Cmc09g0247161 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0247161
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr09: 11550935 .. 11551495 (-)
RNA-Seq Expression	Cmc09g0247161
Synteny	Cmc09g0247161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCGACCCTGTGTTCTGGAGTTCTCAGGGAGTTGGGACTCTCACTTGCACTTGATGGAATTCGCTTATAATAACAGCTACCAGGCTACCATCGGCATGTCACCATTTGAGGCTCTGTATGGTAAGTGTTGTAGATCTCCTGTTTGTTGGGGTGAGGTTGGTGAGCAGAGAATGCTAGGCCTCGAGTTAGTTCGGACCACCAACGCAGCCATCCAGAAGATTAGAGCTTGTATGTTGACAGCACAGAGCAGACAGAAGAGTTATGCTGACGTACGGCGTAAGGATCTCGAGTTCGATGTGGGAGACATGGTCTTTCTGAAGGTAGCACCTGTGAAGGGTGTTCTAAGGTTCGAGAAGAAGGAAAAGCTAAGTCCGCACTTTGTAGGGCCATTTGAGATACTGGAGCGAATTGGCCTTGTAACTTATCTTTTGGCGCTGCCCCCATCTCTTTTTGCAGTGCATGACGTATTCCATGTCTCCATGCTGAGGAAGTATGTCACAGATCCGACGCATGTGGTGGACTTCGAGCCATTGCAAATTGCTGAAGACTTGAGTTAA

mRNA sequence

ATGCTGCGACCCTGTGTTCTGGAGTTCTCAGGGAGTTGGGACTCTCACTTGCACTTGATGGAATTCGCTTATAATAACAGCTACCAGGCTACCATCGGCATGTCACCATTTGAGGCTCTGTATGGTAAGTGTTGTAGATCTCCTGTTTGTTGGGGTGAGGTTGGTGAGCAGAGAATGCTAGGCCTCGAGTTAGTTCGGACCACCAACGCAGCCATCCAGAAGATTAGAGCTTGTATGTTGACAGCACAGAGCAGACAGAAGAGTTATGCTGACGTACGGCGTAAGGATCTCGAGTTCGATGTGGGAGACATGGTCTTTCTGAAGGTAGCACCTGTGAAGGGTGTTCTAAGGTTCGAGAAGAAGGAAAAGCTAAGTCCGCACTTTGTAGGGCCATTTGAGATACTGGAGCGAATTGGCCTTGTAACTTATCTTTTGGCGCTGCCCCCATCTCTTTTTGCAGTGCATGACGTATTCCATGTCTCCATGCTGAGGAAGTATGTCACAGATCCGACGCATGTGGTGGACTTCGAGCCATTGCAAATTGCTGAAGACTTGAGTTAA

Coding sequence (CDS)

ATGCTGCGACCCTGTGTTCTGGAGTTCTCAGGGAGTTGGGACTCTCACTTGCACTTGATGGAATTCGCTTATAATAACAGCTACCAGGCTACCATCGGCATGTCACCATTTGAGGCTCTGTATGGTAAGTGTTGTAGATCTCCTGTTTGTTGGGGTGAGGTTGGTGAGCAGAGAATGCTAGGCCTCGAGTTAGTTCGGACCACCAACGCAGCCATCCAGAAGATTAGAGCTTGTATGTTGACAGCACAGAGCAGACAGAAGAGTTATGCTGACGTACGGCGTAAGGATCTCGAGTTCGATGTGGGAGACATGGTCTTTCTGAAGGTAGCACCTGTGAAGGGTGTTCTAAGGTTCGAGAAGAAGGAAAAGCTAAGTCCGCACTTTGTAGGGCCATTTGAGATACTGGAGCGAATTGGCCTTGTAACTTATCTTTTGGCGCTGCCCCCATCTCTTTTTGCAGTGCATGACGTATTCCATGTCTCCATGCTGAGGAAGTATGTCACAGATCCGACGCATGTGGTGGACTTCGAGCCATTGCAAATTGCTGAAGACTTGAGTTAA

Protein sequence

MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRMLGLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEKKEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQIAEDLS

Homology

[Close]

BLAST of Cmc09g0247161 vs. NCBI nr
Match: TYK26503.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 364.0 bits (933), Expect = 7.7e-97
Identity = 180/186 (96.77%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
           MLR CVLEFSGSWDSHLHLMEFAYNNSYQATI MSPFEALYGKCCRS VCWGEVGEQRML
Sbjct: 1   MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIDMSPFEALYGKCCRSLVCWGEVGEQRML 60

Query: 61  GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
           GLELV+TTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK
Sbjct: 61  GLELVQTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120

Query: 121 KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
           KEKLSP FVGPFEILERIGLVTYLLALPPSL AVHDVFHVSMLRKYVTDPTHVVDFEPLQ
Sbjct: 121 KEKLSPRFVGPFEILERIGLVTYLLALPPSLSAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180

Query: 181 IAEDLS 187
           IAEDLS
Sbjct: 181 IAEDLS 186

[Close]

BLAST of Cmc09g0247161 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 168/186 (90.32%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
            MLR CVLEFSGSWDSHLHLMEFAYNNSYQATIGM+PFEALYGKCCRSPVCWGEVGEQRML
Sbjct: 1253 MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 1312

Query: 61   GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
            GLELV+TTNAAIQKIRA MLTAQSRQKSYADVRRKDLEF+VGDMVFLKVAP+KGVLRF K
Sbjct: 1313 GLELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFVK 1372

Query: 121  KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
            K KLSP FVGPFEILERIG V Y LALPPS  AVHDVFH+SMLRKYV DPTHVVDFEPLQ
Sbjct: 1373 KGKLSPRFVGPFEILERIGPVAYRLALPPSFVAVHDVFHISMLRKYVADPTHVVDFEPLQ 1432

Query: 181  IAEDLS 187
            I+E+LS
Sbjct: 1433 ISENLS 1438

[Close]

BLAST of Cmc09g0247161 vs. NCBI nr
Match: KAA0025917.1 (pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo var. makuwa] >KAA0048622.1 pol protein [Cucumis melo var. makuwa] >KAA0056306.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 167/186 (89.78%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
            MLR CVLEFSGSWDSHLHLMEFAYNNSYQATIGM+PFEALYGKCCRSPVCWGEVGEQRML
Sbjct: 1298 MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 1357

Query: 61   GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
            G ELV+TTNAAIQKIRA MLTAQSRQKSYADVRRKDLEF+VGDMVFLKVAP+KGVLRFEK
Sbjct: 1358 GPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEK 1417

Query: 121  KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
            K KLSP FVGPFEILERIG V Y LALPPSL AVHDVFHVSMLR+YV DPTH+VDFEPLQ
Sbjct: 1418 KGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRRYVADPTHIVDFEPLQ 1477

Query: 181  IAEDLS 187
            ++E+LS
Sbjct: 1478 VSENLS 1483

[Close]

BLAST of Cmc09g0247161 vs. NCBI nr
Match: KAA0063370.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.4e-90
Identity = 167/186 (89.78%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
            MLR CVLEFSGSWDSHLHLMEFAYNNSYQATIGM+PFEALYGKCCRSPVCWGEVGEQRML
Sbjct: 1077 MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 1136

Query: 61   GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
            G ELV+TTNAAIQKIRACMLTAQSRQKSYADVRRKDLEF+VGDMVFLKVAP+KGVLRF K
Sbjct: 1137 GPELVQTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFVK 1196

Query: 121  KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
            K KLSP FVGPFEILERIG V Y LALPPS   VHDVFHVSMLR+YV DPTHVVDFEPLQ
Sbjct: 1197 KGKLSPRFVGPFEILERIGPVAYRLALPPSFSTVHDVFHVSMLRRYVADPTHVVDFEPLQ 1256

Query: 181  IAEDLS 187
            I+E+LS
Sbjct: 1257 ISENLS 1262

[Close]

BLAST of Cmc09g0247161 vs. NCBI nr
Match: KAA0063116.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 341.7 bits (875), Expect = 4.1e-90
Identity = 168/186 (90.32%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 1   MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
           MLR CVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML
Sbjct: 62  MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 121

Query: 61  GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
           G ELV+TTNAAIQKIRA MLTAQSRQKSYADVRRKDLEF+VGDMVFLKVAP+KGVLRF K
Sbjct: 122 GPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAK 181

Query: 121 KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
           K KLSP FVGPFEILERIG V Y LALPPS  AVHDVFH+SMLRKYV DPTHVVDFEPLQ
Sbjct: 182 KGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ 241

Query: 181 IAEDLS 187
           I+E+LS
Sbjct: 242 ISENLS 247

[Close]

BLAST of Cmc09g0247161 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYG-KCCRSPVCWGEVGEQRM 60
            +LR        +W  H+ L++ +YNN+  +   M+PFE ++      SP+      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTD 1154

Query: 61   LGLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDL-EFDVGDMVFLKVAPVKGVLRF 120
               E  + T    Q ++  + T   + K Y D++ +++ EF  GD+V +K     G L  
Sbjct: 1155 ---ENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKT-GFL-- 1214

Query: 121  EKKEKLSPHFVGPFEILERIGLVTYLLALPPSL-FAVHDVFHVSMLRKY 167
             K  KL+P F GPF +L++ G   Y L LP S+       FHVS L KY
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc09g0247161 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYG-KCCRSPVCWGEVGEQRM 60
            +LR        +W  H+ L++ +YNN+  +   M+PFE ++      SP+      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTD 1154

Query: 61   LGLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDL-EFDVGDMVFLKVAPVKGVLRF 120
               E  + T    Q ++  + T   + K Y D++ +++ EF  GD+V +K     G L  
Sbjct: 1155 ---ENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKT-GFL-- 1214

Query: 121  EKKEKLSPHFVGPFEILERIGLVTYLLALPPSL-FAVHDVFHVSMLRKY 167
             K  KL+P F GPF +L++ G   Y L LP S+       FHVS L KY
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc09g0247161 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYG-KCCRSPVCWGEVGEQRM 60
            +LR        +W  H+ L++ +YNN+  +   M+PFE ++      SP+      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTD 1154

Query: 61   LGLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDL-EFDVGDMVFLKVAPVKGVLRF 120
               E  + T    Q ++  + T   + K Y D++ +++ EF  GD+V +K     G L  
Sbjct: 1155 ---ENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKT-GFL-- 1214

Query: 121  EKKEKLSPHFVGPFEILERIGLVTYLLALPPSL-FAVHDVFHVSMLRKY 167
             K  KL+P F GPF +L++ G   Y L LP S+       FHVS L KY
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc09g0247161 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYG-KCCRSPVCWGEVGEQRM 60
            +LR        +W  H+ L++ +YNN+  +   M+PFE ++      SP+      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTD 1154

Query: 61   LGLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDL-EFDVGDMVFLKVAPVKGVLRF 120
               E  + T    Q ++  + T   + K Y D++ +++ EF  GD+V +K     G L  
Sbjct: 1155 ---ENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKT-GFL-- 1214

Query: 121  EKKEKLSPHFVGPFEILERIGLVTYLLALPPSL-FAVHDVFHVSMLRKY 167
             K  KL+P F GPF +L++ G   Y L LP S+       FHVS L KY
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc09g0247161 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 51/169 (30.18%), Postives = 82/169 (48.52%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYG-KCCRSPVCWGEVGEQRM 60
            +LR        +W  H+ L++ +YNN+  +   M+PFE ++      SP+      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKTD 1154

Query: 61   LGLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDL-EFDVGDMVFLKVAPVKGVLRF 120
               E  + T    Q ++  + T   + K Y D++ +++ EF  GD+V +K     G L  
Sbjct: 1155 ---ENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKT-GFL-- 1214

Query: 121  EKKEKLSPHFVGPFEILERIGLVTYLLALPPSL-FAVHDVFHVSMLRKY 167
             K  KL+P F GPF +L++ G   Y L LP S+       FHVS L KY
Sbjct: 1215 HKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]

BLAST of Cmc09g0247161 vs. ExPASy TrEMBL
Match: A0A5D3DSD8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00760 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 3.7e-97
Identity = 180/186 (96.77%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
           MLR CVLEFSGSWDSHLHLMEFAYNNSYQATI MSPFEALYGKCCRS VCWGEVGEQRML
Sbjct: 1   MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIDMSPFEALYGKCCRSLVCWGEVGEQRML 60

Query: 61  GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
           GLELV+TTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK
Sbjct: 61  GLELVQTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120

Query: 121 KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
           KEKLSP FVGPFEILERIGLVTYLLALPPSL AVHDVFHVSMLRKYVTDPTHVVDFEPLQ
Sbjct: 121 KEKLSPRFVGPFEILERIGLVTYLLALPPSLSAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180

Query: 181 IAEDLS 187
           IAEDLS
Sbjct: 181 IAEDLS 186

[Close]

BLAST of Cmc09g0247161 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91
Identity = 168/186 (90.32%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
            MLR CVLEFSGSWDSHLHLMEFAYNNSYQATIGM+PFEALYGKCCRSPVCWGEVGEQRML
Sbjct: 1253 MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 1312

Query: 61   GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
            GLELV+TTNAAIQKIRA MLTAQSRQKSYADVRRKDLEF+VGDMVFLKVAP+KGVLRF K
Sbjct: 1313 GLELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFVK 1372

Query: 121  KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
            K KLSP FVGPFEILERIG V Y LALPPS  AVHDVFH+SMLRKYV DPTHVVDFEPLQ
Sbjct: 1373 KGKLSPRFVGPFEILERIGPVAYRLALPPSFVAVHDVFHISMLRKYVADPTHVVDFEPLQ 1432

Query: 181  IAEDLS 187
            I+E+LS
Sbjct: 1433 ISENLS 1438

[Close]

BLAST of Cmc09g0247161 vs. ExPASy TrEMBL
Match: A0A5A7TP01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00070 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.9e-91
Identity = 167/186 (89.78%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
            MLR CVLEFSGSWDSHLHLMEFAYNNSYQATIGM+PFEALYGKCCRSPVCWGEVGEQRML
Sbjct: 1298 MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 1357

Query: 61   GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
            G ELV+TTNAAIQKIRA MLTAQSRQKSYADVRRKDLEF+VGDMVFLKVAP+KGVLRFEK
Sbjct: 1358 GPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFEK 1417

Query: 121  KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
            K KLSP FVGPFEILERIG V Y LALPPSL AVHDVFHVSMLR+YV DPTH+VDFEPLQ
Sbjct: 1418 KGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRRYVADPTHIVDFEPLQ 1477

Query: 181  IAEDLS 187
            ++E+LS
Sbjct: 1478 VSENLS 1483

[Close]

BLAST of Cmc09g0247161 vs. ExPASy TrEMBL
Match: A0A5A7V809 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4594G00010 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 167/186 (89.78%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 1    MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
            MLR CVLEFSGSWDSHLHLMEFAYNNSYQATIGM+PFEALYGKCCRSPVCWGEVGEQRML
Sbjct: 1077 MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGEQRML 1136

Query: 61   GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
            G ELV+TTNAAIQKIRACMLTAQSRQKSYADVRRKDLEF+VGDMVFLKVAP+KGVLRF K
Sbjct: 1137 GPELVQTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFVK 1196

Query: 121  KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
            K KLSP FVGPFEILERIG V Y LALPPS   VHDVFHVSMLR+YV DPTHVVDFEPLQ
Sbjct: 1197 KGKLSPRFVGPFEILERIGPVAYRLALPPSFSTVHDVFHVSMLRRYVADPTHVVDFEPLQ 1256

Query: 181  IAEDLS 187
            I+E+LS
Sbjct: 1257 ISENLS 1262

[Close]

BLAST of Cmc09g0247161 vs. ExPASy TrEMBL
Match: A0A5A7V9J8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17551G00010 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.0e-90
Identity = 168/186 (90.32%), Postives = 174/186 (93.55%), Query Frame = 0


Query: 1   MLRPCVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 60
           MLR CVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML
Sbjct: 62  MLRACVLEFSGSWDSHLHLMEFAYNNSYQATIGMSPFEALYGKCCRSPVCWGEVGEQRML 121

Query: 61  GLELVRTTNAAIQKIRACMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPVKGVLRFEK 120
           G ELV+TTNAAIQKIRA MLTAQSRQKSYADVRRKDLEF+VGDMVFLKVAP+KGVLRF K
Sbjct: 122 GPELVQTTNAAIQKIRARMLTAQSRQKSYADVRRKDLEFEVGDMVFLKVAPMKGVLRFAK 181

Query: 121 KEKLSPHFVGPFEILERIGLVTYLLALPPSLFAVHDVFHVSMLRKYVTDPTHVVDFEPLQ 180
           K KLSP FVGPFEILERIG V Y LALPPS  AVHDVFH+SMLRKYV DPTHVVDFEPLQ
Sbjct: 182 KGKLSPRFVGPFEILERIGPVAYRLALPPSFAAVHDVFHISMLRKYVADPTHVVDFEPLQ 241

Query: 181 IAEDLS 187
           I+E+LS
Sbjct: 242 ISENLS 247

The following BLAST results are available for this feature:

BLAST of Cmc09g0247161 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26503.1	7.7e-97	96.77	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	1.4e-90	90.32	pol protein [Cucumis melo var. makuwa]	[more]
KAA0025917.1	1.8e-90	89.78	pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo v...	[more]
KAA0063370.1	2.4e-90	89.78	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063116.1	4.1e-90	90.32	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0247161 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.5e-10	30.18	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.5e-10	30.18	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.5e-10	30.18	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.5e-10	30.18	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.5e-10	30.18	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc09g0247161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSD8	3.7e-97	96.77	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00760 PE...	[more]
A0A5A7V4E4	6.8e-91	90.32	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7TP01	8.9e-91	89.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14...	[more]
A0A5A7V809	1.2e-90	89.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45...	[more]
A0A5A7V9J8	2.0e-90	90.32	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17551G00010 ...	[more]

BLAST of Cmc09g0247161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..83 e-value: 2.0E-9 score: 39.0
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 1..181
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0247161.1	Cmc09g0247161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding