Cmc09g0246581 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0246581
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr09: 10519029 .. 10519883 (-)
RNA-Seq Expression	Cmc09g0246581
Synteny	Cmc09g0246581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTAGTTTAAGACACCTACATGTTTGGGGTTGTCAAGCGGAAGTAAGAATGTATAATCCACATGAAAAGAAATTGGATTCAAGAACAACCAGTGGTTTCTTCATTGGTTATCTAGAAAAATCAAAAGGGTATAGATTTTATTGTCCTAACCACAGTACGAGAATAGTTGAAACTGGAAATGTAAGGTTCATTGAGAATGACATAATTAGTGGGAGTTTGGAACCGCGAAAAGTGGAAATTCAAGAAGTTAGGGTGGAAATTCCTTCATCTATAACTTCTTGTCAAGTTGTTGTTCCTGTAGTTGTTGACTCTGTTAACAATCCACAAGAACAACAAATTAATGGTCAAACACCACATAATGATATTGTAACAAATGAACTTGTAACTGAGGGACCACAAGAAATAGAATTAAGAATATCTGTAAGATTAAGAAGATCAGCTATTTCTGATGACTATTTGGTTTATTTGCATGAGTCAGAATTTGACTTAAGCATTGATAATGATCCAGTTTCATTTTCACAAGCCATTAAAGGAGATAATTCTACCAAATGGTTAGATGCCATGAAAGAAGAGTTAAAATCTACGAATGATAATGAAGTCTGGGATTTTGTAGAATTGCCTAAAGAAAGTAAAAGAATTGGGTGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGGCAATATTGAACGATACAAGGCTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAGACTTTTTCTCCTGTCTCGAAAAAGGACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGATGTAA

mRNA sequence

ATGAAATCTAGTTTAAGACACCTACATGTTTGGGGTTGTCAAGCGGAAGTAAGAATGTATAATCCACATGAAAAGAAATTGGATTCAAGAACAACCAGTGGTTTCTTCATTGGTTATCTAGAAAAATCAAAAGGGTATAGATTTTATTGTCCTAACCACAGTACGAGAATAGTTGAAACTGGAAATGTAAGGTTCATTGAGAATGACATAATTAGTGGGAGTTTGGAACCGCGAAAAGTGGAAATTCAAGAAGTTAGGGTGGAAATTCCTTCATCTATAACTTCTTGTCAAGTTGTTGTTCCTGTAGTTGTTGACTCTGTTAACAATCCACAAGAACAACAAATTAATGGTCAAACACCACATAATGATATTGTAACAAATGAACTTGTAACTGAGGGACCACAAGAAATAGAATTAAGAATATCTGTAAGATTAAGAAGATCAGCTATTTCTGATGACTATTTGGTTTATTTGCATGAGTCAGAATTTGACTTAAGCATTGATAATGATCCAGTTTCATTTTCACAAGCCATTAAAGGAGATAATTCTACCAAATGGTTAGATGCCATGAAAGAAGAGTTAAAATCTACGAATGATAATGAAGTCTGGGATTTTGTAGAATTGCCTAAAGAAAGTAAAAGAATTGGGTGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGGCAATATTGAACGATACAAGGCTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAGACTTTTTCTCCTGTCTCGAAAAAGGACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGATGTAA

Coding sequence (CDS)

ATGAAATCTAGTTTAAGACACCTACATGTTTGGGGTTGTCAAGCGGAAGTAAGAATGTATAATCCACATGAAAAGAAATTGGATTCAAGAACAACCAGTGGTTTCTTCATTGGTTATCTAGAAAAATCAAAAGGGTATAGATTTTATTGTCCTAACCACAGTACGAGAATAGTTGAAACTGGAAATGTAAGGTTCATTGAGAATGACATAATTAGTGGGAGTTTGGAACCGCGAAAAGTGGAAATTCAAGAAGTTAGGGTGGAAATTCCTTCATCTATAACTTCTTGTCAAGTTGTTGTTCCTGTAGTTGTTGACTCTGTTAACAATCCACAAGAACAACAAATTAATGGTCAAACACCACATAATGATATTGTAACAAATGAACTTGTAACTGAGGGACCACAAGAAATAGAATTAAGAATATCTGTAAGATTAAGAAGATCAGCTATTTCTGATGACTATTTGGTTTATTTGCATGAGTCAGAATTTGACTTAAGCATTGATAATGATCCAGTTTCATTTTCACAAGCCATTAAAGGAGATAATTCTACCAAATGGTTAGATGCCATGAAAGAAGAGTTAAAATCTACGAATGATAATGAAGTCTGGGATTTTGTAGAATTGCCTAAAGAAAGTAAAAGAATTGGGTGTAAATGGGTCTTTAAGACCAAACGTGACTCAAATGGCAATATTGAACGATACAAGGCTAGACTTGTTGCCAAAGGTTATACTCAGAAAGATGGCATTGACTACAAAGAGACTTTTTCTCCTGTCTCGAAAAAGGACTCATTAAGAATTATTATGGCTTTGGTAGCTCATTATGATTTAGAGCTTCATCAAATGGATGTGATGTAA

Protein sequence

MKSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPHNDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVM

Homology

[Close]

BLAST of Cmc09g0246581 vs. NCBI nr
Match: TYK04201.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 532.7 bits (1371), Expect = 1.9e-147
Identity = 265/282 (93.97%), Postives = 271/282 (96.10%), Query Frame = 0


Query: 2   KSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETG 61
           K SLRHL+VWGCQAE R+YNPHEKK DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVETG
Sbjct: 353 KPSLRHLYVWGCQAEARIYNPHEKKQDSRTTSGFFIGYSEKSKGYRFYCPNHSTRIVETG 412

Query: 62  NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 121
           NVRFIENDII+GSLEPRKVEIQEVRVEIPSSITS Q+VVPVVVDSVNNPQEQQINGQTPH
Sbjct: 413 NVRFIENDIINGSLEPRKVEIQEVRVEIPSSITSSQIVVPVVVDSVNNPQEQQINGQTPH 472

Query: 122 NDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 181
           NDIVTNE VTEGPQEIELR SVR RRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD
Sbjct: 473 NDIVTNEPVTEGPQEIELRRSVRSRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 532

Query: 182 NSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAK 241
           NSTKWLDAMKEELKS NDNEVWD VELPK+SKR+GCKWVFKTKRDSNGNIER KARLVAK
Sbjct: 533 NSTKWLDAMKEELKSMNDNEVWDLVELPKKSKRVGCKWVFKTKRDSNGNIERCKARLVAK 592

Query: 242 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV
Sbjct: 593 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 634

[Close]

BLAST of Cmc09g0246581 vs. NCBI nr
Match: KAA0047436.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ98630.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 531.9 bits (1369), Expect = 3.3e-147
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 19  MYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLEPR 78
           MYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLEPR
Sbjct: 1   MYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLEPR 60

Query: 79  KVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPHNDIVTNELVTEGPQEIE 138
           KVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPHNDIVTNELVTEGPQEIE
Sbjct: 61  KVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPHNDIVTNELVTEGPQEIE 120

Query: 139 LRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTN 198
           LRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTN
Sbjct: 121 LRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTN 180

Query: 199 DNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPV 258
           DNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPV
Sbjct: 181 DNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPV 240

Query: 259 SKKDSLRIIMALVAHYDLELHQMDVM 285
           SKKDSLRIIMALVAHYDLELHQMDVM
Sbjct: 241 SKKDSLRIIMALVAHYDLELHQMDVM 266

[Close]

BLAST of Cmc09g0246581 vs. NCBI nr
Match: KAA0052755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 530.8 bits (1366), Expect = 7.3e-147
Identity = 264/282 (93.62%), Postives = 271/282 (96.10%), Query Frame = 0


Query: 2   KSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETG 61
           K SLRHL+VWGCQAE R+YNPHEKK DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVETG
Sbjct: 353 KPSLRHLYVWGCQAEARIYNPHEKKQDSRTTSGFFIGYSEKSKGYRFYCPNHSTRIVETG 412

Query: 62  NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 121
           NVRFIENDII+GSLEPRKVEIQEVRVEIPSSITS Q+VVPVVVDSVNNPQEQQINGQTPH
Sbjct: 413 NVRFIENDIINGSLEPRKVEIQEVRVEIPSSITSSQIVVPVVVDSVNNPQEQQINGQTPH 472

Query: 122 NDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 181
           NDIVTNE VTEGPQEIELR SVR RRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKG+
Sbjct: 473 NDIVTNEPVTEGPQEIELRRSVRSRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGN 532

Query: 182 NSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAK 241
           NSTKWLDAMKEELKS NDNEVWD VELPK+SKR+GCKWVFKTKRDSNGNIER KARLVAK
Sbjct: 533 NSTKWLDAMKEELKSMNDNEVWDLVELPKKSKRVGCKWVFKTKRDSNGNIERCKARLVAK 592

Query: 242 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV
Sbjct: 593 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 634

[Close]

BLAST of Cmc09g0246581 vs. NCBI nr
Match: KAA0032875.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 523.5 bits (1347), Expect = 1.2e-144
Identity = 262/282 (92.91%), Postives = 268/282 (95.04%), Query Frame = 0


Query: 2   KSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETG 61
           K SLRHLHVWGCQAEV++YNPHEKKLDSRTTSGFFIGY EKSKGYRFYCPNHSTRIVE G
Sbjct: 209 KPSLRHLHVWGCQAEVKIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVEIG 268

Query: 62  NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 121
           NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITS QVVVPVVV SVNNPQEQQIN QTPH
Sbjct: 269 NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSSQVVVPVVVGSVNNPQEQQINIQTPH 328

Query: 122 NDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 181
           NDIVTNE VTEGPQEIELR SVR RRSAISDDYLVYLHESEFDLSID+DPVSFSQAIKGD
Sbjct: 329 NDIVTNEPVTEGPQEIELRRSVRSRRSAISDDYLVYLHESEFDLSIDDDPVSFSQAIKGD 388

Query: 182 NSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAK 241
           NST WLDAMKEELKS NDNEVWD VELPKESKR+ CKWVFKTKRDSN NIE+YKARLVAK
Sbjct: 389 NSTTWLDAMKEELKSMNDNEVWDLVELPKESKRVWCKWVFKTKRDSNSNIEQYKARLVAK 448

Query: 242 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           GYTQKDGIDYKETFSPVSKKDSLRI+MALVAHYDLELHQMDV
Sbjct: 449 GYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHQMDV 490

[Close]

BLAST of Cmc09g0246581 vs. NCBI nr
Match: KAA0061857.1 (copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 520.0 bits (1338), Expect = 1.3e-143
Identity = 259/282 (91.84%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 2   KSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETG 61
           K SLRHLH+WGCQAEVR+YNPHEKKLDSRTTS FFIGYLEKSK YRFYCPNHSTRIVETG
Sbjct: 302 KPSLRHLHIWGCQAEVRIYNPHEKKLDSRTTSVFFIGYLEKSKRYRFYCPNHSTRIVETG 361

Query: 62  NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 121
           NVRFIENDIISGSLE RKVEIQEVRVEIPSSITS QVVVPV+VDSVNNPQE QINGQTPH
Sbjct: 362 NVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVVVPVIVDSVNNPQELQINGQTPH 421

Query: 122 NDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 181
           NDIVTNE VTEGPQEIELR  VR RR  ISDDYLVYLHESEFDLSIDNDPVSFSQAIK D
Sbjct: 422 NDIVTNEPVTEGPQEIELRRFVRSRRLVISDDYLVYLHESEFDLSIDNDPVSFSQAIKVD 481

Query: 182 NSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAK 241
           NSTKWLDAMKEELKS NDNEVWD VELPKESKR+GCKWVF+TKRDSNGNIERYKARLVAK
Sbjct: 482 NSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFETKRDSNGNIERYKARLVAK 541

Query: 242 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           GYTQKDGIDYKETFSPVSKKDSLRIIMAL+AHYDL++HQMDV
Sbjct: 542 GYTQKDGIDYKETFSPVSKKDSLRIIMALIAHYDLKIHQMDV 583

[Close]

BLAST of Cmc09g0246581 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-33
Identity = 101/296 (34.12%), Postives = 154/296 (52.03%), Query Frame = 0


Query: 4   SLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETGNV 63
           S  HL V+GC+A   +      KLD ++    FIGY ++  GYR + P    +++ + +V
Sbjct: 644 SYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDP-VKKKVIRSRDV 703

Query: 64  RFIENDIISGSLEPRKVE--IQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 123
            F E+++ + +    KV+  I    V IPS+  +     P   +S  +   +Q  G+ P 
Sbjct: 704 VFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNN-----PTSAESTTDEVSEQ--GEQPG 763

Query: 124 NDIVTNELVTEGPQEIE-----------LRISVRLR---RSAISDDYLVYLHESEFDLSI 183
             I   E + EG +E+E           LR S R R   R   S +Y++        +S 
Sbjct: 764 EVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVL--------ISD 823

Query: 184 DNDPVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDS 243
           D +P S  + +      + + AM+EE++S   N  +  VELPK  + + CKWVFK K+D 
Sbjct: 824 DREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDG 883

Query: 244 NGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           +  + RYKARLV KG+ QK GID+ E FSPV K  S+R I++L A  DLE+ Q+DV
Sbjct: 884 DCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDV 923

[Close]

BLAST of Cmc09g0246581 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 0


Query: 166  SIDND-PVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTK 225
            +I ND P SF +    D+ + W +A+  EL +   N  W   + P+    +  +WVF  K
Sbjct: 885  TIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVK 944

Query: 226  RDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
             +  GN  RYKARLVA+G+TQK  IDY+ETF+PV++  S R I++LV  Y+L++HQMDV
Sbjct: 945  YNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDV 1003

[Close]

BLAST of Cmc09g0246581 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-20
Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 165  LSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELPKESKRI-GCKWVFKT 224
            L+ +++P +  QA+K +   +W +AM  E+ +   N  WD V  P     I GC+W+F  
Sbjct: 950  LAAESEPRTAIQALKDE---RWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTK 1009

Query: 225  KRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
            K +S+G++ RYKARLVAKGY Q+ G+DY ETFSPV K  S+RI++ +       + Q+DV
Sbjct: 1010 KYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1066

[Close]

BLAST of Cmc09g0246581 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-20
Identity = 67/195 (34.36%), Postives = 99/195 (50.77%), Query Frame = 0


Query: 90   PSSITSCQVVVPVVVDSVNNPQEQQINGQTPHNDIVTNELVTEGPQEIELRISVRLRRSA 149
            P+S +S     P +   +  P   Q+N Q P N   T+ + T        R    +R+  
Sbjct: 876  PNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVN---THSMAT--------RAKDGIRKPN 935

Query: 150  ISDDYLVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELP 209
                Y          L+ +++P +  QA+K D   +W  AM  E+ +   N  WD V  P
Sbjct: 936  QKYSYAT-------SLAANSEPRTAIQAMKDD---RWRQAMGSEINAQIGNHTWDLVPPP 995

Query: 210  KESKRI-GCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIM 269
              S  I GC+W+F  K +S+G++ RYKARLVAKGY Q+ G+DY ETFSPV K  S+RI++
Sbjct: 996  PPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVL 1049

Query: 270  ALVAHYDLELHQMDV 284
             +       + Q+DV
Sbjct: 1056 GVAVDRSWPIRQLDV 1049

[Close]

BLAST of Cmc09g0246581 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.8e-16
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 166 SIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKR 225
           +I  +P S   A+K      W  AM+EEL + + N+ W  V  P     +GCKWVFKTK 
Sbjct: 23  TIKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKL 82

Query: 226 DSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIM 269
            S+G ++R KARLVAKG+ Q++GI + ET+SPV +  ++R I+
Sbjct: 83  HSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122

[Close]

BLAST of Cmc09g0246581 vs. ExPASy TrEMBL
Match: A0A5D3BWW5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00300 PE=4 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 9.3e-148
Identity = 265/282 (93.97%), Postives = 271/282 (96.10%), Query Frame = 0


Query: 2   KSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETG 61
           K SLRHL+VWGCQAE R+YNPHEKK DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVETG
Sbjct: 353 KPSLRHLYVWGCQAEARIYNPHEKKQDSRTTSGFFIGYSEKSKGYRFYCPNHSTRIVETG 412

Query: 62  NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 121
           NVRFIENDII+GSLEPRKVEIQEVRVEIPSSITS Q+VVPVVVDSVNNPQEQQINGQTPH
Sbjct: 413 NVRFIENDIINGSLEPRKVEIQEVRVEIPSSITSSQIVVPVVVDSVNNPQEQQINGQTPH 472

Query: 122 NDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 181
           NDIVTNE VTEGPQEIELR SVR RRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD
Sbjct: 473 NDIVTNEPVTEGPQEIELRRSVRSRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 532

Query: 182 NSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAK 241
           NSTKWLDAMKEELKS NDNEVWD VELPK+SKR+GCKWVFKTKRDSNGNIER KARLVAK
Sbjct: 533 NSTKWLDAMKEELKSMNDNEVWDLVELPKKSKRVGCKWVFKTKRDSNGNIERCKARLVAK 592

Query: 242 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV
Sbjct: 593 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 634

[Close]

BLAST of Cmc09g0246581 vs. ExPASy TrEMBL
Match: A0A5A7TZN1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00060 PE=4 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.6e-147
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 19  MYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLEPR 78
           MYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLEPR
Sbjct: 1   MYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETGNVRFIENDIISGSLEPR 60

Query: 79  KVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPHNDIVTNELVTEGPQEIE 138
           KVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPHNDIVTNELVTEGPQEIE
Sbjct: 61  KVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPHNDIVTNELVTEGPQEIE 120

Query: 139 LRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTN 198
           LRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTN
Sbjct: 121 LRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTN 180

Query: 199 DNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPV 258
           DNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPV
Sbjct: 181 DNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAKGYTQKDGIDYKETFSPV 240

Query: 259 SKKDSLRIIMALVAHYDLELHQMDVM 285
           SKKDSLRIIMALVAHYDLELHQMDVM
Sbjct: 241 SKKDSLRIIMALVAHYDLELHQMDVM 266

[Close]

BLAST of Cmc09g0246581 vs. ExPASy TrEMBL
Match: A0A5A7UG95 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00040 PE=4 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 3.5e-147
Identity = 264/282 (93.62%), Postives = 271/282 (96.10%), Query Frame = 0


Query: 2   KSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETG 61
           K SLRHL+VWGCQAE R+YNPHEKK DSRTTSGFFIGY EKSKGYRFYCPNHSTRIVETG
Sbjct: 353 KPSLRHLYVWGCQAEARIYNPHEKKQDSRTTSGFFIGYSEKSKGYRFYCPNHSTRIVETG 412

Query: 62  NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 121
           NVRFIENDII+GSLEPRKVEIQEVRVEIPSSITS Q+VVPVVVDSVNNPQEQQINGQTPH
Sbjct: 413 NVRFIENDIINGSLEPRKVEIQEVRVEIPSSITSSQIVVPVVVDSVNNPQEQQINGQTPH 472

Query: 122 NDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 181
           NDIVTNE VTEGPQEIELR SVR RRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKG+
Sbjct: 473 NDIVTNEPVTEGPQEIELRRSVRSRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGN 532

Query: 182 NSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAK 241
           NSTKWLDAMKEELKS NDNEVWD VELPK+SKR+GCKWVFKTKRDSNGNIER KARLVAK
Sbjct: 533 NSTKWLDAMKEELKSMNDNEVWDLVELPKKSKRVGCKWVFKTKRDSNGNIERCKARLVAK 592

Query: 242 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV
Sbjct: 593 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 634

[Close]

BLAST of Cmc09g0246581 vs. ExPASy TrEMBL
Match: A0A5A7SUJ2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00400 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 5.6e-145
Identity = 262/282 (92.91%), Postives = 268/282 (95.04%), Query Frame = 0


Query: 2   KSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETG 61
           K SLRHLHVWGCQAEV++YNPHEKKLDSRTTSGFFIGY EKSKGYRFYCPNHSTRIVE G
Sbjct: 209 KPSLRHLHVWGCQAEVKIYNPHEKKLDSRTTSGFFIGYPEKSKGYRFYCPNHSTRIVEIG 268

Query: 62  NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 121
           NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITS QVVVPVVV SVNNPQEQQIN QTPH
Sbjct: 269 NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSSQVVVPVVVGSVNNPQEQQINIQTPH 328

Query: 122 NDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 181
           NDIVTNE VTEGPQEIELR SVR RRSAISDDYLVYLHESEFDLSID+DPVSFSQAIKGD
Sbjct: 329 NDIVTNEPVTEGPQEIELRRSVRSRRSAISDDYLVYLHESEFDLSIDDDPVSFSQAIKGD 388

Query: 182 NSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAK 241
           NST WLDAMKEELKS NDNEVWD VELPKESKR+ CKWVFKTKRDSN NIE+YKARLVAK
Sbjct: 389 NSTTWLDAMKEELKSMNDNEVWDLVELPKESKRVWCKWVFKTKRDSNSNIEQYKARLVAK 448

Query: 242 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           GYTQKDGIDYKETFSPVSKKDSLRI+MALVAHYDLELHQMDV
Sbjct: 449 GYTQKDGIDYKETFSPVSKKDSLRIVMALVAHYDLELHQMDV 490

[Close]

BLAST of Cmc09g0246581 vs. ExPASy TrEMBL
Match: A0A5A7V4M3 (Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00420 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 6.2e-144
Identity = 259/282 (91.84%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 2   KSSLRHLHVWGCQAEVRMYNPHEKKLDSRTTSGFFIGYLEKSKGYRFYCPNHSTRIVETG 61
           K SLRHLH+WGCQAEVR+YNPHEKKLDSRTTS FFIGYLEKSK YRFYCPNHSTRIVETG
Sbjct: 302 KPSLRHLHIWGCQAEVRIYNPHEKKLDSRTTSVFFIGYLEKSKRYRFYCPNHSTRIVETG 361

Query: 62  NVRFIENDIISGSLEPRKVEIQEVRVEIPSSITSCQVVVPVVVDSVNNPQEQQINGQTPH 121
           NVRFIENDIISGSLE RKVEIQEVRVEIPSSITS QVVVPV+VDSVNNPQE QINGQTPH
Sbjct: 362 NVRFIENDIISGSLELRKVEIQEVRVEIPSSITSSQVVVPVIVDSVNNPQELQINGQTPH 421

Query: 122 NDIVTNELVTEGPQEIELRISVRLRRSAISDDYLVYLHESEFDLSIDNDPVSFSQAIKGD 181
           NDIVTNE VTEGPQEIELR  VR RR  ISDDYLVYLHESEFDLSIDNDPVSFSQAIK D
Sbjct: 422 NDIVTNEPVTEGPQEIELRRFVRSRRLVISDDYLVYLHESEFDLSIDNDPVSFSQAIKVD 481

Query: 182 NSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAK 241
           NSTKWLDAMKEELKS NDNEVWD VELPKESKR+GCKWVF+TKRDSNGNIERYKARLVAK
Sbjct: 482 NSTKWLDAMKEELKSMNDNEVWDLVELPKESKRVGCKWVFETKRDSNGNIERYKARLVAK 541

Query: 242 GYTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           GYTQKDGIDYKETFSPVSKKDSLRIIMAL+AHYDL++HQMDV
Sbjct: 542 GYTQKDGIDYKETFSPVSKKDSLRIIMALIAHYDLKIHQMDV 583

[Close]

BLAST of Cmc09g0246581 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-25
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 186 WLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKRDSNGNIERYKARLVAKGYTQ 245
           W  AM +E+ +      W+   LP   K IGCKWV+K K +S+G IERYKARLVAKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 246 KDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDV 284
           ++GID+ ETFSPV K  S+++I+A+ A Y+  LHQ+D+
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDI 195

[Close]

BLAST of Cmc09g0246581 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-17
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 166 SIDNDPVSFSQAIKGDNSTKWLDAMKEELKSTNDNEVWDFVELPKESKRIGCKWVFKTKR 225
           +I  +P S   A+K      W  AM+EEL + + N+ W  V  P     +GCKWVFKTK 
Sbjct: 23  TIKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKL 82

Query: 226 DSNGNIERYKARLVAKGYTQKDGIDYKETFSPVSKKDSLRIIM 269
            S+G ++R KARLVAKG+ Q++GI + ET+SPV +  ++R I+
Sbjct: 83  HSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122

The following BLAST results are available for this feature:

BLAST of Cmc09g0246581 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04201.1	1.9e-147	93.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047436.1	3.3e-147	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0052755.1	7.3e-147	93.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0032875.1	1.2e-144	92.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0061857.1	1.3e-143	91.84	copia-like pol polyprotein [Cucumis melo var. makuwa] >TYK15399.1 copia-like pol...	[more]

BLAST of Cmc09g0246581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.5e-33	34.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.1e-20	43.70	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.4e-20	41.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.4e-20	34.36	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	2.8e-16	43.69	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc09g0246581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWW5	9.3e-148	93.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TZN1	1.6e-147	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UG95	3.5e-147	93.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SUJ2	5.6e-145	92.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V4M3	6.2e-144	91.84	Copia-like pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Cmc09g0246581 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-25	53.06	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.0e-17	43.69	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 200..283 e-value: 4.9E-26 score: 91.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 170..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0246581.1	Cmc09g0246581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0009231	riboflavin biosynthetic process
molecular_function	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0004491	methylmalonate-semialdehyde dehydrogenase (acylating) activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding