Cmc09g0248901 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0248901
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr09: 14467705 .. 14468232 (+)
RNA-Seq Expression	Cmc09g0248901
Synteny	Cmc09g0248901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAACAAGAAATGATGAAGGTGTTTGAGATGACTGATCTAGGTTTGATGTATTACTTCCTAGAAATGGAGATTCAACAAAAGCAGAATAAAATATTTCTCTATCAAAAGAAGTGTGTAAGAGAGATATTGAGGAGGTTTAATATGGAGGAGTGTAAAAGTGTGAACACTCCAATGATTCAAAAGAAGAAGTTGCAAAAGAATGATAGGGAGGAACCTGCCGATGAAAATGTGTATAGAAGTCTAGTTGGATGCTTCGTGTATCTCACATCCACTATACCTGACATTATGTACATTGTAAGTGTCTTATATAGATTTCTTCACTTTCCAAGCAAGAATCAAATGGTTGCTGGAAAAAGTGTTCTGAGATATCTAAAAGGCACATTATCTTTTGGGATCGAATTTAGTAAAGTTGAAAATTTTGAGTTGAAAGGCTATTCGGATAGTGATTGGGCTGGGTCATTGGATGATATGAAGAGCACCTCTAGTTATTATTTCACCTTTGGCTCAAGATGTTTCTCATAG

mRNA sequence

ATGATCAAACAAGAAATGATGAAGGTGTTTGAGATGACTGATCTAGGTTTGATGTATTACTTCCTAGAAATGGAGATTCAACAAAAGCAGAATAAAATATTTCTCTATCAAAAGAAGTGTGTAAGAGAGATATTGAGGAGGTTTAATATGGAGGAGTGTAAAAGTGTGAACACTCCAATGATTCAAAAGAAGAAGTTGCAAAAGAATGATAGGGAGGAACCTGCCGATGAAAATGTGTATAGAAGTCTAGTTGGATGCTTCGTGTATCTCACATCCACTATACCTGACATTATGTACATTGTAAGTGTCTTATATAGATTTCTTCACTTTCCAAGCAAGAATCAAATGGTTGCTGGAAAAAGTGTTCTGAGATATCTAAAAGGCACATTATCTTTTGGGATCGAATTTAGTAAAGTTGAAAATTTTGAGTTGAAAGGCTATTCGGATAGTGATTGGGCTGGGTCATTGGATGATATGAAGAGCACCTCTAGTTATTATTTCACCTTTGGCTCAAGATGTTTCTCATAG

Coding sequence (CDS)

ATGATCAAACAAGAAATGATGAAGGTGTTTGAGATGACTGATCTAGGTTTGATGTATTACTTCCTAGAAATGGAGATTCAACAAAAGCAGAATAAAATATTTCTCTATCAAAAGAAGTGTGTAAGAGAGATATTGAGGAGGTTTAATATGGAGGAGTGTAAAAGTGTGAACACTCCAATGATTCAAAAGAAGAAGTTGCAAAAGAATGATAGGGAGGAACCTGCCGATGAAAATGTGTATAGAAGTCTAGTTGGATGCTTCGTGTATCTCACATCCACTATACCTGACATTATGTACATTGTAAGTGTCTTATATAGATTTCTTCACTTTCCAAGCAAGAATCAAATGGTTGCTGGAAAAAGTGTTCTGAGATATCTAAAAGGCACATTATCTTTTGGGATCGAATTTAGTAAAGTTGAAAATTTTGAGTTGAAAGGCTATTCGGATAGTGATTGGGCTGGGTCATTGGATGATATGAAGAGCACCTCTAGTTATTATTTCACCTTTGGCTCAAGATGTTTCTCATAG

Protein sequence

MIKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS

Homology

[Close]

BLAST of Cmc09g0248901 vs. NCBI nr
Match: XP_022151647.1 (uncharacterized protein LOC111019555 [Momordica charantia])

HSP 1 Score: 278.1 bits (710), Expect = 5.2e-71
Identity = 141/175 (80.57%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MIKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPM 60
           + KQEMMKVFEM DLGLM+YFL MEIQQ QN++FL QKK +REIL+RFNMEECKSVNTPM
Sbjct: 50  VFKQEMMKVFEMVDLGLMHYFLGMEIQQGQNEVFLCQKKYMREILKRFNMEECKSVNTPM 109

Query: 61  IQKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGK 120
           +QK+KLQK+D E+P DENVYRSLVGC +YLTST PDIMY VSVL RFLH  SKN MVAGK
Sbjct: 110 VQKEKLQKDDEEDPTDENVYRSLVGCLMYLTSTKPDIMYTVSVLSRFLHCASKNHMVAGK 169

Query: 121 SVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
            VLRYLKGTLSFGI+++KVENFEL+GYSDSDWAGSLDDMKSTS Y FTFGS CFS
Sbjct: 170 RVLRYLKGTLSFGIKYNKVENFELQGYSDSDWAGSLDDMKSTSGYCFTFGSGCFS 224

[Close]

BLAST of Cmc09g0248901 vs. NCBI nr
Match: XP_038885821.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-70
Identity = 142/175 (81.14%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MIKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPM 60
           + K+EMMKVFEMTDLG M+YFL MEIQQ+QN++ L QKK VREIL+ FNMEECKSVNTPM
Sbjct: 50  IFKKEMMKVFEMTDLGPMHYFLGMEIQQRQNEMLLCQKKYVREILKMFNMEECKSVNTPM 109

Query: 61  IQKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGK 120
           IQKKKLQKN+ EEP DENVYRSLVGCF+YLTS  PDIMYIVSVL RFLH PSKN MVAGK
Sbjct: 110 IQKKKLQKNNGEEPTDENVYRSLVGCFMYLTSIRPDIMYIVSVLSRFLHCPSKNNMVAGK 169

Query: 121 SVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
            V++YLKGTLSFGI+FSKVENF+L+GYSDSDWAG LDDMKSTS Y FTFGS CFS
Sbjct: 170 RVMKYLKGTLSFGIKFSKVENFKLQGYSDSDWAGLLDDMKSTSGYCFTFGSGCFS 224

[Close]

BLAST of Cmc09g0248901 vs. NCBI nr
Match: XP_022154407.1 (uncharacterized protein LOC111021684 [Momordica charantia])

HSP 1 Score: 245.4 bits (625), Expect = 3.8e-61
Identity = 126/158 (79.75%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 18  MYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQKKKLQKNDREEPADE 77
           M+YFL MEIQQ QN++FL QKK +REIL+RFNME+CKSVNTPMIQK+KLQK+D EEPAD+
Sbjct: 1   MHYFLGMEIQQGQNEVFLCQKKYMREILKRFNMEKCKSVNTPMIQKEKLQKDDGEEPADQ 60

Query: 78  NVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSVLRYLKGTLSFGIEFS 137
           NVYRSLVGC +YLTST PDIMY VSVL RFLH  SKN MVAGK VLRYLKG LSFGI+++
Sbjct: 61  NVYRSLVGCVMYLTSTRPDIMYTVSVLSRFLHCASKNHMVAGKRVLRYLKGLLSFGIKYN 120

Query: 138 KVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
           KVENFEL+GYSDSDWAGSLDDMKSTS Y FTFGS  FS
Sbjct: 121 KVENFELQGYSDSDWAGSLDDMKSTSGYCFTFGSGYFS 158

[Close]

BLAST of Cmc09g0248901 vs. NCBI nr
Match: XP_022155095.1 (uncharacterized protein LOC111022227 [Momordica charantia])

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-60
Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0


Query: 12  MTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQKKKLQKNDR 71
           MTDLGLM+YFL MEIQQ Q ++FLYQKK +REIL+ FNMEECKSVNT MIQK+KLQK+D 
Sbjct: 1   MTDLGLMHYFLGMEIQQGQTEVFLYQKKYMREILKMFNMEECKSVNTLMIQKEKLQKDDG 60

Query: 72  EEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSVLRYLKGTLS 131
           ++P DENVY+SLVGC +YLTST PDIMY V VL RFLH  SKN MVA   VLRYLKGTLS
Sbjct: 61  KKPVDENVYKSLVGCLMYLTSTRPDIMYTVGVLCRFLHCASKNHMVARMIVLRYLKGTLS 120

Query: 132 FGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
           FGI+FSK ENFEL+GYSDSDWAGSLDDMKS SSY FTFGS CFS
Sbjct: 121 FGIKFSK-ENFELQGYSDSDWAGSLDDMKSISSYCFTFGSGCFS 163

[Close]

BLAST of Cmc09g0248901 vs. NCBI nr
Match: KAA0039658.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ95542.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-60
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MIKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPM 60
           M KQEMM +F+MTDLGLMYYFL MEI+QKQN+IFL QKKCVREILRRFNME+CKS NT +
Sbjct: 215 MFKQEMMMMFKMTDLGLMYYFLGMEIRQKQNEIFLCQKKCVREILRRFNMEKCKSANTSV 274

Query: 61  IQKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGK 120
           I K+KLQKNDR+EPA+ENVY SLV C +YLTST  DIMY +SVL  FLHFPSKN MVAGK
Sbjct: 275 ILKEKLQKNDRKEPANENVYISLVRCLIYLTSTGLDIMYTISVLSIFLHFPSKNHMVAGK 334

Query: 121 SVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMK 161
            ++RYLKGT+SFGI+FSKVENFELK  +DSDW GSLDDM+
Sbjct: 335 RIMRYLKGTMSFGIKFSKVENFELKNSADSDWVGSLDDMR 374

[Close]

BLAST of Cmc09g0248901 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 105.1 bits (261), Expect = 8.0e-22
Identity = 67/168 (39.88%), Postives = 100/168 (59.52%), Query Frame = 0


Query: 3    KQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQ 62
            K+ +M+ F MTDL  + +F+ + I+ +++KI+L Q   V++IL +FNME C +V+TP+  
Sbjct: 1105 KRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPS 1164

Query: 63   KKKLQKNDREEPADENVYRSLVGCFVY-LTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKS 122
            K   +  + +E  +    RSL+GC +Y +  T PD+   V++L R+    +       K 
Sbjct: 1165 KINYELLNSDEDCN-TPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKR 1224

Query: 123  VLRYLKGTLSFGIEFSKVENFELK--GYSDSDWAGSLDDMKSTSSYYF 168
            VLRYLKGT+   + F K   FE K  GY DSDWAGS  D KST+ Y F
Sbjct: 1225 VLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLF 1271

[Close]

BLAST of Cmc09g0248901 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-21
Identity = 61/161 (37.89%), Postives = 85/161 (52.80%), Query Frame = 0


Query: 10   FEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQKKKLQKN 69
            F + D   ++YFL +E ++    + L Q++ + ++L R NM   K V TPM    KL   
Sbjct: 1175 FSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLY 1234

Query: 70   DREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSVLRYLKGT 129
               +  D   YR +VG   YL  T PDI Y V+ L +F+H P++  + A K +LRYL GT
Sbjct: 1235 SGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGT 1294

Query: 130  LSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFG 171
             + GI   K     L  YSD+DWAG  DD  ST+ Y    G
Sbjct: 1295 PNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLG 1335

[Close]

BLAST of Cmc09g0248901 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 58/153 (37.91%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 18   MYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQKKKLQKNDREEPADE 77
            ++YFL +E ++    + L Q++   ++L R NM   K V TPM    KL  +   +  D 
Sbjct: 1166 LHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDP 1225

Query: 78   NVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSVLRYLKGTLSFGIEFS 137
              YR +VG   YL  T PD+ Y V+ L +++H P+ +   A K VLRYL GT   GI   
Sbjct: 1226 TEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLK 1285

Query: 138  KVENFELKGYSDSDWAGSLDDMKSTSSYYFTFG 171
            K     L  YSD+DWAG  DD  ST+ Y    G
Sbjct: 1286 KGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLG 1318

[Close]

BLAST of Cmc09g0248901 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-19
Identity = 68/183 (37.16%), Postives = 98/183 (53.55%), Query Frame = 0


Query: 2    IKQEMMKVFEMTDLGLMYYFLEMEI--QQKQNKIFLYQKKCVREILRRFNMEECKSVNTP 61
            +K ++ K F+M DLG     L M+I  ++   K++L Q+K +  +L RFNM+  K V+TP
Sbjct: 1025 LKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTP 1084

Query: 62   MIQKKKLQKNDREEPADEN------VYRSLVGCFVY-LTSTIPDIMYIVSVLYRFLHFPS 121
            +    KL K       +E        Y S VG  +Y +  T PDI + V V+ RFL  P 
Sbjct: 1085 LAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPG 1144

Query: 122  KNQMVAGKSVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSR 176
            K    A K +LRYL+GT    + F   +   LKGY+D+D AG +D+ KS++ Y FTF   
Sbjct: 1145 KEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGG 1204

[Close]

BLAST of Cmc09g0248901 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-19
Identity = 59/175 (33.71%), Postives = 94/175 (53.71%), Query Frame = 0


Query: 1   MIKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPM 60
           M+  ++   F M DLG ++YFL ++I+   + +FL Q K   +IL    M +CK ++TP+
Sbjct: 22  MLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL 81

Query: 61  IQKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGK 120
             K     +  + P D + +RS+VG   YLT T PDI Y V+++ + +H P+       K
Sbjct: 82  PLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLK 141

Query: 121 SVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
            VLRY+KGT+  G+   K     ++ + DSDWAG     +ST+ +    G    S
Sbjct: 142 RVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIIS 195

[Close]

BLAST of Cmc09g0248901 vs. ExPASy TrEMBL
Match: A0A6J1DE27 (uncharacterized protein LOC111019555 OS=Momordica charantia OX=3673 GN=LOC111019555 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.5e-71
Identity = 141/175 (80.57%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MIKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPM 60
           + KQEMMKVFEM DLGLM+YFL MEIQQ QN++FL QKK +REIL+RFNMEECKSVNTPM
Sbjct: 50  VFKQEMMKVFEMVDLGLMHYFLGMEIQQGQNEVFLCQKKYMREILKRFNMEECKSVNTPM 109

Query: 61  IQKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGK 120
           +QK+KLQK+D E+P DENVYRSLVGC +YLTST PDIMY VSVL RFLH  SKN MVAGK
Sbjct: 110 VQKEKLQKDDEEDPTDENVYRSLVGCLMYLTSTKPDIMYTVSVLSRFLHCASKNHMVAGK 169

Query: 121 SVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
            VLRYLKGTLSFGI+++KVENFEL+GYSDSDWAGSLDDMKSTS Y FTFGS CFS
Sbjct: 170 RVLRYLKGTLSFGIKYNKVENFELQGYSDSDWAGSLDDMKSTSGYCFTFGSGCFS 224

[Close]

BLAST of Cmc09g0248901 vs. ExPASy TrEMBL
Match: A0A6J1DLL2 (uncharacterized protein LOC111021684 OS=Momordica charantia OX=3673 GN=LOC111021684 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 126/158 (79.75%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 18  MYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQKKKLQKNDREEPADE 77
           M+YFL MEIQQ QN++FL QKK +REIL+RFNME+CKSVNTPMIQK+KLQK+D EEPAD+
Sbjct: 1   MHYFLGMEIQQGQNEVFLCQKKYMREILKRFNMEKCKSVNTPMIQKEKLQKDDGEEPADQ 60

Query: 78  NVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSVLRYLKGTLSFGIEFS 137
           NVYRSLVGC +YLTST PDIMY VSVL RFLH  SKN MVAGK VLRYLKG LSFGI+++
Sbjct: 61  NVYRSLVGCVMYLTSTRPDIMYTVSVLSRFLHCASKNHMVAGKRVLRYLKGLLSFGIKYN 120

Query: 138 KVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
           KVENFEL+GYSDSDWAGSLDDMKSTS Y FTFGS  FS
Sbjct: 121 KVENFELQGYSDSDWAGSLDDMKSTSGYCFTFGSGYFS 158

[Close]

BLAST of Cmc09g0248901 vs. ExPASy TrEMBL
Match: A0A6J1DLG6 (uncharacterized protein LOC111022227 OS=Momordica charantia OX=3673 GN=LOC111022227 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.3e-61
Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0


Query: 12  MTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQKKKLQKNDR 71
           MTDLGLM+YFL MEIQQ Q ++FLYQKK +REIL+ FNMEECKSVNT MIQK+KLQK+D 
Sbjct: 1   MTDLGLMHYFLGMEIQQGQTEVFLYQKKYMREILKMFNMEECKSVNTLMIQKEKLQKDDG 60

Query: 72  EEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSVLRYLKGTLS 131
           ++P DENVY+SLVGC +YLTST PDIMY V VL RFLH  SKN MVA   VLRYLKGTLS
Sbjct: 61  KKPVDENVYKSLVGCLMYLTSTRPDIMYTVGVLCRFLHCASKNHMVARMIVLRYLKGTLS 120

Query: 132 FGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
           FGI+FSK ENFEL+GYSDSDWAGSLDDMKS SSY FTFGS CFS
Sbjct: 121 FGIKFSK-ENFELQGYSDSDWAGSLDDMKSISSYCFTFGSGCFS 163

[Close]

BLAST of Cmc09g0248901 vs. ExPASy TrEMBL
Match: A0A5D3B6R7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00360 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 9.0e-61
Identity = 123/160 (76.88%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MIKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPM 60
           M KQEMM +F+MTDLGLMYYFL MEI+QKQN+IFL QKKCVREILRRFNME+CKS NT +
Sbjct: 215 MFKQEMMMMFKMTDLGLMYYFLGMEIRQKQNEIFLCQKKCVREILRRFNMEKCKSANTSV 274

Query: 61  IQKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGK 120
           I K+KLQKNDR+EPA+ENVY SLV C +YLTST  DIMY +SVL  FLHFPSKN MVAGK
Sbjct: 275 ILKEKLQKNDRKEPANENVYISLVRCLIYLTSTGLDIMYTISVLSIFLHFPSKNHMVAGK 334

Query: 121 SVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMK 161
            ++RYLKGT+SFGI+FSKVENFELK  +DSDW GSLDDM+
Sbjct: 335 RIMRYLKGTMSFGIKFSKVENFELKNSADSDWVGSLDDMR 374

[Close]

BLAST of Cmc09g0248901 vs. ExPASy TrEMBL
Match: A0A314KJ27 (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Nicotiana attenuata OX=49451 GN=POLX_38 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.2e-50
Identity = 100/173 (57.80%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 3   KQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMIQ 62
           KQ+MM+ FEMTDLGL+ YFL MEI+ +++++F+ Q K  +EIL++F ME CK++NTPM Q
Sbjct: 105 KQDMMQAFEMTDLGLVTYFLGMEIKPEKDEVFICQNKYAKEILKKFGMENCKAMNTPMNQ 164

Query: 63  KKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSV 122
           K+KL+K+D  E  DE+ +RS++GC +YLT+T PDI+Y VSVL RF+H PS+  + A K V
Sbjct: 165 KEKLRKDDGAEKVDESYFRSIIGCLMYLTATRPDILYAVSVLSRFMHCPSEVHLKAAKRV 224

Query: 123 LRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
           +RY+KGT+++G++F +  N EL GYSDSDW GSLDDMKSTS Y F+ GSR FS
Sbjct: 225 VRYIKGTINYGVKFHRSRNMELFGYSDSDWGGSLDDMKSTSGYCFSLGSRMFS 277

[Close]

BLAST of Cmc09g0248901 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-20
Identity = 59/175 (33.71%), Postives = 94/175 (53.71%), Query Frame = 0


Query: 1   MIKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPM 60
           M+  ++   F M DLG ++YFL ++I+   + +FL Q K   +IL    M +CK ++TP+
Sbjct: 22  MLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL 81

Query: 61  IQKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGK 120
             K     +  + P D + +RS+VG   YLT T PDI Y V+++ + +H P+       K
Sbjct: 82  PLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLK 141

Query: 121 SVLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
            VLRY+KGT+  G+   K     ++ + DSDWAG     +ST+ +    G    S
Sbjct: 142 RVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIIS 195

[Close]

BLAST of Cmc09g0248901 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 49/174 (28.16%), Postives = 83/174 (47.70%), Query Frame = 0


Query: 2   IKQEMMKVFEMTDLGLMYYFLEMEIQQKQNKIFLYQKKCVREILRRFNMEECKSVNTPMI 61
           +K ++   F++ DLG + YFL +EI +    I + Q+K   ++L    +  CK  + PM 
Sbjct: 300 LKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMD 359

Query: 62  QKKKLQKNDREEPADENVYRSLVGCFVYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKS 121
                  +   +  D   YR L+G  +YL  T  DI + V+ L +F   P      A   
Sbjct: 360 PSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMK 419

Query: 122 VLRYLKGTLSFGIEFSKVENFELKGYSDSDWAGSLDDMKSTSSYYFTFGSRCFS 176
           +L Y+KGT+  G+ +S     +L+ +SD+ +    D  +ST+ Y    G+   S
Sbjct: 420 ILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLIS 473

[Close]

BLAST of Cmc09g0248901 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-08
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 88  VYLTSTIPDIMYIVSVLYRFLHFPSKNQMVAGKSVLRYLKGTLSFGIEFSKVENFELKGY 147
           +YLT T PD+ + V+ L +F       QM A   VL Y+KGT+  G+ +S   + +LK +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 148 SDSDWAGSLDDMKSTSSY 166
           +DSDWA   D  +S + +
Sbjct: 61  ADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Cmc09g0248901 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151647.1	5.2e-71	80.57	uncharacterized protein LOC111019555 [Momordica charantia]	[more]
XP_038885821.1	1.2e-70	81.14	uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]	[more]
XP_022154407.1	3.8e-61	79.75	uncharacterized protein LOC111021684 [Momordica charantia]	[more]
XP_022155095.1	1.1e-60	78.05	uncharacterized protein LOC111022227 [Momordica charantia]	[more]
KAA0039658.1	1.9e-60	76.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc09g0248901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	8.0e-22	39.88	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.8e-21	37.89	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.7e-19	37.91	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.7e-19	37.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	2.8e-19	33.71	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc09g0248901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE27	2.5e-71	80.57	uncharacterized protein LOC111019555 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DLL2	1.8e-61	79.75	uncharacterized protein LOC111021684 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1DLG6	5.3e-61	78.05	uncharacterized protein LOC111022227 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5D3B6R7	9.0e-61	76.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A314KJ27	3.2e-50	57.80	Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Nicoti...	[more]

BLAST of Cmc09g0248901 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.0e-20	33.71	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	1.1e-13	28.16	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	3.9e-08	37.18	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..61 e-value: 2.5E-8 score: 33.8
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 55..167
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 55..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0248901.1	Cmc09g0248901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0050896	response to stimulus
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding