Cmc09g0247531 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0247531
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr09: 12264699 .. 12265301 (+)
RNA-Seq Expression	Cmc09g0247531
Synteny	Cmc09g0247531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAGTCTATAAGGATTCTCTTGTCCATCACCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTGAATAGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCCAAGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGCAAGCTGAATCAATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGAAAAGTGGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTTATTGGGAATGATGTGGGATACCTTACTGACGTTAAAGCTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTAGGAGAGACACAATATGTTCTTGGAATCCAAATCATAAGGGATCGGAAAAACAAAATGCTAGCACTGTCTCAAGCAACCTATATCGACAAAATGTTGGTTCGATATTCGATGCAGAACTCTAAGAAAGGTTTATTACCTTTCAGGCATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTTAA

mRNA sequence

ATGTTAAAGTCTATAAGGATTCTCTTGTCCATCACCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTGAATAGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCCAAGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGCAAGCTGAATCAATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGAAAAGTGGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTTATTGGGAATGATGTGGGATACCTTACTGACGTTAAAGCTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTAGGAGAGACACAATATGTTCTTGGAATCCAAATCATAAGGGATCGGAAAAACAAAATGCTAGCACTGTCTCAAGCAACCTATATCGACAAAATGTTGGTTCGATATTCGATGCAGAACTCTAAGAAAGGTTTATTACCTTTCAGGCATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTTAA

Coding sequence (CDS)

ATGTTAAAGTCTATAAGGATTCTCTTGTCCATCACCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTGAATAGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCCAAGGGTTCATAACCCAAGGTCAAGAGCAAAAAGTTTGCAAGCTGAATCAATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACTGCGATCAAATCCTACGGTTTTGACCAAAACGTTGATGAACCTTGTGTATATAAGAAAATCAACAAAGGAAAAGTGGCTTTCTTAGTACTTTATGTGGACGATATCCTCCTTATTGGGAATGATGTGGGATACCTTACTGACGTTAAAGCTTGGCTAGCAGCCCAATTCCAAATGAAAGATTTAGGAGAGACACAATATGTTCTTGGAATCCAAATCATAAGGGATCGGAAAAACAAAATGCTAGCACTGTCTCAAGCAACCTATATCGACAAAATGTTGGTTCGATATTCGATGCAGAACTCTAAGAAAGGTTTATTACCTTTCAGGCATGGGGTTCACTTGTCTAAGGAACAGTGTCCTAAGACACCTTAA

Protein sequence

MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKKGLLPFRHGVHLSKEQCPKTP

Homology

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BLAST of Cmc09g0247531 vs. NCBI nr
Match: KAA0059556.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK29968.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 388.7 bits (997), Expect = 3.1e-104
Identity = 191/200 (95.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
           MLKSIRILLSI TFYDYEIWQMDVKTAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 144 MLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRS 203

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIK YGFDQNVDEPCVYKKINKGKVAFLVLY+DDILLIGNDVG
Sbjct: 204 IYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYMDDILLIGNDVG 263

Query: 121 YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
           YLTDVKAWLAAQFQMKD+GE QYVLGIQIIRDRKNK LALSQATYIDKMLVRYSMQNSKK
Sbjct: 264 YLTDVKAWLAAQFQMKDVGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 323

Query: 181 GLLPFRHGVHLSKEQCPKTP 201
           GLLPFRHGVHLSKEQCPKTP
Sbjct: 324 GLLPFRHGVHLSKEQCPKTP 343

[Close]

BLAST of Cmc09g0247531 vs. NCBI nr
Match: KAA0040367.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK23337.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 388.3 bits (996), Expect = 4.1e-104
Identity = 191/200 (95.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
           MLKSIRILLSI TFYDYEIWQMDVKTAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
           IYGLKQ+SRSWN+RFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG
Sbjct: 61  IYGLKQSSRSWNMRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
           YLTDVKAWLA QFQMKDLGETQYVLGIQIIRDRKNK LALSQATYIDKMLVRYSMQNSKK
Sbjct: 121 YLTDVKAWLATQFQMKDLGETQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 180

Query: 181 GLLPFRHGVHLSKEQCPKTP 201
            LLPFRHGVHLSKEQCPKTP
Sbjct: 181 DLLPFRHGVHLSKEQCPKTP 200

[Close]

BLAST of Cmc09g0247531 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.9 bits (995), Expect = 5.4e-104
Identity = 192/200 (96.00%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1    MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
            MLKSIRILLSI TFYDYEIWQMDVKTAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 802  MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61   IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
            IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG
Sbjct: 862  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121  YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
            YLTDVKAWLAAQFQMKDLGE QYVLGIQIIRDRKNK LALSQATYIDK+LVRYSMQNSKK
Sbjct: 922  YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 981

Query: 181  GLLPFRHGVHLSKEQCPKTP 201
            GLLPFRHGVHLSKEQ PKTP
Sbjct: 982  GLLPFRHGVHLSKEQSPKTP 1001

[Close]

BLAST of Cmc09g0247531 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 387.9 bits (995), Expect = 5.4e-104
Identity = 192/200 (96.00%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
           MLKSIRILLSI TFYDYEIWQMDVKTAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 676 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 735

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG
Sbjct: 736 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 795

Query: 121 YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
           YLTDVKAWLAAQFQMKDLGE QYVLGIQIIRDRKNK LALSQATYIDK+LVRYSMQNSKK
Sbjct: 796 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 855

Query: 181 GLLPFRHGVHLSKEQCPKTP 201
           GLLPFRHGVHLSKEQ PKTP
Sbjct: 856 GLLPFRHGVHLSKEQSPKTP 875

[Close]

BLAST of Cmc09g0247531 vs. NCBI nr
Match: KAA0033121.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-103
Identity = 190/200 (95.00%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
           MLKSIRILLSI TFYDYEIW+MDV TAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 412 MLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKSYGF+QNVDEPCVYKKINKGKV FLVLYVDDILLIGNDVG
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKINKGKVVFLVLYVDDILLIGNDVG 531

Query: 121 YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
           YLTDVKAWLAAQFQMKDLGE QYVLGIQIIRDRKNK LALSQATYIDKMLVRYSMQNSKK
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 591

Query: 181 GLLPFRHGVHLSKEQCPKTP 201
           GLLPFRHGVHLSKEQCPKTP
Sbjct: 592 GLLPFRHGVHLSKEQCPKTP 611

[Close]

BLAST of Cmc09g0247531 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.4e-46
Identity = 90/199 (45.23%), Postives = 136/199 (68.34%), Query Frame = 0


Query: 2    LKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQSI 61
            + SIR +LS+    D E+ Q+DVKTAFL+ +LEE I+M QP+GF   G++  VCKLN+S+
Sbjct: 901  MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960

Query: 62   YGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY-KKINKGKVAFLVLYVDDILLIGNDVG 121
            YGLKQA R W ++FD+ +KS  + +   +PCVY K+ ++     L+LYVDD+L++G D G
Sbjct: 961  YGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKG 1020

Query: 122  YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 181
             +  +K  L+  F MKDLG  Q +LG++I+R+R ++ L LSQ  YI+++L R++M+N+K 
Sbjct: 1021 LIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKP 1080

Query: 182  GLLPFRHGVHLSKEQCPKT 200
               P    + LSK+ CP T
Sbjct: 1081 VSTPLAGHLKLSKKMCPTT 1099

[Close]

BLAST of Cmc09g0247531 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-28
Identity = 68/178 (38.20%), Postives = 111/178 (62.36%), Query Frame = 0


Query: 2    LKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQSI 61
            + S R +LS+   Y+ ++ QMDVKTAFLN  L+E I+M  PQG         VCKLN++I
Sbjct: 981  ISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAI 1040

Query: 62   YGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY--KKINKGKVAFLVLYVDDILLIGNDV 121
            YGLKQA+R W   F+ A+K   F  +  + C+Y   K N  +  +++LYVDD+++   D+
Sbjct: 1041 YGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDM 1100

Query: 122  GYLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQN 178
              + + K +L  +F+M DL E ++ +GI+I  + +   + LSQ+ Y+ K+L +++M+N
Sbjct: 1101 TRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMEN 1154

[Close]

BLAST of Cmc09g0247531 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.9e-25
Identity = 68/189 (35.98%), Postives = 102/189 (53.97%), Query Frame = 0


Query: 4    SIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQSIYG 63
            SIRI+L +     + I Q+DV  AFL   L + ++MSQP GFI + +   VCKL +++YG
Sbjct: 1046 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYG 1105

Query: 64   LKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVGYLT 123
            LKQA R+W +     + + GF  +V +  ++       + ++++YVDDIL+ GND   L 
Sbjct: 1106 LKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLH 1165

Query: 124  DVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKKGLL 183
            +    L+ +F +KD  E  Y LGI+    R    L LSQ  YI  +L R +M  +K    
Sbjct: 1166 NTLDNLSQRFSVKDHEELHYFLGIE--AKRVPTGLHLSQRRYILDLLARTNMITAKPVTT 1225

Query: 184  PFRHGVHLS 193
            P      LS
Sbjct: 1226 PMAPSPKLS 1232

[Close]

BLAST of Cmc09g0247531 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 65/197 (32.99%), Postives = 104/197 (52.79%), Query Frame = 0


Query: 4    SIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQSIYG 63
            SIRI+L +     + I Q+DV  AFL   L + ++MSQP GF+ + +   VC+L ++IYG
Sbjct: 1029 SIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYG 1088

Query: 64   LKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVGYLT 123
            LKQA R+W +   T + + GF  ++ +  ++       + ++++YVDDIL+ GND   L 
Sbjct: 1089 LKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLK 1148

Query: 124  DVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKKGLL 183
                 L+ +F +K+  +  Y LGI+    R  + L LSQ  Y   +L R +M  +K    
Sbjct: 1149 HTLDALSQRFSVKEHEDLHYFLGIE--AKRVPQGLHLSQRRYTLDLLARTNMLTAKPVAT 1208

Query: 184  PFRHGVHLSKEQCPKTP 201
            P      L+     K P
Sbjct: 1209 PMATSPKLTLHSGTKLP 1223

[Close]

BLAST of Cmc09g0247531 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 22  MDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQSIYGLKQASRSWNIRFDTAIKS 81
           MDV TAFLNS ++E I++ QP GF+ +     V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  YGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGET 141
            GF ++  E  +Y +       ++ +YVDD+L+          VK  L   + MKDLG+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 142 QYVLGIQIIRDRKNKMLALSQATYIDK 169
              LG+  I    N  + LS   YI K
Sbjct: 121 DKFLGLN-IHQSSNGDITLSLQDYIAK 146

[Close]

BLAST of Cmc09g0247531 vs. ExPASy TrEMBL
Match: A0A5A7UZF3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1449G00020 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 191/200 (95.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
           MLKSIRILLSI TFYDYEIWQMDVKTAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 144 MLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRS 203

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIK YGFDQNVDEPCVYKKINKGKVAFLVLY+DDILLIGNDVG
Sbjct: 204 IYGLKQASRSWNIRFDTAIKCYGFDQNVDEPCVYKKINKGKVAFLVLYMDDILLIGNDVG 263

Query: 121 YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
           YLTDVKAWLAAQFQMKD+GE QYVLGIQIIRDRKNK LALSQATYIDKMLVRYSMQNSKK
Sbjct: 264 YLTDVKAWLAAQFQMKDVGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 323

Query: 181 GLLPFRHGVHLSKEQCPKTP 201
           GLLPFRHGVHLSKEQCPKTP
Sbjct: 324 GLLPFRHGVHLSKEQCPKTP 343

[Close]

BLAST of Cmc09g0247531 vs. ExPASy TrEMBL
Match: A0A5D3DI92 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003980 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.0e-104
Identity = 191/200 (95.50%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
           MLKSIRILLSI TFYDYEIWQMDVKTAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNDNLEESIFMSQPEGFITQGQEQKVCKLNRS 60

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
           IYGLKQ+SRSWN+RFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG
Sbjct: 61  IYGLKQSSRSWNMRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
           YLTDVKAWLA QFQMKDLGETQYVLGIQIIRDRKNK LALSQATYIDKMLVRYSMQNSKK
Sbjct: 121 YLTDVKAWLATQFQMKDLGETQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 180

Query: 181 GLLPFRHGVHLSKEQCPKTP 201
            LLPFRHGVHLSKEQCPKTP
Sbjct: 181 DLLPFRHGVHLSKEQCPKTP 200

[Close]

BLAST of Cmc09g0247531 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.6e-104
Identity = 192/200 (96.00%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1    MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
            MLKSIRILLSI TFYDYEIWQMDVKTAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 802  MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 861

Query: 61   IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
            IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG
Sbjct: 862  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 921

Query: 121  YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
            YLTDVKAWLAAQFQMKDLGE QYVLGIQIIRDRKNK LALSQATYIDK+LVRYSMQNSKK
Sbjct: 922  YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 981

Query: 181  GLLPFRHGVHLSKEQCPKTP 201
            GLLPFRHGVHLSKEQ PKTP
Sbjct: 982  GLLPFRHGVHLSKEQSPKTP 1001

[Close]

BLAST of Cmc09g0247531 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.6e-104
Identity = 192/200 (96.00%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
           MLKSIRILLSI TFYDYEIWQMDVKTAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 676 MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 735

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG
Sbjct: 736 IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 795

Query: 121 YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
           YLTDVKAWLAAQFQMKDLGE QYVLGIQIIRDRKNK LALSQATYIDK+LVRYSMQNSKK
Sbjct: 796 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKLLVRYSMQNSKK 855

Query: 181 GLLPFRHGVHLSKEQCPKTP 201
           GLLPFRHGVHLSKEQ PKTP
Sbjct: 856 GLLPFRHGVHLSKEQSPKTP 875

[Close]

BLAST of Cmc09g0247531 vs. ExPASy TrEMBL
Match: A0A5D3CZY3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00460 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.5e-104
Identity = 190/200 (95.00%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MLKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFITQGQEQKVCKLNQS 60
           MLKSIRILLSI TFYDYEIW+MDV TAFLN NLEESIFMSQP+GFITQGQEQKVCKLN+S
Sbjct: 412 MLKSIRILLSIATFYDYEIWKMDVNTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRS 471

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGNDVG 120
           IYGLKQASRSWNIRFDTAIKSYGF+QNVDEPCVYKKINKGKV FLVLYVDDILLIGNDVG
Sbjct: 472 IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKINKGKVVFLVLYVDDILLIGNDVG 531

Query: 121 YLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQNSKK 180
           YLTDVKAWLAAQFQMKDLGE QYVLGIQIIRDRKNK LALSQATYIDKMLVRYSMQNSKK
Sbjct: 532 YLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRKNKTLALSQATYIDKMLVRYSMQNSKK 591

Query: 181 GLLPFRHGVHLSKEQCPKTP 201
           GLLPFRHGVHLSKEQCPKTP
Sbjct: 592 GLLPFRHGVHLSKEQCPKTP 611

[Close]

BLAST of Cmc09g0247531 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 114.8 bits (286), Expect = 8.1e-26
Identity = 63/195 (32.31%), Postives = 108/195 (55.38%), Query Frame = 0


Query: 2   LKSIRILLSITTFYDYEIWQMDVKTAFLNSNLEESIFMSQPQGFIT-QGQE---QKVCKL 61
           L S++++L+I+  Y++ + Q+D+  AFLN +L+E I+M  P G+   QG       VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  NQSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGN 121
            +SIYGLKQASR W ++F   +  +GF Q+  +   + KI       +++YVDDI++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DVGYLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQATYIDKMLVRYSMQN 181
           +   + ++K+ L + F+++DLG  +Y LG++I R      + + Q  Y   +L    +  
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAG--INICQRKYALDLLDETGLLG 352

Query: 182 SKKGLLPFRHGVHLS 193
            K   +P    V  S
Sbjct: 353 CKPSSVPMDPSVTFS 365

[Close]

BLAST of Cmc09g0247531 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.2e-06
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 104 FLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGETQYVLGIQIIRDRKNKMLALSQA 163
           +L+LYVDDILL G+    L  +   L++ F MKDLG   Y LGIQI        L LSQ 
Sbjct: 2   YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQT 61

Query: 164 TYIDKMLVRYSMQNSK 180
            Y +++L    M + K
Sbjct: 62  KYAEQILNNAGMLDCK 75

The following BLAST results are available for this feature:

BLAST of Cmc09g0247531 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059556.1	3.1e-104	95.50	gag/pol protein [Cucumis melo var. makuwa] >TYK29968.1 gag/pol protein [Cucumis ...	[more]
KAA0040367.1	4.1e-104	95.50	gag/pol protein [Cucumis melo var. makuwa] >TYK23337.1 gag/pol protein [Cucumis ...	[more]
KAA0025945.1	5.4e-104	96.00	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	5.4e-104	96.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0033121.1	1.6e-103	95.00	gag/pol protein [Cucumis melo var. makuwa] >TYK17112.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc09g0247531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-46	45.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.2e-28	38.20	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	3.9e-25	35.98	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.5e-24	32.99	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	1.8e-17	35.37	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc09g0247531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZF3	1.5e-104	95.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1449G000...	[more]
A0A5D3DI92	2.0e-104	95.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G0039...	[more]
A0A5A7TZD0	2.6e-104	96.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7UYE8	2.6e-104	96.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]
A0A5D3CZY3	7.5e-104	95.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G004...	[more]

BLAST of Cmc09g0247531 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.1e-26	32.31	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	3.2e-06	42.11	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..184 e-value: 5.8E-48 score: 163.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 4..179
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0247531.1	Cmc09g0247531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding