), Expect = 1.6e-105
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
           DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN
Sbjct: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120

Query: 121 HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA 180
           HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA
Sbjct: 121 HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA 180

Query: 181 YSIRVGRTGV 191
           YSIRVGRTGV
Sbjct: 181 YSIRVGRTGV 190

[Close]
BLAST of Cmc09g0250861 vs. NCBI nr
Match: KAA0050213.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 3.5e-105
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           M+DLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG
Sbjct: 149 MRDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 208

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
           DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN
Sbjct: 209 DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 268

Query: 121 HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA 180
           HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA
Sbjct: 269 HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA 328

Query: 181 YSIRVGRTGV 191
           YSIRVGRTGV
Sbjct: 329 YSIRVGRTGV 338

[Close]
BLAST of Cmc09g0250861 vs. NCBI nr
Match: KAA0049794.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 262.3 bits (669), Expect = 3.2e-66
Identity = 121/139 (87.05%), Postives = 133/139 (95.68%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           MKDLGEAD ILGVKIRK KT LS CQSHYVEKILK+FDSFDVSP+R P+DASKHLKKNKG
Sbjct: 1   MKDLGEADAILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
           D+VS+PEYAKIIG+VMYLMNYTRPDIAYA+SRLSRYTHNP+RYHWDALRHLLR+LK T++
Sbjct: 61  DSVSQPEYAKIIGNVMYLMNYTRPDIAYAISRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 121 HCLHFNKFPVVLEGYCDAN 140
           +CLHFNKFPVVLEGYCDAN
Sbjct: 121 YCLHFNKFPVVLEGYCDAN 139

[Close]
BLAST of Cmc09g0250861 vs. NCBI nr
Match: KAA0036644.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.5e-66
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           MKDLGEADVILGVKIRK KT LS CQSHYVEKILK+FDSFDVSP+R P+DASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
           D+VS+PEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYHWDALRHLLR+LK T++
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 121 HCLHFNKFPVVLEGYCDAN 140
           +CLHF KFP VLEGYCDAN
Sbjct: 121 YCLHFKKFPAVLEGYCDAN 139

[Close]
BLAST of Cmc09g0250861 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 5.5e-66
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1    MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
            MKDLGEADVILGVKIRK KT LS CQSHYVEKILK+FDSFDVSP+R P+DASKHLKKNKG
Sbjct: 1057 MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 1116

Query: 61   DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
            D+VS+PEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYHWDALRHLLR+LK T++
Sbjct: 1117 DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 1176

Query: 121  HCLHFNKFPVVLEGYCDAN 140
            +CLHF KFP VLEGYCDAN
Sbjct: 1177 YCLHFKKFPAVLEGYCDAN 1195

[Close]
BLAST of Cmc09g0250861 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.6e-22
Identity = 58/150 (38.67%), Postives = 89/150 (59.33%), Query Frame = 0 

Query: 1    MKDLGEADVILGVKIRKIKTG--LSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKN 60
            MKDLG A  ILG+KI + +T   L   Q  Y+E++L+ F+  +  P+  P   + HLK +
Sbjct: 1035 MKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTP--LAGHLKLS 1094

Query: 61   K---------GDNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALR 120
            K           N+++  Y+  +GS+MY M  TRPDIA+AV  +SR+  NP + HW+A++
Sbjct: 1095 KKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVK 1154

Query: 121  HLLRHLKRTLNHCLHFNKFPVVLEGYCDAN 140
             +LR+L+ T   CL F     +L+GY DA+
Sbjct: 1155 WILRYLRGTTGDCLCFGGSDPILKGYTDAD 1182

[Close]
BLAST of Cmc09g0250861 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-17
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 0 

Query: 1    MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
            +KD  E    LG++ +++ TGL   Q  Y+  +L   +     P+  P   S  L    G
Sbjct: 1177 VKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSG 1236

Query: 61   DNVSEP-EYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTL 120
              +++P EY  I+GS+ YL  +TRPDI+YAV+RLS++ H P   H  AL+ +LR+L  T 
Sbjct: 1237 TKLTDPTEYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTP 1296

Query: 121  NHCLHFNKFPVV-LEGYCDAN 140
            NH +   K   + L  Y DA+
Sbjct: 1297 NHGIFLKKGNTLSLHAYSDAD 1316

[Close]
BLAST of Cmc09g0250861 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-16
Identity = 48/141 (34.04%), Postives = 77/141 (54.61%), Query Frame = 0 

Query: 1    MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
            +K+  +    LG++ +++  GL   Q  Y   +L   +     P+  P   S  L  + G
Sbjct: 1160 VKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSG 1219

Query: 61   DNVSEP-EYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTL 120
              + +P EY  I+GS+ YL  +TRPD++YAV+RLS+Y H P   HW+AL+ +LR+L  T 
Sbjct: 1220 TKLPDPTEYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTP 1279

Query: 121  NHCLHFNKFPVV-LEGYCDAN 140
            +H +   K   + L  Y DA+
Sbjct: 1280 DHGIFLKKGNTLSLHAYSDAD 1299

[Close]
BLAST of Cmc09g0250861 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-14
Identity = 43/140 (30.71%), Postives = 75/140 (53.57%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           MKDLG     LG++I+   +GL   Q+ Y E+IL      D  P+  P     +   +  
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTA 92

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
                 ++  I+G++ YL   TRPDI+YAV+ + +  H P    +D L+ +LR++K T+ 
Sbjct: 93  KYPDPSDFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIF 152

Query: 121 HCLHFNK-FPVVLEGYCDAN 140
           H L+ +K   + ++ +CD++
Sbjct: 153 HGLYIHKNSKLNVQAFCDSD 171

[Close]
BLAST of Cmc09g0250861 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 45/142 (31.69%), Postives = 74/142 (52.11%), Query Frame = 0 

Query: 1    MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
            M DL E    +G++I   +  +   QS YV+KIL +F+  + + +  P  +  + +    
Sbjct: 1114 MTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNS 1173

Query: 61   DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
            D         +IG +MY+M  TRPD+  AV+ LSRY+   +   W  L+ +LR+LK T++
Sbjct: 1174 DEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTID 1233

Query: 121  HCLHFNK---FPVVLEGYCDAN 140
              L F K   F   + GY D++
Sbjct: 1234 MKLIFKKNLAFENKIIGYVDSD 1255

[Close]
BLAST of Cmc09g0250861 vs. ExPASy TrEMBL
Match: A0A5D3BI80 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00860 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 7.7e-106
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
           DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN
Sbjct: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120

Query: 121 HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA 180
           HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA
Sbjct: 121 HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA 180

Query: 181 YSIRVGRTGV 191
           YSIRVGRTGV
Sbjct: 181 YSIRVGRTGV 190

[Close]
BLAST of Cmc09g0250861 vs. ExPASy TrEMBL
Match: A0A5A7U2S6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00480 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.7e-105
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           M+DLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG
Sbjct: 149 MRDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 208

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
           DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN
Sbjct: 209 DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 268

Query: 121 HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA 180
           HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA
Sbjct: 269 HCLHFNKFPVVLEGYCDANGSQTMMRLTLLVSMYFCSGVEQYLGSLLNKHVSLNKHGIRA 328

Query: 181 YSIRVGRTGV 191
           YSIRVGRTGV
Sbjct: 329 YSIRVGRTGV 338

[Close]
BLAST of Cmc09g0250861 vs. ExPASy TrEMBL
Match: A0A5A7U3G0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001560 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.6e-66
Identity = 121/139 (87.05%), Postives = 133/139 (95.68%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           MKDLGEAD ILGVKIRK KT LS CQSHYVEKILK+FDSFDVSP+R P+DASKHLKKNKG
Sbjct: 1   MKDLGEADAILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
           D+VS+PEYAKIIG+VMYLMNYTRPDIAYA+SRLSRYTHNP+RYHWDALRHLLR+LK T++
Sbjct: 61  DSVSQPEYAKIIGNVMYLMNYTRPDIAYAISRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 121 HCLHFNKFPVVLEGYCDAN 140
           +CLHFNKFPVVLEGYCDAN
Sbjct: 121 YCLHFNKFPVVLEGYCDAN 139

[Close]
BLAST of Cmc09g0250861 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1    MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
            MKDLGEADVILGVKIRK KT LS CQSHYVEKILK+FDSFDVSP+R P+DASKHLKKNKG
Sbjct: 1057 MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 1116

Query: 61   DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
            D+VS+PEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYHWDALRHLLR+LK T++
Sbjct: 1117 DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 1176

Query: 121  HCLHFNKFPVVLEGYCDAN 140
            +CLHF KFP VLEGYCDAN
Sbjct: 1177 YCLHFKKFPAVLEGYCDAN 1195

[Close]
BLAST of Cmc09g0250861 vs. ExPASy TrEMBL
Match: A0A5A7SZD1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00130 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 122/139 (87.77%), Postives = 132/139 (94.96%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           MKDLGEADVILGVKIRK KT LS CQSHYVEKILK+FDSFDVSP+R P+DASKHLKKNKG
Sbjct: 1   MKDLGEADVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKG 60

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
           D+VS+PEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNP+RYHWDALRHLLR+LK T++
Sbjct: 61  DSVSQPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTID 120

Query: 121 HCLHFNKFPVVLEGYCDAN 140
           +CLHF KFP VLEGYCDAN
Sbjct: 121 YCLHFKKFPAVLEGYCDAN 139

[Close]
BLAST of Cmc09g0250861 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 4.7e-15
Identity = 43/140 (30.71%), Postives = 75/140 (53.57%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNKG 60
           MKDLG     LG++I+   +GL   Q+ Y E+IL      D  P+  P     +   +  
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTA 92

Query: 61  DNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTLN 120
                 ++  I+G++ YL   TRPDI+YAV+ + +  H P    +D L+ +LR++K T+ 
Sbjct: 93  KYPDPSDFRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIF 152

Query: 121 HCLHFNK-FPVVLEGYCDAN 140
           H L+ +K   + ++ +CD++
Sbjct: 153 HGLYIHKNSKLNVQAFCDSD 171

[Close]
BLAST of Cmc09g0250861 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 72.0 bits (175), Expect = 5.8e-13
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 0 

Query: 1   MKDLGEADVILGVKIRKIKTGLSFCQSHYVEKILKEFDSFDVSPIRIPYDASKHLKKNK- 60
           ++DLG     LG++I +   G++ CQ  Y   +L E       P  +P D S     +  
Sbjct: 310 LRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSG 369

Query: 61  GDNVSEPEYAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPDRYHWDALRHLLRHLKRTL 120
           GD V    Y ++IG +MYL   TR DI++AV++LS+++  P   H  A+  +L ++K T+
Sbjct: 370 GDFVDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTV 429

Query: 121 NHCLHF-NKFPVVLEGYCDAN 140
              L + ++  + L+ + DA+
Sbjct: 430 GQGLFYSSQAEMQLQVFSDAS 449

The following BLAST results are available for this feature:
BLAST of Cmc09g0250861 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98195.11.6e-105100.00ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050213.13.5e-10599.47ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049794.13.2e-6687.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0036644.15.5e-6687.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK06518.15.5e-6687.77ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Cmc09g0250861 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109788.6e-2238.67Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW21.7e-1736.17Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.4e-1634.04Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P925196.6e-1430.71Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
P041461.6e-1231.69Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
BLAST of Cmc09g0250861 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BI807.7e-106100.00Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U2S61.7e-10599.47Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7U3G01.6e-6687.05Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3C5T22.7e-6687.77Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SZD12.7e-6687.77Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of Cmc09g0250861 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00810.14.7e-1530.71DNA/RNA polymerases superfamily protein [more]
AT4G23160.15.8e-1330.50cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc09g0250861.1Cmc09g0250861.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding