Cmc09g0247541 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0247541
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr09: 12265314 .. 12266003 (+)
RNA-Seq Expression	Cmc09g0247541
Synteny	Cmc09g0247541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACGTATTCCCTATGCCTCAGCTGTGGGTAGCTTAATGTATGCTATGCTTTGCACTAGGCCAGACATTTGTTATGCAGTGGGAATAGTTAGTAGGTATCAGTCCAACCCAGGGTTAGACCACTGGACGACGGTTAAAATTATTTTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGAAGCTAAGGATTTGATCCTTACAGGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACATCGAGATCAGTGTTCACCTTAAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATATGTTGCTACTTGTGAAACAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGTCCATCACTCTATATTGTGATAACAGTGGGACAGTAGCCAATTCTAAAGAACCTCGCAGCCACAAACGAGGGAAACACATAGAGAGAAAGTATCACCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCACTTTGGAGCACAACATTGTTGATCCATTTAGGAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTAGAAAGTCTATGTCTACGAGATATGTACATTAGATAA

mRNA sequence

ATGAGACGTATTCCCTATGCCTCAGCTGTGGGTAGCTTAATGTATGCTATGCTTTGCACTAGGCCAGACATTTGTTATGCAGTGGGAATAGTTAGTAGGTATCAGTCCAACCCAGGGTTAGACCACTGGACGACGGTTAAAATTATTTTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGAAGCTAAGGATTTGATCCTTACAGGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACATCGAGATCAGTGTTCACCTTAAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATATGTTGCTACTTGTGAAACAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGTCCATCACTCTATATTGTGATAACAGTGGGACAGTAGCCAATTCTAAAGAACCTCGCAGCCACAAACGAGGGAAACACATAGAGAGAAAGTATCACCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCACTTTGGAGCACAACATTGTTGATCCATTTAGGAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTAGAAAGTCTATGTCTACGAGATATGTACATTAGATAA

Coding sequence (CDS)

ATGAGACGTATTCCCTATGCCTCAGCTGTGGGTAGCTTAATGTATGCTATGCTTTGCACTAGGCCAGACATTTGTTATGCAGTGGGAATAGTTAGTAGGTATCAGTCCAACCCAGGGTTAGACCACTGGACGACGGTTAAAATTATTTTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGAAGCTAAGGATTTGATCCTTACAGGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACATCGAGATCAGTGTTCACCTTAAATGGGGGAGCTGTAGTATGGCGTAGCATCAAGCAAGGATGCATTGCAGACTCTACAATGGAGGCTGAATATGTTGCTACTTGTGAAACAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGTCCATCACTCTATATTGTGATAACAGTGGGACAGTAGCCAATTCTAAAGAACCTCGCAGCCACAAACGAGGGAAACACATAGAGAGAAAGTATCACCTGATACGGGAGATTGTGCAACGAGGGGATGTGATCGTCACCAAGATCACTTTGGAGCACAACATTGTTGATCCATTTAGGAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTAGAAAGTCTATGTCTACGAGATATGTACATTAGATAA

Protein sequence

MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR

Homology

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BLAST of Cmc09g0247541 vs. NCBI nr
Match: KAA0062410.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK26571.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 451.1 bits (1159), Expect = 5.9e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 9   AVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYEAKDL 68
           AVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYEAKDL
Sbjct: 609 AVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYEAKDL 668

Query: 69  ILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCETAKE 128
           ILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCETAKE
Sbjct: 669 ILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCETAKE 728

Query: 129 AVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRG 188
           AVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRG
Sbjct: 729 AVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRG 788

Query: 189 DVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
           DVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR
Sbjct: 789 DVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 829

[Close]

BLAST of Cmc09g0247541 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 215/229 (93.89%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
            MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKI+ KYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 1066

Query: 61   LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVY AKDLILTGYTDSDFQTDKDSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
            A CE AKEAVWLRKFLHDLEVVPNMNL ITLYCDNSG VANSKEPRSHKRGKHIERKYHL
Sbjct: 1127 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
            IREIVQRGDVIVTKI  EHNI DPF KTLTAKVFEGHLESL LRDMYIR
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc09g0247541 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 215/229 (93.89%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 1    MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
            MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKII KYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 1066

Query: 61   LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVY AKDLILTGYT+SDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTNSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
            A CE AKEAVWL+KFLHDLEVVPNMNL ITLYCDNSG VANSKEPRSHKRGKHIERKYHL
Sbjct: 1127 AACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
            IREIVQRGDVIVTKI  EHNI DPF KTLTAKVFEGHLESL LRDMYIR
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc09g0247541 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 215/229 (93.89%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
            MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKI+ KYLRRTRDYM
Sbjct: 881  MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 940

Query: 61   LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVY AKDLILTGYTDSDFQTDKDSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 941  LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1000

Query: 121  ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
            A CE AKEAVWLRKFLHDLEVVPNMNL ITLYCDNSG VANSKEPRSHKRGKHIERKYHL
Sbjct: 1001 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1060

Query: 181  IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
            IREIVQRGDVIVTKI  EHNI DPF KTLTAKVFEGHLESL LRDMYIR
Sbjct: 1061 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1109

[Close]

BLAST of Cmc09g0247541 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 435.3 bits (1118), Expect = 3.3e-118
Identity = 215/229 (93.89%), Postives = 215/229 (93.89%), Query Frame = 0


Query: 1   MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
           MRRIPYASAVGSLMY MLCTRPDICYAVGIVSRYQSNPGLDHWT VKII KYLRRTRDYM
Sbjct: 72  MRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 131

Query: 61  LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
           LVY AKDLILTGYTDSDFQTDKDSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 132 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
           A CE AKEAVWLRKFLHDLEVVPNMNL ITLYCDNSG VANSKEPRSHKRGKHIERKYHL
Sbjct: 192 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 251

Query: 181 IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
           IREIVQRGDVIVTKI  EHNI DPF KTLTAKVFEGHLESL LRDMYIR
Sbjct: 252 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 300

[Close]

BLAST of Cmc09g0247541 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.3e-50
Identity = 101/215 (46.98%), Postives = 135/215 (62.79%), Query Frame = 0


Query: 1    MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
            M ++PY+SAVGSLMYAM+CTRPDI +AVG+VSR+  NPG +HW  VK I +YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            L +   D IL GYTD+D   D D+RKS++  +FT +GGA+ W+S  Q C+A ST EAEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
            A  ET KE +WL++FL +L +         +YCD+   +  SK    H R KHI+ +YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 181  IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFE 216
            IRE+V    + V KI+   N  D   K +    FE
Sbjct: 1286 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

[Close]

BLAST of Cmc09g0247541 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-33
Identity = 80/214 (37.38%), Postives = 120/214 (56.07%), Query Frame = 0


Query: 5    PYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYE 64
            P  S +G LMY MLCTRPD+  AV I+SRY S    + W  +K + +YL+ T D  L+++
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1239

Query: 65   ---AKDLILTGYTDSDFQTDKDSRKSTSRSVFTL-NGGAVVWRSIKQGCIADSTMEAEYV 124
               A +  + GY DSD+   +  RKST+  +F + +   + W + +Q  +A S+ EAEY+
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299

Query: 125  ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 184
            A  E  +EA+WL+  L  + +   +   I +Y DN G ++ +  P  HKR KHI+ KYH 
Sbjct: 1300 ALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHF 1359

Query: 185  IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVF 215
             RE VQ   + +  I  E+ + D F K L A  F
Sbjct: 1360 AREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391

[Close]

BLAST of Cmc09g0247541 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-28
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 1   MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
           M+ +PY SAVG++MY M+ TRPD+  AVG++S++ S+P   HW  +K + +YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVY-EAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEY 120
           L +  A    L GY+D+D+  D +SR+STS  +F LNGG V WRS KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VATCETAKEAVWL 133
           +A  E  +EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc09g0247541 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.1e-26
Identity = 71/211 (33.65%), Postives = 104/211 (49.29%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDY-MLVYE 65
            Y   VGSL Y +  TRPD+ YAV  +S+Y   P  DHW  +K + +YL  T D+ + + +
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   AKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCE 125
               L L  Y+D+D+  D D   ST+  +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  TAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREI 185
            T+ E  W+   L +L +   ++    +YCDN G       P  H R KHI   YH IR  
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQ 1407

Query: 186  VQRGDVIVTKITLEHNIVDPFRKTLTAKVFE 216
            VQ G + V  ++    + D   K L+   F+
Sbjct: 1408 VQSGALRVVHVSTHDQLADTLTKPLSRVAFQ 1435

[Close]

BLAST of Cmc09g0247541 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.5e-24
Identity = 70/211 (33.18%), Postives = 103/211 (48.82%), Query Frame = 0


Query: 6    YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDY-MLVYE 65
            Y   VGSL Y +  TRPDI YAV  +S++   P  +H   +K I +YL  T ++ + + +
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   AKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCE 125
               L L  Y+D+D+  DKD   ST+  +  L    + W S KQ  +  S+ EAEY +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  TAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREI 185
            T+ E  W+   L +L +   +     +YCDN G       P  H R KHI   YH IR  
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ 1424

Query: 186  VQRGDVIVTKITLEHNIVDPFRKTLTAKVFE 216
            VQ G + V  ++    + D   K L+   F+
Sbjct: 1425 VQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1452

[Close]

BLAST of Cmc09g0247541 vs. ExPASy TrEMBL
Match: A0A5D3DS50 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001740 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 2.9e-123
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 9   AVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYEAKDL 68
           AVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYEAKDL
Sbjct: 609 AVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYEAKDL 668

Query: 69  ILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCETAKE 128
           ILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCETAKE
Sbjct: 669 ILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCETAKE 728

Query: 129 AVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRG 188
           AVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRG
Sbjct: 729 AVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRG 788

Query: 189 DVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
           DVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR
Sbjct: 789 DVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 829

[Close]

BLAST of Cmc09g0247541 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.3e-119
Identity = 215/229 (93.89%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
            MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKI+ KYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 1066

Query: 61   LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVY AKDLILTGYTDSDFQTDKDSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
            A CE AKEAVWLRKFLHDLEVVPNMNL ITLYCDNSG VANSKEPRSHKRGKHIERKYHL
Sbjct: 1127 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
            IREIVQRGDVIVTKI  EHNI DPF KTLTAKVFEGHLESL LRDMYIR
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc09g0247541 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.3e-119
Identity = 215/229 (93.89%), Postives = 216/229 (94.32%), Query Frame = 0


Query: 1    MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
            MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKI+ KYLRRTRDYM
Sbjct: 881  MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYM 940

Query: 61   LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVY AKDLILTGYTDSDFQTDKDSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 941  LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1000

Query: 121  ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
            A CE AKEAVWLRKFLHDLEVVPNMNL ITLYCDNSG VANSKEPRSHKRGKHIERKYHL
Sbjct: 1001 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1060

Query: 181  IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
            IREIVQRGDVIVTKI  EHNI DPF KTLTAKVFEGHLESL LRDMYIR
Sbjct: 1061 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1109

[Close]

BLAST of Cmc09g0247541 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.3e-119
Identity = 215/229 (93.89%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 1    MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
            MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWT VKII KYLRRTRDYM
Sbjct: 1007 MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 1066

Query: 61   LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
            LVY AKDLILTGYT+SDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 1067 LVYGAKDLILTGYTNSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1126

Query: 121  ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
            A CE AKEAVWL+KFLHDLEVVPNMNL ITLYCDNSG VANSKEPRSHKRGKHIERKYHL
Sbjct: 1127 AACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 1186

Query: 181  IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
            IREIVQRGDVIVTKI  EHNI DPF KTLTAKVFEGHLESL LRDMYIR
Sbjct: 1187 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 1235

[Close]

BLAST of Cmc09g0247541 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.6e-118
Identity = 215/229 (93.89%), Postives = 215/229 (93.89%), Query Frame = 0


Query: 1   MRRIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYM 60
           MRRIPYASAVGSLMY MLCTRPDICYAVGIVSRYQSNPGLDHWT VKII KYLRRTRDYM
Sbjct: 72  MRRIPYASAVGSLMYVMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIILKYLRRTRDYM 131

Query: 61  LVYEAKDLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 120
           LVY AKDLILTGYTDSDFQTDKDSRKSTS SVFTLNGGAVVWRSIKQGCIADSTMEAEYV
Sbjct: 132 LVYGAKDLILTGYTDSDFQTDKDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 ATCETAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHL 180
           A CE AKEAVWLRKFLHDLEVVPNMNL ITLYCDNSG VANSKEPRSHKRGKHIERKYHL
Sbjct: 192 AACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHL 251

Query: 181 IREIVQRGDVIVTKITLEHNIVDPFRKTLTAKVFEGHLESLCLRDMYIR 230
           IREIVQRGDVIVTKI  EHNI DPF KTLTAKVFEGHLESL LRDMYIR
Sbjct: 252 IREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMYIR 300

[Close]

BLAST of Cmc09g0247541 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 98.6 bits (244), Expect = 6.9e-21
Identity = 59/179 (32.96%), Postives = 96/179 (53.63%), Query Frame = 0


Query: 6   YASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTTVKIIFKYLRRTRDYMLVYEA 65
           Y   +G LMY  + TR DI +AV  +S++   P L H   V  I  Y++ T    L Y +
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  K-DLILTGYTDSDFQTDKDSRKSTSRSVFTLNGGAVVWRSIKQGCIADSTMEAEYVATCE 125
           + ++ L  ++D+ FQ+ KD+R+ST+     L    + W+S KQ  ++ S+ EAEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 TAKEAVWLRKFLHDLEVVPNMNLSITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIRE 184
              E +WL +F  +L++   ++    L+CDN+  +  +     H+R KHIE   H +RE
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

The following BLAST results are available for this feature:

BLAST of Cmc09g0247541 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062410.1	5.9e-123	100.00	gag/pol protein [Cucumis melo var. makuwa] >TYK26571.1 gag/pol protein [Cucumis ...	[more]
KAA0025945.1	1.5e-118	93.89	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0035907.1	1.5e-118	93.89	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0059226.1	1.5e-118	93.89	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	3.3e-118	93.89	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0247541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.3e-50	46.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.6e-33	37.38	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	5.7e-28	47.37	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	9.1e-26	33.65	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	8.5e-24	33.18	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc09g0247541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DS50	2.9e-123	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G0017...	[more]
A0A5A7TZD0	7.3e-119	93.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	7.3e-119	93.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5A7T2V9	7.3e-119	93.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5A7TKM4	1.6e-118	93.89	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047...	[more]

BLAST of Cmc09g0247541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.9e-21	32.96	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 84..186
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 84..186
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 71..212 e-value: 4.4564E-61 score: 186.135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0247541.1	Cmc09g0247541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding