Cmc09g0249321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0249321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Transposon Ty1-LR1 Gag-Pol polyprotein
Location	CMiso1.1chr09: 15096952 .. 15097629 (+)
RNA-Seq Expression	Cmc09g0249321
Synteny	Cmc09g0249321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATCCTGAAAACCTCTCAATCGTTAGTGAAACACCTGTTGCTGAAACTGTTGATACTTCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACTTTTATAGTGAAAAGGCGTGATGAAATTGACTGTAACTTCACAAACTTGTTCTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAGAAGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTGAACCTTCCTATGGGAAACAAGCCAATTAGGTGTAAGTGGATTTTCAAAAGAAAAAAAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAATGGTAGTAGGGTATACCCAGAAACAAGACATTGATTATTTTGACACATATTCCCCTATAACTAAGATAACCACAATTAGGGCCTTGATTGCATTGGCCGCAATACATAGCCTTCTTATTCACCAAATGGACGTAAAAACTGCTTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATTTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTGTACGGTCTCAAGTAA

mRNA sequence

ATGCATGATCCTGAAAACCTCTCAATCGTTAGTGAAACACCTGTTGCTGAAACTGTTGATACTTCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACTTTTATAGTGAAAAGGCGTGATGAAATTGACTGTAACTTCACAAACTTGTTCTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAGAAGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTGAACCTTCCTATGGGAAACAAGCCAATTAGGTGTAAGTGGATTTTCAAAAGAAAAAAAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAATGGTAGTAGGGTATACCCAGAAACAAGACATTGATTATTTTGACACATATTCCCCTATAACTAAGATAACCACAATTAGGGCCTTGATTGCATTGGCCGCAATACATAGCCTTCTTATTCACCAAATGGACGTAAAAACTGCTTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATTTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTGTACGGTCTCAAGTAA

Coding sequence (CDS)

ATGCATGATCCTGAAAACCTCTCAATCGTTAGTGAAACACCTGTTGCTGAAACTGTTGATACTTCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAGATTTCCTAAGCACTTTTATAGTGAAAAGGCGTGATGAAATTGACTGTAACTTCACAAACTTGTTCTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCGCTGAACTCTGTAGAGTCAAGTATGTGGAAAGAAGCCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTGAACCTTCCTATGGGAAACAAGCCAATTAGGTGTAAGTGGATTTTCAAAAGAAAAAAAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAATGGTAGTAGGGTATACCCAGAAACAAGACATTGATTATTTTGACACATATTCCCCTATAACTAAGATAACCACAATTAGGGCCTTGATTGCATTGGCCGCAATACATAGCCTTCTTATTCACCAAATGGACGTAAAAACTGCTTTTTTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCAGAAGGCTTTAAAATTTCTGGGCAAGAAAACAAAGTGTGTAAACTGAGAAAATCCCTGTACGGTCTCAAGTAA

Protein sequence

MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK

Homology

[Close]

BLAST of Cmc09g0249321 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 409.1 bits (1050), Expect = 2.5e-110
Identity = 203/225 (90.22%), Postives = 213/225 (94.67%), Query Frame = 0


Query: 1   MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDC 60
           MHDPE   IVSE PV+ETVDT NL CELE RRSKRQRTEKSFGPDFLSTFIV+RRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW 120
           NFTNLFLIDEDPKTYQEALNSV+S MWKEAIKSELDSL MNHTW+LV+LPMGNKPIRCKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIH 180
           IFKRK KPNG IERYKARL+VVGYTQKQ +DYFDTYSP+TKITTIRALIALAAIH+LLIH
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK 226
           QMDVKTAFLNG+LEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK
Sbjct: 946 QMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK 987

[Close]

BLAST of Cmc09g0249321 vs. NCBI nr
Match: KAA0042080.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 308.5 bits (789), Expect = 4.6e-80
Identity = 152/168 (90.48%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDC 60
           MHDPEN SIVSE PV+ETVDTSNLRCELELRRSKRQRTEKSFG DFLSTFIV+RRDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW 120
           NFTNL+LIDEDPKTYQEALNSV+ SMWKEAI SELDSLVMNHTWDLV+LPM NKPIRCKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRAL 169
           IFKRK KPNGSIERYKARL+VVGYTQKQ IDYFDTYSP+TKITTIRAL
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc09g0249321 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 4.5e-75
Identity = 141/159 (88.68%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDC 60
           MHDPEN SIVSET V+E V+TSNLRCELELRRSKRQRTEKSF PDFLSTFIV+RRDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW 120
           NFTNL+LIDEDPKTYQE LNSVE SMWKEAIKSELDSLVMNHTWDLV+LPMGNKPIRC+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPI 160
           IFKRK KPNGS+ERYKARL+VVGYTQKQ IDYFDTYSP+
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc09g0249321 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 5.9e-75
Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDC 60
           MHDPE   IVSE PV+E VDT NL CELE RRSKRQRTEKSFGPDFLSTFIV+RRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW 120
           NFTNLFLI+ED KTYQEALNSV+S MWKEAIKSELDSL MNHTW+LV+LPMGNKPIRCKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIR 167
           IFKRK KPNG IERYKARL+VVGYTQKQ +DYFDTYSP+TKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc09g0249321 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 284.3 bits (726), Expect = 9.4e-73
Identity = 137/221 (61.99%), Postives = 184/221 (83.26%), Query Frame = 0


Query: 9   IVSETPVAETVDTSNLR--CELELRRSKRQRTEKSFGPDFLSTFIVK--RRDEIDCNFTN 68
           I+S   V++   +S+++    +E RRSKR RTE SFGPDFL++F+ +    D +  +F +
Sbjct: 118 IMSSVNVSQVDPSSSIKEIEHVEPRRSKRCRTETSFGPDFLTSFLTENFHVDMLSEDFVS 177

Query: 69  LFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKR 128
           +FL++ DPKTYQEA+ SV++++WKEAIKSE+DS++ NHTW+L +LP GNKPI  KWIFK+
Sbjct: 178 IFLLENDPKTYQEAITSVDANLWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIFKK 237

Query: 129 KKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDV 188
           K +P+G++++YKARL++ G+TQK  +DYFDTYSP+TKITTIR+LI++AAI+ LLIHQMDV
Sbjct: 238 KLRPDGTVDKYKARLVIRGFTQKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQMDV 297

Query: 189 KTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK 226
           KTAFLNGDL+EEIYM QPEGF +SG E+KVCKLRKSLYGLK
Sbjct: 298 KTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLK 338

[Close]

BLAST of Cmc09g0249321 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 92/196 (46.94%), Postives = 132/196 (67.35%), Query Frame = 0


Query: 30  LRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKE 89
           LRRS+R R E    P   ST  V   D            D +P++ +E L+  E +   +
Sbjct: 784 LRRSERPRVESRRYP---STEYVLISD------------DREPESLKEVLSHPEKNQLMK 843

Query: 90  AIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLMVVGYTQKQD 149
           A++ E++SL  N T+ LV LP G +P++CKW+FK KK  +  + RYKARL+V G+ QK+ 
Sbjct: 844 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 903

Query: 150 IDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMTQPEGFKISG 209
           ID+ + +SP+ K+T+IR +++LAA   L + Q+DVKTAFL+GDLEEEIYM QPEGF+++G
Sbjct: 904 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 963

Query: 210 QENKVCKLRKSLYGLK 226
           +++ VCKL KSLYGLK
Sbjct: 964 KKHMVCKLNKSLYGLK 964

[Close]

BLAST of Cmc09g0249321 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-33
Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 69   DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPI-RCKWIFKRKKK 128
            + +P+T   A+ +++   W+ A+ SE+++ + NHTWDLV  P  +  I  C+WIF +K  
Sbjct: 953  ESEPRT---AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 129  PNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTA 188
             +GS+ RYKARL+  GY Q+  +DY +T+SP+ K T+IR ++ +A   S  I Q+DV  A
Sbjct: 1013 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1072

Query: 189  FLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK 226
            FL G L +++YM+QP GF    + N VCKLRK+LYGLK
Sbjct: 1073 FLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLK 1107

[Close]

BLAST of Cmc09g0249321 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-32
Identity = 68/158 (43.04%), Postives = 106/158 (67.09%), Query Frame = 0


Query: 69   DEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPI-RCKWIFKRKKK 128
            + +P+T   A+ +++   W++A+ SE+++ + NHTWDLV  P  +  I  C+WIF +K  
Sbjct: 936  NSEPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFN 995

Query: 129  PNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTA 188
             +GS+ RYKARL+  GY Q+  +DY +T+SP+ K T+IR ++ +A   S  I Q+DV  A
Sbjct: 996  SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1055

Query: 189  FLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK 226
            FL G L +E+YM+QP GF    + + VC+LRK++YGLK
Sbjct: 1056 FLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLK 1090

[Close]

BLAST of Cmc09g0249321 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 138.7 bits (348), Expect = 8.3e-32
Identity = 78/205 (38.05%), Postives = 122/205 (59.51%), Query Frame = 0


Query: 21   TSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDCNFTNLFLIDEDPKTYQEALN 80
            T N   E+  RRS+R +T+    P           +++  N   +F  ++ P ++ E   
Sbjct: 846  TKNDGIEIINRRSERLKTK----PQISYNEEDNSLNKVVLNAHTIF--NDVPNSFDEIQY 905

Query: 81   SVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKKPNGSIERYKARLM 140
              + S W+EAI +EL++  +N+TW +   P     +  +W+F  K    G+  RYKARL+
Sbjct: 906  RDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLV 965

Query: 141  VVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFLNGDLEEEIYMT 200
              G+TQK  IDY +T++P+ +I++ R +++L   ++L +HQMDVKTAFLNG L+EEIYM 
Sbjct: 966  ARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMR 1025

Query: 201  QPEGFKISGQENKVCKLRKSLYGLK 226
             P+G  IS   + VCKL K++YGLK
Sbjct: 1026 LPQG--ISCNSDNVCKLNKAIYGLK 1042

[Close]

BLAST of Cmc09g0249321 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 38/105 (36.19%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 68  IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKK 127
           I ++PK+    + +++   W +A++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKS---VIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALA 173
            +G+++R KARL+  G+ Q++ I + +TYSP+ +  TIR ++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc09g0249321 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.2e-110
Identity = 203/225 (90.22%), Postives = 213/225 (94.67%), Query Frame = 0


Query: 1   MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDC 60
           MHDPE   IVSE PV+ETVDT NL CELE RRSKRQRTEKSFGPDFLSTFIV+RRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW 120
           NFTNLFLIDEDPKTYQEALNSV+S MWKEAIKSELDSL MNHTW+LV+LPMGNKPIRCKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIH 180
           IFKRK KPNG IERYKARL+VVGYTQKQ +DYFDTYSP+TKITTIRALIALAAIH+LLIH
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QMDVKTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK 226
           QMDVKTAFLNG+LEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK
Sbjct: 946 QMDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK 987

[Close]

BLAST of Cmc09g0249321 vs. ExPASy TrEMBL
Match: A0A5A7TFH9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003410 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 2.2e-80
Identity = 152/168 (90.48%), Postives = 159/168 (94.64%), Query Frame = 0


Query: 1   MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDC 60
           MHDPEN SIVSE PV+ETVDTSNLRCELELRRSKRQRTEKSFG DFLSTFIV+RRDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW 120
           NFTNL+LIDEDPKTYQEALNSV+ SMWKEAI SELDSLVMNHTWDLV+LPM NKPIRCKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRAL 169
           IFKRK KPNGSIERYKARL+VVGYTQKQ IDYFDTYSP+TKITTIRAL
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc09g0249321 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.2e-75
Identity = 141/159 (88.68%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDC 60
           MHDPEN SIVSET V+E V+TSNLRCELELRRSKRQRTEKSF PDFLSTFIV+RRDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW 120
           NFTNL+LIDEDPKTYQE LNSVE SMWKEAIKSELDSLVMNHTWDLV+LPMGNKPIRC+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPI 160
           IFKRK KPNGS+ERYKARL+VVGYTQKQ IDYFDTYSP+
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc09g0249321 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.8e-75
Identity = 143/166 (86.14%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MHDPENLSIVSETPVAETVDTSNLRCELELRRSKRQRTEKSFGPDFLSTFIVKRRDEIDC 60
           MHDPE   IVSE PV+E VDT NL CELE RRSKRQRTEKSFGPDFLSTFIV+RRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKW 120
           NFTNLFLI+ED KTYQEALNSV+S MWKEAIKSELDSL MNHTW+LV+LPMGNKPIRCKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIR 167
           IFKRK KPNG IERYKARL+VVGYTQKQ +DYFDTYSP+TKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc09g0249321 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.5e-73
Identity = 137/221 (61.99%), Postives = 184/221 (83.26%), Query Frame = 0


Query: 9   IVSETPVAETVDTSNLR--CELELRRSKRQRTEKSFGPDFLSTFIVK--RRDEIDCNFTN 68
           I+S   V++   +S+++    +E RRSKR RTE SFGPDFL++F+ +    D +  +F +
Sbjct: 118 IMSSVNVSQVDPSSSIKEIEHVEPRRSKRCRTETSFGPDFLTSFLTENFHVDMLSEDFVS 177

Query: 69  LFLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKR 128
           +FL++ DPKTYQEA+ SV++++WKEAIKSE+DS++ NHTW+L +LP GNKPI  KWIFK+
Sbjct: 178 IFLLENDPKTYQEAITSVDANLWKEAIKSEVDSILSNHTWELTDLPKGNKPIGSKWIFKK 237

Query: 129 KKKPNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDV 188
           K +P+G++++YKARL++ G+TQK  +DYFDTYSP+TKITTIR+LI++AAI+ LLIHQMDV
Sbjct: 238 KLRPDGTVDKYKARLVIRGFTQKHGLDYFDTYSPVTKITTIRSLISIAAINGLLIHQMDV 297

Query: 189 KTAFLNGDLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLK 226
           KTAFLNGDL+EEIYM QPEGF +SG E+KVCKLRKSLYGLK
Sbjct: 298 KTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLK 338

[Close]

BLAST of Cmc09g0249321 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-39
Identity = 73/160 (45.62%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 70  EDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKKPN 129
           ++P TY EA    E  +W  A+  E+ ++   HTW++  LP   KPI CKW++K K   +
Sbjct: 84  KEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 130 GSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALAAIHSLLIHQMDVKTAFL 189
           G+IERYKARL+  GYTQ++ ID+ +T+SP+ K+T+++ ++A++AI++  +HQ+D+  AFL
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

Query: 190 NGDLEEEIYMTQPEGFKI----SGQENKVCKLRKSLYGLK 226
           NGDL+EEIYM  P G+      S   N VC L+KS+YGLK
Sbjct: 204 NGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLK 240

[Close]

BLAST of Cmc09g0249321 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-16
Identity = 38/105 (36.19%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 68  IDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVNLPMGNKPIRCKWIFKRKKK 127
           I ++PK+    + +++   W +A++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKS---VIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKARLMVVGYTQKQDIDYFDTYSPITKITTIRALIALA 173
            +G+++R KARL+  G+ Q++ I + +TYSP+ +  TIR ++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc09g0249321 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	2.5e-110	90.22	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042080.1	4.6e-80	90.48	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-cop...	[more]
KAA0038001.1	4.5e-75	88.68	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	5.9e-75	86.14	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAD6453934.1	9.4e-73	61.99	hypothetical protein E3N88_08640 [Mikania micrantha]	[more]

BLAST of Cmc09g0249321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-42	46.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	2.0e-33	44.30	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.7e-32	43.04	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	8.3e-32	38.05	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	1.2e-14	36.19	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc09g0249321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	1.2e-110	90.22	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFH9	2.2e-80	90.48	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T8N6	2.2e-75	88.68	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T166	2.8e-75	86.14	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5N6PGV2	4.5e-73	61.99	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]

BLAST of Cmc09g0249321 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.2e-39	45.63	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	8.6e-16	36.19	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 101..225 e-value: 8.3E-45 score: 153.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 70..225
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 101..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0249321.1	Cmc09g0249321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding