Cmc09g0248331 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0248331
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr09: 13717291 .. 13717905 (+)
RNA-Seq Expression	Cmc09g0248331
Synteny	Cmc09g0248331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAGAATAGCTGAAACTCAGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGAACTTAAGACTCGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAAAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTTCTTGTGATTCCTTTCTTGAAGGAAAAATGACCAAGAGATCTTTTACTGGAAAAAGTCTTAGAGCCAAAACACCTTTAGAGCTCGTACATTCGGACCTTTGTGGACCAATGAATGTTAAAGCTCGAGGAGGATACGACGAATATTTTATTAGTTTTATTGATGATTATTCGAGGTACGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAGGCTGAAGTTGAAAATGAATCAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGCGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTTTGCACCTAATACGCCTCAACACAATGGTATATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTTGCTCTATGATGGGTTTTGCTCAGTTGCCAGATTCTTTCTAG

mRNA sequence

ATGTTTAGAATAGCTGAAACTCAGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGAACTTAAGACTCGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAAAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTTCTTGTGATTCCTTTCTTGAAGGAAAAATGACCAAGAGATCTTTTACTGGAAAAAGTCTTAGAGCCAAAACACCTTTAGAGCTCGTACATTCGGACCTTTGTGGACCAATGAATGTTAAAGCTCGAGGAGGATACGACGAATATTTTATTAGTTTTATTGATGATTATTCGAGGTACGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAGGCTGAAGTTGAAAATGAATCAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGCGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTTTGCACCTAATACGCCTCAACACAATGGTATATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTTGCTCTATGATGGGTTTTGCTCAGTTGCCAGATTCTTTCTAG

Coding sequence (CDS)

ATGTTTAGAATAGCTGAAACTCAGAATAAAAGACAAAAAGTTTCTTCCAATGCCTTCTTATGGAACTTAAGACTCGGTCACATTAATCTCAATAGGATTGGGAGATTGGTTAAAAGTGGACTTCTAAGTCAGTTAGAAGATAACTCTTTACCTTCTTGTGATTCCTTTCTTGAAGGAAAAATGACCAAGAGATCTTTTACTGGAAAAAGTCTTAGAGCCAAAACACCTTTAGAGCTCGTACATTCGGACCTTTGTGGACCAATGAATGTTAAAGCTCGAGGAGGATACGACGAATATTTTATTAGTTTTATTGATGATTATTCGAGGTACGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAGTTCAAAGAGGCTGAAGTTGAAAATGAATCAGGTAAAACAATAAAGACACTTCGATCAGATCGAGGTGGAGAGTATATGGATTTGCGATTCCAAGACTATTTGATAGAACATGGAATCCAATCACAACTCTTTGCACCTAATACGCCTCAACACAATGGTATATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTTGCTCTATGATGGGTTTTGCTCAGTTGCCAGATTCTTTCTAG

Protein sequence

MFRIAETQNKRQKVSSNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNKSDSFEKFKEAEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGFAQLPDSF

Homology

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BLAST of Cmc09g0248331 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91
Identity = 174/206 (84.47%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVSSNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGK 60
           MFR  ETQNK+QKVSSNA+LW+LRLGHINLNRI RLVKSG+L+QLEDNSLP C+S LEGK
Sbjct: 425 MFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGK 484

Query: 61  MTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNKS 120
           MTKRSFTGK LRAK PLELVHSDLCGPMNVKARGGY EYFISFIDD+SRYGHVYL+ +KS
Sbjct: 485 MTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGY-EYFISFIDDFSRYGHVYLLHHKS 544

Query: 121 DSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNG 180
           +SFEKFKE  AEVENE GKTIKTLRSDRGGEYMD +FQDYLIE GIQSQL AP+TPQ NG
Sbjct: 545 ESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNG 604

Query: 181 ISERRNRTLLDMVCSMMGFAQLPDSF 205
           +SERRNRTLLDMV SMM +AQLPDSF
Sbjct: 605 VSERRNRTLLDMVRSMMSYAQLPDSF 629

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BLAST of Cmc09g0248331 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 1.0e-81
Identity = 157/208 (75.48%), Postives = 180/208 (86.54%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLE 60
           MFR A TQNKRQ++S  +N +LW+LRLGHINL+RIGRLVK+GLL++L+D SLP C+S LE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQN 120
           GKMTKR FTGK  RAK PLEL+HSDLCGPMNVKARGG+ EYFISFIDDYSRYG++YL+++
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGF-EYFISFIDDYSRYGYLYLMEH 448

Query: 121 KSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQH 180
           KS++ EKFKE   EVEN   K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ 
Sbjct: 449 KSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQ 508

Query: 181 NGISERRNRTLLDMVCSMMGFAQLPDSF 205
           NG+SERRNRTLLDMV SMM +AQLP SF
Sbjct: 509 NGVSERRNRTLLDMVRSMMSYAQLPSSF 535

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BLAST of Cmc09g0248331 vs. NCBI nr
Match: KAA0060534.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.4 bits (799), Expect = 2.9e-81
Identity = 157/208 (75.48%), Postives = 178/208 (85.58%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVSS--NAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLE 60
           MFR A TQNKRQ++SS  N +LW+LRLGHINL+RIGRLVK+GLL++LED+SLP C+S LE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  GKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQN 120
           GKMTKR FTGK  RAK PLEL+HSDLCGPMNVKA GG+ EYFISFIDDYS YG++YLI++
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGF-EYFISFIDDYSMYGYLYLIEH 420

Query: 121 KSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQH 180
           KS++ EKFKE   EVEN   K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ 
Sbjct: 421 KSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQ 480

Query: 181 NGISERRNRTLLDMVCSMMGFAQLPDSF 205
           NG+SERRNRTLLDMV SMM + QLP SF
Sbjct: 481 NGVSERRNRTLLDMVHSMMSYVQLPSSF 507

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BLAST of Cmc09g0248331 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 1.1e-80
Identity = 155/208 (74.52%), Postives = 179/208 (86.06%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLE 60
           MFR A TQNKRQ++S  +N +LW+LRL HINL+RIGRLVK+GLL++L+D+SLP C+S LE
Sbjct: 299 MFRTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLE 358

Query: 61  GKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQN 120
           GKMTKR FTGK  RAK PLEL+HSDLCGPMNVKARGG+ EYFISFIDDYSRYG++YL+++
Sbjct: 359 GKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGF-EYFISFIDDYSRYGYLYLMEH 418

Query: 121 KSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQH 180
           K ++ EKFKE   EVEN   K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ 
Sbjct: 419 KYEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQ 478

Query: 181 NGISERRNRTLLDMVCSMMGFAQLPDSF 205
           NG+SERRNRTLLDMV SMM +AQLP SF
Sbjct: 479 NGVSERRNRTLLDMVRSMMSYAQLPSSF 505

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BLAST of Cmc09g0248331 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.6e-79
Identity = 154/208 (74.04%), Postives = 176/208 (84.62%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLE 60
           MFR A TQNKRQ++S  +N +LW+LRLGHINL+RIGRLVK GLL++L+D SLP C+S LE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQN 120
           GKMTKR FTGK  RAK PLEL+HSDLCGPMNVKARG + EYFISFIDDYSRYG++YL+++
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSF-EYFISFIDDYSRYGYLYLMEH 448

Query: 121 KSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQH 180
           KS++ EKFKE   EVEN   K IK  RSDRGGEYMDL FQDY+IEHGIQSQL AP TPQ 
Sbjct: 449 KSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQ 508

Query: 181 NGISERRNRTLLDMVCSMMGFAQLPDSF 205
           NG+SERRNRTLLDMV SMM +AQLP SF
Sbjct: 509 NGVSERRNRTLLDMVRSMMSYAQLPSSF 535

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BLAST of Cmc09g0248331 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.4e-38
Identity = 81/187 (43.32%), Postives = 121/187 (64.71%), Query Frame = 0


Query: 20  LWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLEL 79
           LW+ R+GH++   +  L K  L+S  +  ++  CD  L GK  + SF   S R    L+L
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDL 483

Query: 80  VHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNKSDSFEKFKE--AEVENESGK 139
           V+SD+CGPM +++ GG ++YF++FIDD SR   VY+++ K   F+ F++  A VE E+G+
Sbjct: 484 VYSDVCGPMEIESMGG-NKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGR 543

Query: 140 TIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMGF 199
            +K LRSD GGEY    F++Y   HGI+ +   P TPQHNG++ER NRT+++ V SM+  
Sbjct: 544 KLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRM 603

Query: 200 AQLPDSF 205
           A+LP SF
Sbjct: 604 AKLPKSF 609

[Close]

BLAST of Cmc09g0248331 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 106.7 bits (265), Expect = 3.2e-22
Identity = 71/204 (34.80%), Postives = 105/204 (51.47%), Query Frame = 0


Query: 13  KVSSNAFLWNLRLGHIN------LNRIGRLVKSGLLSQLEDNSLPSCDSFLEGKMTKRSF 72
           K  +N  LW+ R GHI+      + R        LL+ LE  S   C+  L GK  +  F
Sbjct: 410 KHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLE-LSCEICEPCLNGKQARLPF 469

Query: 73  TGKSLRAKT----PLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNKSDS 132
             K L+ KT    PL +VHSD+CGP+          YF+ F+D ++ Y   YLI+ KSD 
Sbjct: 470 --KQLKDKTHIKRPLFVVHSDVCGPITPVTLDD-KNYFVIFVDQFTHYCVTYLIKYKSDV 529

Query: 133 FEKFKEAEVENESGKTIKT--LRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGIS 192
           F  F++   ++E+   +K   L  D G EY+    + + ++ GI   L  P+TPQ NG+S
Sbjct: 530 FSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVS 589

Query: 193 ERRNRTLLDMVCSMMGFAQLPDSF 205
           ER  RT+ +   +M+  A+L  SF
Sbjct: 590 ERMIRTITEKARTMVSGAKLDKSF 609

[Close]

BLAST of Cmc09g0248331 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 64/188 (34.04%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 21  WNLRLGHINLNRIGRLVKSGLLSQLE-DNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLEL 80
           W+ RLGH +L  +  ++ +  L  L   + L SC      K  K  F+  ++ +  PLE 
Sbjct: 446 WHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEY 505

Query: 81  VHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNKS---DSFEKFKEAEVENESG 140
           ++SD+     + +   Y  Y++ F+D ++RY  +Y ++ KS   D+F  FK   VEN   
Sbjct: 506 IYSDVWS-SPILSIDNY-RYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSL-VENRFQ 565

Query: 141 KTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG 200
             I TL SD GGE++ LR  DYL +HGI      P+TP+HNG+SER++R +++M  +++ 
Sbjct: 566 TRIGTLYSDNGGEFVVLR--DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLS 625

Query: 201 FAQLPDSF 205
            A +P ++
Sbjct: 626 HASVPKTY 628

[Close]

BLAST of Cmc09g0248331 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 57/188 (30.32%), Postives = 102/188 (54.26%), Query Frame = 0


Query: 21  WNLRLGHINLNRIGRLVKSGLLSQLE-DNSLPSCDSFLEGKMTKRSFTGKSLRAKTPLEL 80
           W+ RLGH   + +  ++ +  LS L   +   SC   L  K  K  F+  ++ +  PLE 
Sbjct: 467 WHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEY 526

Query: 81  VHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNKS---DSFEKFKEAEVENESG 140
           ++SD+     + +   Y  Y++ F+D ++RY  +Y ++ KS   ++F  FK   +EN   
Sbjct: 527 IYSDVWS-SPILSHDNY-RYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNL-LENRFQ 586

Query: 141 KTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNGISERRNRTLLDMVCSMMG 200
             I T  SD GGE++ L   +Y  +HGI      P+TP+HNG+SER++R +++   +++ 
Sbjct: 587 TRIGTFYSDNGGEFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLS 646

Query: 201 FAQLPDSF 205
            A +P ++
Sbjct: 647 HASIPKTY 649

[Close]

BLAST of Cmc09g0248331 vs. ExPASy Swiss-Prot
Match: Q07791 (Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR3 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-12
Identity = 54/210 (25.71%), Postives = 101/210 (48.10%), Query Frame = 0


Query: 9   NKRQKVSSNAF-LWNLRLGHINLNRIGRLVKSGLLSQLEDNSLP-------SCDSFLEGK 68
           NK + V+   + L +  LGH N   I + +K   ++ L+++ +         C   L GK
Sbjct: 581 NKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGK 640

Query: 69  MTK-RSFTGKSLR---AKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLI 128
            TK R   G  L+   +  P + +H+D+ GP++   +     YFISF D+ +R+  VY +
Sbjct: 641 STKHRHIKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSA-PSYFISFTDEKTRFQWVYPL 700

Query: 129 QNKSDS--FEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPN 188
            ++ +      F    A ++N+    +  ++ DRG EY +     +    GI +      
Sbjct: 701 HDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTA 760

Query: 189 TPQHNGISERRNRTLLDMVCSMMGFAQLPD 203
             + +G++ER NRTLL+   +++  + LP+
Sbjct: 761 DSRAHGVAERLNRTLLNDCRTLLHCSGLPN 789

[Close]

BLAST of Cmc09g0248331 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.2e-92
Identity = 174/206 (84.47%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVSSNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLEGK 60
           MFR  ETQNK+QKVSSNA+LW+LRLGHINLNRI RLVKSG+L+QLEDNSLP C+S LEGK
Sbjct: 425 MFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGK 484

Query: 61  MTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQNKS 120
           MTKRSFTGK LRAK PLELVHSDLCGPMNVKARGGY EYFISFIDD+SRYGHVYL+ +KS
Sbjct: 485 MTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGY-EYFISFIDDFSRYGHVYLLHHKS 544

Query: 121 DSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQHNG 180
           +SFEKFKE  AEVENE GKTIKTLRSDRGGEYMD +FQDYLIE GIQSQL AP+TPQ NG
Sbjct: 545 ESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNG 604

Query: 181 ISERRNRTLLDMVCSMMGFAQLPDSF 205
           +SERRNRTLLDMV SMM +AQLPDSF
Sbjct: 605 VSERRNRTLLDMVRSMMSYAQLPDSF 629

[Close]

BLAST of Cmc09g0248331 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.9e-82
Identity = 157/208 (75.48%), Postives = 180/208 (86.54%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLE 60
           MFR A TQNKRQ++S  +N +LW+LRLGHINL+RIGRLVK+GLL++L+D SLP C+S LE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQN 120
           GKMTKR FTGK  RAK PLEL+HSDLCGPMNVKARGG+ EYFISFIDDYSRYG++YL+++
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGF-EYFISFIDDYSRYGYLYLMEH 448

Query: 121 KSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQH 180
           KS++ EKFKE   EVEN   K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ 
Sbjct: 449 KSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQ 508

Query: 181 NGISERRNRTLLDMVCSMMGFAQLPDSF 205
           NG+SERRNRTLLDMV SMM +AQLP SF
Sbjct: 509 NGVSERRNRTLLDMVRSMMSYAQLPSSF 535

[Close]

BLAST of Cmc09g0248331 vs. ExPASy TrEMBL
Match: A0A5D3BNE1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00410 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 157/208 (75.48%), Postives = 178/208 (85.58%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVSS--NAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLE 60
           MFR A TQNKRQ++SS  N +LW+LRLGHINL+RIGRLVK+GLL++LED+SLP C+S LE
Sbjct: 301 MFRTANTQNKRQRISSNNNTYLWHLRLGHINLDRIGRLVKNGLLNKLEDDSLPPCESCLE 360

Query: 61  GKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQN 120
           GKMTKR FTGK  RAK PLEL+HSDLCGPMNVKA GG+ EYFISFIDDYS YG++YLI++
Sbjct: 361 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKAIGGF-EYFISFIDDYSMYGYLYLIEH 420

Query: 121 KSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQH 180
           KS++ EKFKE   EVEN   K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ 
Sbjct: 421 KSEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQ 480

Query: 181 NGISERRNRTLLDMVCSMMGFAQLPDSF 205
           NG+SERRNRTLLDMV SMM + QLP SF
Sbjct: 481 NGVSERRNRTLLDMVHSMMSYVQLPSSF 507

[Close]

BLAST of Cmc09g0248331 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 5.4e-81
Identity = 155/208 (74.52%), Postives = 179/208 (86.06%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLE 60
           MFR A TQNKRQ++S  +N +LW+LRL HINL+RIGRLVK+GLL++L+D+SLP C+S LE
Sbjct: 299 MFRTANTQNKRQRISPNNNTYLWHLRLDHINLDRIGRLVKNGLLNKLKDDSLPPCESCLE 358

Query: 61  GKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQN 120
           GKMTKR FTGK  RAK PLEL+HSDLCGPMNVKARGG+ EYFISFIDDYSRYG++YL+++
Sbjct: 359 GKMTKRPFTGKDYRAKEPLELIHSDLCGPMNVKARGGF-EYFISFIDDYSRYGYLYLMEH 418

Query: 121 KSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQH 180
           K ++ EKFKE   EVEN   K IK LRSDRGGEYMDLRFQDY+IEHGIQSQL AP TPQ 
Sbjct: 419 KYEALEKFKEYKTEVENLLSKKIKILRSDRGGEYMDLRFQDYMIEHGIQSQLSAPGTPQQ 478

Query: 181 NGISERRNRTLLDMVCSMMGFAQLPDSF 205
           NG+SERRNRTLLDMV SMM +AQLP SF
Sbjct: 479 NGVSERRNRTLLDMVRSMMSYAQLPSSF 505

[Close]

BLAST of Cmc09g0248331 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 7.7e-80
Identity = 154/208 (74.04%), Postives = 176/208 (84.62%), Query Frame = 0


Query: 1   MFRIAETQNKRQKVS--SNAFLWNLRLGHINLNRIGRLVKSGLLSQLEDNSLPSCDSFLE 60
           MFR A TQNKRQ++S  +N +LW+LRLGHINL+RIGRLVK GLL++L+D SLP C+S LE
Sbjct: 329 MFRTANTQNKRQRISPNNNTYLWHLRLGHINLDRIGRLVKDGLLNKLKDVSLPPCESCLE 388

Query: 61  GKMTKRSFTGKSLRAKTPLELVHSDLCGPMNVKARGGYDEYFISFIDDYSRYGHVYLIQN 120
           GKMTKR FTGK  RAK PLEL+HSDLCGPMNVKARG + EYFISFIDDYSRYG++YL+++
Sbjct: 389 GKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGSF-EYFISFIDDYSRYGYLYLMEH 448

Query: 121 KSDSFEKFKE--AEVENESGKTIKTLRSDRGGEYMDLRFQDYLIEHGIQSQLFAPNTPQH 180
           KS++ EKFKE   EVEN   K IK  RSDRGGEYMDL FQDY+IEHGIQSQL AP TPQ 
Sbjct: 449 KSEALEKFKEYKTEVENLLSKKIKIFRSDRGGEYMDLIFQDYMIEHGIQSQLSAPGTPQQ 508

Query: 181 NGISERRNRTLLDMVCSMMGFAQLPDSF 205
           NG+SERRNRTLLDMV SMM +AQLP SF
Sbjct: 509 NGVSERRNRTLLDMVRSMMSYAQLPSSF 535

The following BLAST results are available for this feature:

BLAST of Cmc09g0248331 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.1e-91	84.47	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0025945.1	1.0e-81	75.48	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0060534.1	2.9e-81	75.48	gag/pol protein [Cucumis melo var. makuwa] >TYK00774.1 gag/pol protein [Cucumis ...	[more]
KAA0067938.1	1.1e-80	74.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035907.1	1.6e-79	74.04	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0248331 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-38	43.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.2e-22	34.80	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.6e-21	34.04	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.6e-18	30.32	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q07791	8.7e-12	25.71	Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc09g0248331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	5.2e-92	84.47	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	4.9e-82	75.48	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3BNE1	1.4e-81	75.48	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G0041...	[more]
A0A5A7VJG3	5.4e-81	74.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5A7T2V9	7.7e-80	74.04	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]

BLAST of Cmc09g0248331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 11..61 e-value: 1.1E-8 score: 34.8
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 75..174 e-value: 3.7E-11 score: 43.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 72..204 score: 19.705275
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 69..202 e-value: 3.5E-27 score: 97.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 65..178
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 65..178
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 71..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0248331.1	Cmc09g0248331.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding