Cmc09g0246481 (gene) Melon (Charmono) v1.1

Overview
NameCmc09g0246481
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
LocationCMiso1.1chr09: 10437357 .. 10437662 (-)
RNA-Seq ExpressionCmc09g0246481
SyntenyCmc09g0246481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAACATTCCCTATGCTTATGCTGTTGGGAGCCTGATGTATGCTATGTCATGTATTAGACCTGACATTTGCTATTCAGTGGGGATAGTTAGTAGATATCAGTCCAATCCTGGATGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGCTCGTGTATGGTTCTAAGGATATGATCCTTATTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATTAGGATCAGTTTTCACTCTTAATGGAGGAGCAGTAGTATGA

mRNA sequence

ATGAGTAACATTCCCTATGCTTATGCTGTTGGGAGCCTGATGTATGCTATGTCATGTATTAGACCTGACATTTGCTATTCAGTGGGGATAGTTAGTAGATATCAGTCCAATCCTGGATGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGCTCGTGTATGGTTCTAAGGATATGATCCTTATTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATTAGGATCAGTTTTCACTCTTAATGGAGGAGCAGTAGTATGA

Coding sequence (CDS)

ATGAGTAACATTCCCTATGCTTATGCTGTTGGGAGCCTGATGTATGCTATGTCATGTATTAGACCTGACATTTGCTATTCAGTGGGGATAGTTAGTAGATATCAGTCCAATCCTGGATGTGATCATTGGACAACCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGCTCGTGTATGGTTCTAAGGATATGATCCTTATTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATTAGGATCAGTTTTCACTCTTAATGGAGGAGCAGTAGTATGA

Protein sequence

MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV
Homology
BLAST of Cmc09g0246481 vs. NCBI nr
Match: KAA0047426.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK04135.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 210.7 bits (535), Expect = 5.9e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM
Sbjct: 47  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 106

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV
Sbjct: 107 LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 147

BLAST of Cmc09g0246481 vs. NCBI nr
Match: TYK06386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNIPYAYAVGSLMYAM C RPDICYSVGIVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKD+ILIGYTDSDFQTDKDARKST GSVFTLNGGAVV
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVV 251

BLAST of Cmc09g0246481 vs. NCBI nr
Match: KAA0050132.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-45
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNI YAYAVGSLMYAM C RPDICYSVGIVSRYQSNPG DHWT +KNILKYLRRTKDYM
Sbjct: 119 MSNISYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAIKNILKYLRRTKDYM 178

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKD+ILIGYTDSDFQTDKDARKST GSVFTLNGGAVV
Sbjct: 179 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVV 219

BLAST of Cmc09g0246481 vs. NCBI nr
Match: KAA0062116.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44
Identity = 93/101 (92.08%), Postives = 94/101 (93.07%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNIPYA AVGSLMYAM C RPDICYSVGIV RYQSNPG DHWTTVKNILKYLRRTKDYM
Sbjct: 19  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVIRYQSNPGRDHWTTVKNILKYLRRTKDYM 78

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKD+ILIGYTDSDFQTDKDARKST  SVFTLNGGAVV
Sbjct: 79  LVYGSKDLILIGYTDSDFQTDKDARKSTSRSVFTLNGGAVV 119

BLAST of Cmc09g0246481 vs. NCBI nr
Match: TYK29682.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 5.4e-44
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNIPYA+AVGSLMYAM C RPDICY V IVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 489 MSNIPYAFAVGSLMYAMLCTRPDICYLVEIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 548

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKD+IL GYTDSDFQTDKDARKST GSVFTLNGGAVV
Sbjct: 549 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVV 589

BLAST of Cmc09g0246481 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.9e-26
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query: 1    MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
            M+ +PY+ AVGSLMYAM C RPDI ++VG+VSR+  NPG +HW  VK IL+YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV 101
            L +G  D IL GYTD+D   D D RKS+ G +FT +GGA+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAI 1205

BLAST of Cmc09g0246481 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-18
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           M N+PY  AVG++MY M   RPD+  +VG++S++ S+P   HW  +K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSKDMI-LIGYTDSDFQTDKDARKSTLGSVFTLNGGAV 101
           L +       L+GY+D+D+  D ++R+ST G +F LNGG V
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCV 101

BLAST of Cmc09g0246481 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-08
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 6    YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDY-MLVYG 65
            Y   VGSL Y ++  RPD+ Y+V  +S+Y   P  DHW  +K +L+YL  T D+ + +  
Sbjct: 1228 YRGIVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SKDMILIGYTDSDFQTDKDARKSTLGSVFTL 96
               + L  Y+D+D+  D D   ST G +  L
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYL 1317

BLAST of Cmc09g0246481 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 33/97 (34.02%), Postives = 46/97 (47.42%), Query Frame = 0

Query: 5   PYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYG 64
           PY   VG L++  +  RPDI Y V ++SR+   P   H  + + +L+YL  T+   L Y 
Sbjct: 182 PYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYR 241

Query: 65  S-KDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAV 101
           S   + L  Y D+      D   ST G V  L G  V
Sbjct: 242 SGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPV 278

BLAST of Cmc09g0246481 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.9e-06
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 6    YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDY-MLVYG 65
            Y   VGSL Y ++  RPDI Y+V  +S++   P  +H   +K IL+YL  T ++ + +  
Sbjct: 1245 YRGIVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SKDMILIGYTDSDFQTDKDARKSTLGSVFTL 96
               + L  Y+D+D+  DKD   ST G +  L
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYL 1334

BLAST of Cmc09g0246481 vs. ExPASy TrEMBL
Match: A0A5D3BY87 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00800 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.9e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM
Sbjct: 47  MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 106

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV
Sbjct: 107 LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 147

BLAST of Cmc09g0246481 vs. ExPASy TrEMBL
Match: A0A5D3C7T2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00810 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.3e-47
Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNIPYAYAVGSLMYAM C RPDICYSVGIVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 151 MSNIPYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYM 210

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKD+ILIGYTDSDFQTDKDARKST GSVFTLNGGAVV
Sbjct: 211 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVV 251

BLAST of Cmc09g0246481 vs. ExPASy TrEMBL
Match: A0A5A7U2R8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001560 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.2e-46
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNI YAYAVGSLMYAM C RPDICYSVGIVSRYQSNPG DHWT +KNILKYLRRTKDYM
Sbjct: 119 MSNISYAYAVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAIKNILKYLRRTKDYM 178

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKD+ILIGYTDSDFQTDKDARKST GSVFTLNGGAVV
Sbjct: 179 LVYGSKDLILIGYTDSDFQTDKDARKSTSGSVFTLNGGAVV 219

BLAST of Cmc09g0246481 vs. ExPASy TrEMBL
Match: A0A5A7V6Q6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004720 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45
Identity = 93/101 (92.08%), Postives = 94/101 (93.07%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNIPYA AVGSLMYAM C RPDICYSVGIV RYQSNPG DHWTTVKNILKYLRRTKDYM
Sbjct: 19  MSNIPYASAVGSLMYAMLCTRPDICYSVGIVIRYQSNPGRDHWTTVKNILKYLRRTKDYM 78

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKD+ILIGYTDSDFQTDKDARKST  SVFTLNGGAVV
Sbjct: 79  LVYGSKDLILIGYTDSDFQTDKDARKSTSRSVFTLNGGAVV 119

BLAST of Cmc09g0246481 vs. ExPASy TrEMBL
Match: A0A5D3E173 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00320 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.6e-44
Identity = 91/101 (90.10%), Postives = 93/101 (92.08%), Query Frame = 0

Query: 1   MSNIPYAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYM 60
           MSNIPYA+AVGSLMYAM C RPDICY V IVSRYQSNPG DHWT VKNILKYLRRTKDYM
Sbjct: 489 MSNIPYAFAVGSLMYAMLCTRPDICYLVEIVSRYQSNPGRDHWTAVKNILKYLRRTKDYM 548

Query: 61  LVYGSKDMILIGYTDSDFQTDKDARKSTLGSVFTLNGGAVV 102
           LVYGSKD+IL GYTDSDFQTDKDARKST GSVFTLNGGAVV
Sbjct: 549 LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVFTLNGGAVV 589

BLAST of Cmc09g0246481 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 31/86 (36.05%), Postives = 47/86 (54.65%), Query Frame = 0

Query: 6   YAYAVGSLMYAMSCIRPDICYSVGIVSRYQSNPGCDHWTTVKNILKYLRRTKDYMLVYGS 65
           Y   +G LMY +   R DI ++V  +S++   P   H   V  IL Y++ T    L Y S
Sbjct: 378 YRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  K-DMILIGYTDSDFQTDKDARKSTLG 91
           + +M L  ++D+ FQ+ KD R+ST G
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNG 462

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047426.15.9e-51100.00gag/pol protein [Cucumis melo var. makuwa] >TYK04135.1 gag/pol protein [Cucumis ... [more]
TYK06386.11.5e-4694.06gag/pol protein [Cucumis melo var. makuwa][more]
KAA0050132.11.3e-4592.08gag/pol protein [Cucumis melo var. makuwa][more]
KAA0062116.11.4e-4492.08gag/pol protein [Cucumis melo var. makuwa][more]
TYK29682.15.4e-4490.10gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P109788.9e-2656.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P0CV724.0e-1842.57Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Q9ZT944.9e-0836.26Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P256001.2e-0634.02Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Q94HW27.9e-0635.16Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A5D3BY872.9e-51100.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G008... [more]
A0A5D3C7T27.3e-4794.06Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0081... [more]
A0A5A7U2R86.2e-4692.08Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G0015... [more]
A0A5A7V6Q66.8e-4592.08Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00472... [more]
A0A5D3E1732.6e-4490.10Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00320... [more]
Match NameE-valueIdentityDescription
AT4G23160.11.6e-0636.05cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc09g0246481.1Cmc09g0246481.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0008270 zinc ion binding