Cmc09g0247081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0247081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr09: 11491118 .. 11492020 (-)
RNA-Seq Expression	Cmc09g0247081
Synteny	Cmc09g0247081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTGGATTGACAAATGCTCCAACAGTGTTTATGAATTTGATGAACAAAGTGTTTAAGGATTTCTTAGACACTTTTGTAATTGTGTTTATTGATGATATCTTAAAATATTCCAAGACAGAGGTAGAGCATGAGGAGCACTTACGTATGATTCTAGAGACCCTTCGAGCCAATAAATTATATGCAAATTTTTCAAAATGTGAGTTTTGGTTGTAGCAGGTATTTTTTCTAGACCATGTGGTTTCTAAAGATGGTGTTTTGGTGGATCCAGCTAAGATAGAGGCTATTACCAGTTGGCCCCGACCTTCCACAGTTAGTGAAGTTCGTAGCTTTTTAGGTTTAGCAGGTTATTACCATCGGTTTATGGAGGACTTTTCCCGTATAGCAACTCCTTTTACTCAGTTGACCAGGAAGGGAGCTCCATTTGTTTGGAGCAAGGCATGTAAGGATAGTTTTCAGAACCTTAAACAGAAGCTCGTTACTGCATCGATTCTTACTATACCTGATTGTTCAGGGAGTTTTGTGATTTATAGTGATGCTTCTAAGAAAGGTTTGAGTTATGTTCTAATGCAGCAAGGTAAAGTCGTCACTTATGCTTCTCGTCAGTTGAAGAGTCATGAGGAGAATTACCTTACCCATGATTTAGAGTTGGCAGCAGTAGTTTTTGTACTGAAGATATGGAGACATTATTTGTATGGCGAGAAGATACAAATTTTTATGGACCATAAAAGCTTGAAATACTTCTTCACTCAAAAGGAGTTGAATATGAGGCAGCGAAGATGGCTTGAATTAGTAAAGGATTATGATTGTGAGATATTGTATCATCCAAGTAAGGCAAATATAGTAGTTGATGCCCTTAGTAGGAAGGTATCACACTCAGCAGCACTCATCACCAAATAG

mRNA sequence

ATGTCCTTTGGATTGACAAATGCTCCAACAGTGTTTATGAATTTGATGAACAAAGTGTTTAAGGATTTCTTAGACACTTTTGTAATTGTGTTTATTGATGATATCTTAAAATATTCCAAGACAGAGGTAGAGCATGAGGAGCACTTACGTATGATTCTAGAGACCCTTCGAGCCAATAAATTATATGCAAATTTTTCAAAATCTAAGATAGAGGCTATTACCAGTTGGCCCCGACCTTCCACAGTTAGTGAAGTTCGTAGCTTTTTAGGTTTAGCAGGTTATTACCATCGGTTTATGGAGGACTTTTCCCGTATAGCAACTCCTTTTACTCAGTTGACCAGGAAGGGAGCTCCATTTGTTTGGAGCAAGGCATGTAAGGATAGTTTTCAGAACCTTAAACAGAAGCTCGTTACTGCATCGATTCTTACTATACCTGATTGTTCAGGGAGTTTTGTGATTTATAGTGATGCTTCTAAGAAAGGTTTGAGTTATGTTCTAATGCAGCAAGGTAAAGTCGTCACTTATGCTTCTCGTCAGTTGAAGAGTCATGAGGAGAATTACCTTACCCATGATTTAGAGTTGGCAGCAGTAGTTTTTGTACTGAAGATATGGAGACATTATTTGTATGGCGAGAAGATACAAATTTTTATGGACCATAAAAGCTTGAAATACTTCTTCACTCAAAAGGAGTTGAATATGAGGCAGCGAAGATGGCTTGAATTAGTAAAGGATTATGATTGTGAGATATTGTATCATCCAAGTAAGGCAAATATAGTAGTTGATGCCCTTAGTAGGAAGGTATCACACTCAGCAGCACTCATCACCAAATAG

Coding sequence (CDS)

ATGTCCTTTGGATTGACAAATGCTCCAACAGTGTTTATGAATTTGATGAACAAAGTGTTTAAGGATTTCTTAGACACTTTTGTAATTGTGTTTATTGATGATATCTTAAAATATTCCAAGACAGAGGTAGAGCATGAGGAGCACTTACGTATGATTCTAGAGACCCTTCGAGCCAATAAATTATATGCAAATTTTTCAAAATCTAAGATAGAGGCTATTACCAGTTGGCCCCGACCTTCCACAGTTAGTGAAGTTCGTAGCTTTTTAGGTTTAGCAGGTTATTACCATCGGTTTATGGAGGACTTTTCCCGTATAGCAACTCCTTTTACTCAGTTGACCAGGAAGGGAGCTCCATTTGTTTGGAGCAAGGCATGTAAGGATAGTTTTCAGAACCTTAAACAGAAGCTCGTTACTGCATCGATTCTTACTATACCTGATTGTTCAGGGAGTTTTGTGATTTATAGTGATGCTTCTAAGAAAGGTTTGAGTTATGTTCTAATGCAGCAAGGTAAAGTCGTCACTTATGCTTCTCGTCAGTTGAAGAGTCATGAGGAGAATTACCTTACCCATGATTTAGAGTTGGCAGCAGTAGTTTTTGTACTGAAGATATGGAGACATTATTTGTATGGCGAGAAGATACAAATTTTTATGGACCATAAAAGCTTGAAATACTTCTTCACTCAAAAGGAGTTGAATATGAGGCAGCGAAGATGGCTTGAATTAGTAAAGGATTATGATTGTGAGATATTGTATCATCCAAGTAAGGCAAATATAGTAGTTGATGCCCTTAGTAGGAAGGTATCACACTCAGCAGCACTCATCACCAAATAG

Protein sequence

MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANKLYANFSKSKIEAITSWPRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK

Homology

[Close]

BLAST of Cmc09g0247081 vs. NCBI nr
Match: KAA0059062.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 485.0 bits (1247), Expect = 4.4e-133
Identity = 240/276 (86.96%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1    MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
            MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHE+HLRM+L+TLR NK
Sbjct: 739  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEKHLRMVLQTLRDNK 798

Query: 61   LYANFSKSKIEAITSWPRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFV 120
            LYA FSKSKIEA+T W  PSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFV
Sbjct: 799  LYAKFSKSKIEAVTGWTGPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 858

Query: 121  WSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQL 180
            WSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YASRQL
Sbjct: 859  WSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQL 918

Query: 181  KSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRRWLE 240
            KSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQRRWLE
Sbjct: 919  KSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLE 978

Query: 241  LVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
            LVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 979  LVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 1014

[Close]

BLAST of Cmc09g0247081 vs. NCBI nr
Match: KAA0046094.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 476.5 bits (1225), Expect = 1.6e-130
Identity = 242/300 (80.67%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1    MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
            MSFGLTNAP VFMNLMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NK
Sbjct: 2399 MSFGLTNAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 2458

Query: 61   LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
            LYA FSK                        +KIEA+T W RPSTVSEVRSFLGLAGYY 
Sbjct: 2459 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 2518

Query: 121  RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
            RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSD
Sbjct: 2519 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 2578

Query: 181  ASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIF 240
            ASKKGL  VLMQQGKVV YASRQLKSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 2579 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 2638

Query: 241  MDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
             DHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 2639 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 2698

[Close]

BLAST of Cmc09g0247081 vs. NCBI nr
Match: KAA0048687.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 474.6 bits (1220), Expect = 6.0e-130
Identity = 241/300 (80.33%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
           MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           LYA FSK                        +KIEA+T W RPSTVSEVRSFLGLAGYY 
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 813

Query: 121 RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
           RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSD
Sbjct: 814 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 873

Query: 181 ASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIF 240
           ASKKGL  VLMQQGKVV YASRQLKSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 874 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 933

Query: 241 MDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
            DHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 934 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 993

[Close]

BLAST of Cmc09g0247081 vs. NCBI nr
Match: KAA0051357.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 474.6 bits (1220), Expect = 6.0e-130
Identity = 241/300 (80.33%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
           MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NK
Sbjct: 684 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 743

Query: 61  LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           LYA FSK                        +KIEA+T W RPSTVSEVRSFLGLAGYY 
Sbjct: 744 LYAKFSKCEFWLKQVSFLGHVVSKARVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 803

Query: 121 RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
           RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSD
Sbjct: 804 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 863

Query: 181 ASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIF 240
           ASKKGL  VLMQQGKVV YASRQLKSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 864 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 923

Query: 241 MDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
            DHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 924 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 983

[Close]

BLAST of Cmc09g0247081 vs. NCBI nr
Match: KAA0042119.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.8 bits (1218), Expect = 1.0e-129
Identity = 241/300 (80.33%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
           MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NK
Sbjct: 73  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 132

Query: 61  LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           LYA FSK                        +KIEA+TSW RPSTVSEVRSFLGLAGYY 
Sbjct: 133 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYR 192

Query: 121 RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
           RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA ILT+PD SGSFVIYSD
Sbjct: 193 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPILTVPDGSGSFVIYSD 252

Query: 181 ASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIF 240
           AS+KGL  VLMQQGKVV YASRQLKSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 253 ASRKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 312

Query: 241 MDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
            DHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHP KAN+V DALSRK SHSAALIT+
Sbjct: 313 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKASHSAALITR 372

[Close]

BLAST of Cmc09g0247081 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-41
Identity = 101/290 (34.83%), Postives = 147/290 (50.69%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
           M FGL NAP  F   MN + +  L+   +V++DDI+ +S +  EH + L ++ E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           L     K                         KIEAI  +P P+   E+++FLGL GYY 
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFMEDFSRIATPFTQLTRKGAPFVWSKACKDS-FQNLKQKLVTASILTIPDCSGSFVIYS 180
           +F+ +F+ IA P T+  +K      +    DS F+ LK  +    IL +PD +  F + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQI 240
           DAS   L  VL Q G  ++Y SR L  HE NY T + EL A+V+  K +RHYL G   +I
Sbjct: 514 DASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEI 573

Query: 241 FMDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSR 266
             DH+ L + +  K+ N +  RW   + ++D +I Y   K N V DALSR
Sbjct: 574 SSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

[Close]

BLAST of Cmc09g0247081 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-41
Identity = 95/305 (31.15%), Postives = 159/305 (52.13%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
           + FGL NAP +F  +++ + ++ +     V+IDDI+ +S+    H ++LR++L +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYANFSKS------------------------KIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           L  N  KS                        K+ AI+  P P++V E++ FLG+  YY 
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFMEDFSRIATPFTQLTR-----------KGAPFVWSKACKDSFQNLKQKLVTASILTIP 180
           +F++D++++A P T LTR              P    +    SF +LK  L ++ IL  P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 DCSGSFVIYSDASKKGLSYVLMQ----QGKVVTYASRQLKSHEENYLTHDLELAAVVFVL 240
             +  F + +DAS   +  VL Q    + + + Y SR L   EENY T + E+ A+++ L
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSL 489

Query: 241 KIWRHYLYGE-KIQIFMDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVV 266
              R YLYG   I+++ DH+ L +    +  N + +RW   +++Y+CE++Y P K+N+V 
Sbjct: 490 DNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVA 549

[Close]

BLAST of Cmc09g0247081 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.0e-39
Identity = 97/303 (32.01%), Postives = 160/303 (52.81%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETL---- 60
           + FGL NA ++F   ++ V ++ +     V++DD++ +S+ E +H  H+  +L+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  -RANKLYANFSK-------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
            R ++    F K                    K++AI  +P P  V +VRSFLGLA YY 
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFMEDFSRIATPFTQLTR-----------KGAPFVWSKACKDSFQNLKQKLVTAS-ILTI 180
            F++DF+ IA P T + +           K  P  +++  +++FQ L+  L +   IL  
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488

Query: 181 PDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIW 240
           PD    F + +DAS  G+  VL Q+G+ +T  SR LK  E+NY T++ EL A+V+ L   
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKL 548

Query: 241 RHYLYGEK-IQIFMDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDAL 267
           +++LYG + I IF DH+ L +    +  N + +RW   +  ++ ++ Y P K N V DAL
Sbjct: 549 QNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADAL 608

[Close]

BLAST of Cmc09g0247081 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.3e-39
Identity = 99/290 (34.14%), Postives = 149/290 (51.38%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEH------------EEH 60
           M FGL NAP  F   MN + +  L+   +V++DDI+ +S +  EH            + +
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LRMILETLRANKLYANF------------SKSKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           L++ L+     K  ANF            +  K++AI S+P P+   E+R+FLGL GYY 
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFMEDFSRIATPFTQLTRKGAPFVWSK-ACKDSFQNLKQKLVTASILTIPDCSGSFVIYS 180
           +F+ +++ IA P T   +K       K    ++F+ LK  ++   IL +PD    FV+ +
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQI 240
           DAS   L  VL Q G  +++ SR L  HE NY   + EL A+V+  K +RHYL G +  I
Sbjct: 513 DASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572

Query: 241 FMDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSR 266
             DH+ L++    KE   +  RW   + +Y  +I Y   K N V DALSR
Sbjct: 573 ASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

[Close]

BLAST of Cmc09g0247081 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-31
Identity = 89/303 (29.37%), Postives = 146/303 (48.18%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
           M +G++ AP  F   +N +  +  ++ V+ ++DDIL +SK+E EH +H++ +L+ L+   
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           L  N +K                          I+ +  W +P    E+R FLG   Y  
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
           +F+   S++  P   L +K   + W+     + +N+KQ LV+  +L   D S   ++ +D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASKKGLSYVLMQQGK-----VVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYG- 240
           AS   +  VL Q+        V Y S ++   + NY   D E+ A++  LK WRHYL   
Sbjct: 714 ASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLEST 773

Query: 241 -EKIQIFMDHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKV 271
            E  +I  DH++L    T +    N R  RW   ++D++ EI Y P  AN + DALSR V
Sbjct: 774 IEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIV 833

[Close]

BLAST of Cmc09g0247081 vs. ExPASy TrEMBL
Match: A0A5A7UT37 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1186G00020 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.1e-133
Identity = 240/276 (86.96%), Postives = 256/276 (92.75%), Query Frame = 0


Query: 1    MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
            MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHE+HLRM+L+TLR NK
Sbjct: 739  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEKHLRMVLQTLRDNK 798

Query: 61   LYANFSKSKIEAITSWPRPSTVSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFV 120
            LYA FSKSKIEA+T W  PSTVSEVRSFLGLAGYY RF+E+FSRIATP TQLTRKGAPFV
Sbjct: 799  LYAKFSKSKIEAVTGWTGPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFV 858

Query: 121  WSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSDASKKGLSYVLMQQGKVVTYASRQL 180
            WSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSDASKKGL  VLMQQGKVV YASRQL
Sbjct: 859  WSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQL 918

Query: 181  KSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIFMDHKSLKYFFTQKELNMRQRRWLE 240
            KSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF DHKSLKYFFTQKELNMRQRRWLE
Sbjct: 919  KSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRRWLE 978

Query: 241  LVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
            LVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 979  LVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 1014

[Close]

BLAST of Cmc09g0247081 vs. ExPASy TrEMBL
Match: A0A5A7TSQ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00170 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.6e-131
Identity = 242/300 (80.67%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1    MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
            MSFGLTNAP VFMNLMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NK
Sbjct: 2399 MSFGLTNAPAVFMNLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 2458

Query: 61   LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
            LYA FSK                        +KIEA+T W RPSTVSEVRSFLGLAGYY 
Sbjct: 2459 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 2518

Query: 121  RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
            RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSD
Sbjct: 2519 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 2578

Query: 181  ASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIF 240
            ASKKGL  VLMQQGKVV YASRQLKSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 2579 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 2638

Query: 241  MDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
             DHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 2639 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 2698

[Close]

BLAST of Cmc09g0247081 vs. ExPASy TrEMBL
Match: A0A5A7UAA8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00800 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 2.9e-130
Identity = 241/300 (80.33%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
           MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NK
Sbjct: 684 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 743

Query: 61  LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           LYA FSK                        +KIEA+T W RPSTVSEVRSFLGLAGYY 
Sbjct: 744 LYAKFSKCEFWLKQVSFLGHVVSKARVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 803

Query: 121 RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
           RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSD
Sbjct: 804 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 863

Query: 181 ASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIF 240
           ASKKGL  VLMQQGKVV YASRQLKSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 864 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 923

Query: 241 MDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
            DHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 924 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 983

[Close]

BLAST of Cmc09g0247081 vs. ExPASy TrEMBL
Match: A0A5A7U330 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00040 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 2.9e-130
Identity = 241/300 (80.33%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1   MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
           MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTE EHEEHLRM+L+TLR NK
Sbjct: 694 MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 753

Query: 61  LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
           LYA FSK                        +KIEA+T W RPSTVSEVRSFLGLAGYY 
Sbjct: 754 LYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 813

Query: 121 RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
           RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSD
Sbjct: 814 RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 873

Query: 181 ASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIF 240
           ASKKGL  VLMQQGKVV YASRQLKSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 874 ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 933

Query: 241 MDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
            DHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 934 TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 993

[Close]

BLAST of Cmc09g0247081 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 5.0e-130
Identity = 241/300 (80.33%), Postives = 257/300 (85.67%), Query Frame = 0


Query: 1    MSFGLTNAPTVFMNLMNKVFKDFLDTFVIVFIDDILKYSKTEVEHEEHLRMILETLRANK 60
            MSFGLTNAP VFM+LMN+VF++FLDTFVIVFIDDIL YSKTEVEHEEHLRM+L+TLR NK
Sbjct: 728  MSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNK 787

Query: 61   LYANFSK------------------------SKIEAITSWPRPSTVSEVRSFLGLAGYYH 120
            LYA F K                        +KIEA+T W RPSTVSEVRSFLGLAGYY 
Sbjct: 788  LYAKFLKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYR 847

Query: 121  RFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASILTIPDCSGSFVIYSD 180
            RF+E+FSRIATP TQLTRKGAPFVWSKAC+DSFQNLKQKLVTA +LT+PD SGSFVIYSD
Sbjct: 848  RFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTVPDGSGSFVIYSD 907

Query: 181  ASKKGLSYVLMQQGKVVTYASRQLKSHEENYLTHDLELAAVVFVLKIWRHYLYGEKIQIF 240
            ASKKGL  VLMQQGKVV YASRQLKSHE+NY THDLELAAVVF LKIWRHYLYGEKIQIF
Sbjct: 908  ASKKGLGCVLMQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIF 967

Query: 241  MDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPSKANIVVDALSRKVSHSAALITK 277
             DHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHP KAN+V DALSRKVSHSAALIT+
Sbjct: 968  TDHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR 1027

[Close]

BLAST of Cmc09g0247081 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 7.6e-14
Identity = 40/131 (30.53%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 48  HLRMILETLRANKLYANFSK--------------------------SKIEAITSWPRPST 107
           HL M+L+    ++ YAN  K                          +K+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 108 VSEVRSFLGLAGYYHRFMEDFSRIATPFTQLTRKGAPFVWSKACKDSFQNLKQKLVTASI 153
            +E+R FLGL GYY RF++++ +I  P T+L +K +   W++    +F+ LK  + T  +
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALKGAVTTLPV 122

The following BLAST results are available for this feature:

BLAST of Cmc09g0247081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059062.1	4.4e-133	86.96	pol protein [Cucumis melo var. makuwa]	[more]
KAA0046094.1	1.6e-130	80.67	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0048687.1	6.0e-130	80.33	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051357.1	6.0e-130	80.33	pol protein [Cucumis melo var. makuwa]	[more]
KAA0042119.1	1.0e-129	80.33	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0247081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.9e-41	34.83	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	4.1e-41	31.15	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P10401	1.0e-39	32.01	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P20825	2.3e-39	34.14	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	2.3e-31	29.37	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc09g0247081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT37	2.1e-133	86.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7TSQ8	7.6e-131	80.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5A7UAA8	2.9e-130	80.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7U330	2.9e-130	80.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7T190	5.0e-130	80.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]

BLAST of Cmc09g0247081 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	7.6e-14	30.53	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 147..245 e-value: 1.7E-30 score: 105.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 71..158 e-value: 6.2E-30 score: 105.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..70 e-value: 4.5E-23 score: 83.5
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..90 e-value: 1.5E-13 score: 50.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..93 score: 9.101107
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 58..266
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 58..266
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..90 e-value: 7.87919E-28 score: 103.444
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 152..267 e-value: 1.52029E-50 score: 160.351
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0247081.1	Cmc09g0247081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding