Cmc09g0246441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0246441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr09: 10367136 .. 10367717 (+)
RNA-Seq Expression	Cmc09g0246441
Synteny	Cmc09g0246441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCTGCTGATTGGGAGCCTGATGTATGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTGGGGATAGTTAGTAGATATCAGTCCAATCCTAGACGTGATCATTGGACAGCTGTTAAAAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATACTTGTGTATCGTTCTAAGGATCTTATTCTTACTGGATACACTGACTCCGATTTCCAAATTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTATATTACCGACTCCACTATGGAAACTGAATATGTAGCTACCTGTGAAGCACTAAAGGAAGCAGTATGGCTTAAAAAGTTCTCAACAGATTTGAAAGTTGTTCCAAATATGCATCTACCAATCACCTTATATTGTGACAATAGTGGTACAGTTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAGCACATTGAACGAAAGTACCATCTGATGAGGAAAATCGTACATCGAGGAGATGTTACAGTAACAAAATTCTCCTCCGAGTAA

mRNA sequence

ATGCTTCTGCTGATTGGGAGCCTGATGTATGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTGGGGATAGTTAGTAGATATCAGTCCAATCCTAGACGTGATCATTGGACAGCTGTTAAAAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATACTTGTGTATCGTTCTAAGGATCTTATTCTTACTGGATACACTGACTCCGATTTCCAAATTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTATATTACCGACTCCACTATGGAAACTGAATATGTAGCTACCTGTGAAGCACTAAAGGAAGCAGTATGGCTTAAAAAGTTCTCAACAGATTTGAAAGTTGTTCCAAATATGCATCTACCAATCACCTTATATTGTGACAATAGTGGTACAGTTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAGCACATTGAACGAAAGTACCATCTGATGAGGAAAATCGTACATCGAGGAGATGTTACAGTAACAAAATTCTCCTCCGAGTAA

Coding sequence (CDS)

ATGCTTCTGCTGATTGGGAGCCTGATGTATGCAATGTTATGTACTAGACCTGACATTTGCTATTCAGTGGGGATAGTTAGTAGATATCAGTCCAATCCTAGACGTGATCATTGGACAGCTGTTAAAAATATTCTAAAATATCTTAGAAGAACAAAAGACTACATACTTGTGTATCGTTCTAAGGATCTTATTCTTACTGGATACACTGACTCCGATTTCCAAATTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTATATTACCGACTCCACTATGGAAACTGAATATGTAGCTACCTGTGAAGCACTAAAGGAAGCAGTATGGCTTAAAAAGTTCTCAACAGATTTGAAAGTTGTTCCAAATATGCATCTACCAATCACCTTATATTGTGACAATAGTGGTACAGTTGCAAATTCACGAGAACCTAGAAGTCATAAACGAGGAAAGCACATTGAACGAAAGTACCATCTGATGAGGAAAATCGTACATCGAGGAGATGTTACAGTAACAAAATTCTCCTCCGAGTAA

Protein sequence

MLLLIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLILTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEAVWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGDVTVTKFSSE

Homology

[Close]

BLAST of Cmc09g0246441 vs. NCBI nr
Match: KAA0047423.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK04132.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.0 bits (972), Expect = 2.4e-101
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 9   MYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLILTGY 68
           MYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLILTGY
Sbjct: 1   MYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLILTGY 60

Query: 69  TDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEAVWLK 128
           TDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEAVWLK
Sbjct: 61  TDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEAVWLK 120

Query: 129 KFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGDVTVT 188
           KFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGDVTVT
Sbjct: 121 KFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGDVTVT 180

Query: 189 KFSSE 194
           KFSSE
Sbjct: 181 KFSSE 185

[Close]

BLAST of Cmc09g0246441 vs. NCBI nr
Match: TYK06386.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 346.7 bits (888), Expect = 1.3e-91
Identity = 170/188 (90.43%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 5   IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
           +GSLMYAMLCTRPDICYSVGIVSRYQSNP RDHWT VKNILKYLRRTKDY+LVY SKDLI
Sbjct: 160 VGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYMLVYGSKDLI 219

Query: 65  LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
           L GYTDSDFQ DKDARKSTSGSVFTLNGGAVVWRSIKQS I DSTME EYVA CEA KEA
Sbjct: 220 LIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYVAACEAAKEA 279

Query: 125 VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
           VWLKKF TDL+ VPNMHLPITLYCDNSG VANSREPRSHKRGKHIERKYHL+RKIVHRGD
Sbjct: 280 VWLKKFLTDLEGVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIRKIVHRGD 339

Query: 185 VTVTKFSS 193
           VTVTK SS
Sbjct: 340 VTVTKISS 347

[Close]

BLAST of Cmc09g0246441 vs. NCBI nr
Match: KAA0050132.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 167/188 (88.83%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 5   IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
           +GSLMYAMLCTRPDICYSVGIVSRYQSNP RDHWTA+KNILKYLRRTKDY+LVY SKDLI
Sbjct: 128 VGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAIKNILKYLRRTKDYMLVYGSKDLI 187

Query: 65  LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
           L GYTDSDFQ DKDARKSTSGSVFTLNGGAVVWRSIKQS I DSTME EYVA CEA K+A
Sbjct: 188 LIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYVAACEAAKKA 247

Query: 125 VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
           VWLKKF TDL+ VPNMHL ITLYCDNSG VANSREPRSHKRGKHIERKYHL+R+IVHRGD
Sbjct: 248 VWLKKFLTDLEGVPNMHLSITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGD 307

Query: 185 VTVTKFSS 193
           VTVTK SS
Sbjct: 308 VTVTKISS 315

[Close]

BLAST of Cmc09g0246441 vs. NCBI nr
Match: KAA0067716.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 167/189 (88.36%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 5   IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
           +GSLMYAMLCTRP+ICYSVGIVSRYQSNP RDHWTAVKNILKYLRRTK+Y+LVY SKDLI
Sbjct: 448 LGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKEYMLVYGSKDLI 507

Query: 65  LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
           LTGY D DFQ DKDARKSTSGSVFTLNGGAVVWRSIKQS ITDSTME EYVA  EA KEA
Sbjct: 508 LTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCITDSTMEDEYVAAYEATKEA 567

Query: 125 VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
           VWLKKF TDL+VVPNMH+PITLYCDNSG VANSREPRSHKRGKHIERKYHL+R+IVHRGD
Sbjct: 568 VWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHKRGKHIERKYHLIREIVHRGD 627

Query: 185 VTVTKFSSE 194
           VTVTK  SE
Sbjct: 628 VTVTKVYSE 636

[Close]

BLAST of Cmc09g0246441 vs. NCBI nr
Match: KAA0032291.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK13513.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 166/189 (87.83%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 5   IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
           +GSLMYAMLCTRPDICYSVGIVSRYQSNP RDHW AVKNILKYLR+TKDY+LVY SKDLI
Sbjct: 275 VGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWIAVKNILKYLRKTKDYMLVYGSKDLI 334

Query: 65  LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
           LTG+TDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQS I  STME EYVA CEA KEA
Sbjct: 335 LTGHTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSCIVGSTMEAEYVAACEAAKEA 394

Query: 125 VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
           VWLKKF TDL+VVPNMHL ITLYCDNSG VANSREPRSHKRGKHIERKYHL+R+I+H+GD
Sbjct: 395 VWLKKFLTDLEVVPNMHLSITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREILHQGD 454

Query: 185 VTVTKFSSE 194
           V VTK SSE
Sbjct: 455 VIVTKISSE 463

[Close]

BLAST of Cmc09g0246441 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.5e-40
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 5    IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
            +GSLMYAM+CTRPDI ++VG+VSR+  NP ++HW AVK IL+YLR T    L +   D I
Sbjct: 1115 VGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI 1174

Query: 65   LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
            L GYTD+D   D D RKS++G +FT +GGA+ W+S  Q  +  ST E EY+A  E  KE 
Sbjct: 1175 LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEM 1234

Query: 125  VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
            +WLK+F  +L +    ++   +YCD+   +  S+    H R KHI+ +YH +R++V    
Sbjct: 1235 IWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDES 1294

Query: 185  VTVTKFSS 193
            + V K S+
Sbjct: 1295 LKVLKIST 1299

[Close]

BLAST of Cmc09g0246441 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-30
Identity = 72/194 (37.11%), Postives = 113/194 (58.25%), Query Frame = 0


Query: 4    LIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSK-- 63
            LIG LMY MLCTRPD+  +V I+SRY S    + W  +K +L+YL+ T D  L+++    
Sbjct: 1184 LIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLA 1243

Query: 64   -DLILTGYTDSDFQIDKDARKSTSGSVFTL-NGGAVVWRSIKQSYITDSTMETEYVATCE 123
             +  + GY DSD+   +  RKST+G +F + +   + W + +Q+ +  S+ E EY+A  E
Sbjct: 1244 FENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFE 1303

Query: 124  ALKEAVWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKI 183
            A++EA+WLK   T + +   +  PI +Y DN G ++ +  P  HKR KHI+ KYH  R+ 
Sbjct: 1304 AVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQ 1363

Query: 184  VHRGDVTVTKFSSE 194
            V    + +    +E
Sbjct: 1364 VQNNVICLEYIPTE 1375

[Close]

BLAST of Cmc09g0246441 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.9e-25
Identity = 59/127 (46.46%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 2   LLLIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVY-RS 61
           L  +G++MY M+ TRPD+  +VG++S++ S+P   HW A+K +L+YL+ T+ Y L + R+
Sbjct: 7   LSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRA 66

Query: 62  KDLILTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEA 121
               L GY+D+D+  D ++R+STSG +F LNGG V WRS KQ  +  S+ E EY+A  EA
Sbjct: 67  GTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEA 126

Query: 122 LKEAVWL 128
            +EAVWL
Sbjct: 127 TQEAVWL 133

[Close]

BLAST of Cmc09g0246441 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-24
Identity = 66/190 (34.74%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 4    LIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDY-ILVYRSKD 63
            ++GSL Y +  TRPD+ Y+V  +S+Y   P  DHW A+K +L+YL  T D+ I + +   
Sbjct: 1231 IVGSLQY-LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNT 1290

Query: 64   LILTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALK 123
            L L  Y+D+D+  D D   ST+G +  L    + W S KQ  +  S+ E EY +      
Sbjct: 1291 LSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSS 1350

Query: 124  EAVWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHR 183
            E  W+    T+L +   +  P  +YCDN G       P  H R KHI   YH +R  V  
Sbjct: 1351 ELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQS 1410

Query: 184  GDVTVTKFSS 193
            G + V   S+
Sbjct: 1411 GALRVVHVST 1417

[Close]

BLAST of Cmc09g0246441 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-22
Identity = 65/190 (34.21%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 4    LIGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDY-ILVYRSKD 63
            ++GSL Y +  TRPDI Y+V  +S++   P  +H  A+K IL+YL  T ++ I + +   
Sbjct: 1248 IVGSLQY-LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNT 1307

Query: 64   LILTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALK 123
            L L  Y+D+D+  DKD   ST+G +  L    + W S KQ  +  S+ E EY +      
Sbjct: 1308 LSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSS 1367

Query: 124  EAVWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHR 183
            E  W+    T+L +   +  P  +YCDN G       P  H R KHI   YH +R  V  
Sbjct: 1368 EMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQS 1427

Query: 184  GDVTVTKFSS 193
            G + V   S+
Sbjct: 1428 GALRVVHVST 1434

[Close]

BLAST of Cmc09g0246441 vs. ExPASy TrEMBL
Match: A0A5D3BZ30 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00750 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.2e-101
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 9   MYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLILTGY 68
           MYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLILTGY
Sbjct: 1   MYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLILTGY 60

Query: 69  TDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEAVWLK 128
           TDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEAVWLK
Sbjct: 61  TDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEAVWLK 120

Query: 129 KFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGDVTVT 188
           KFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGDVTVT
Sbjct: 121 KFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGDVTVT 180

Query: 189 KFSSE 194
           KFSSE
Sbjct: 181 KFSSE 185

[Close]

BLAST of Cmc09g0246441 vs. ExPASy TrEMBL
Match: A0A5D3C7T2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00810 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.4e-92
Identity = 170/188 (90.43%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 5   IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
           +GSLMYAMLCTRPDICYSVGIVSRYQSNP RDHWT VKNILKYLRRTKDY+LVY SKDLI
Sbjct: 160 VGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTDVKNILKYLRRTKDYMLVYGSKDLI 219

Query: 65  LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
           L GYTDSDFQ DKDARKSTSGSVFTLNGGAVVWRSIKQS I DSTME EYVA CEA KEA
Sbjct: 220 LIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYVAACEAAKEA 279

Query: 125 VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
           VWLKKF TDL+ VPNMHLPITLYCDNSG VANSREPRSHKRGKHIERKYHL+RKIVHRGD
Sbjct: 280 VWLKKFLTDLEGVPNMHLPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIRKIVHRGD 339

Query: 185 VTVTKFSS 193
           VTVTK SS
Sbjct: 340 VTVTKISS 347

[Close]

BLAST of Cmc09g0246441 vs. ExPASy TrEMBL
Match: A0A5A7U2R8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001560 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 167/188 (88.83%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 5   IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
           +GSLMYAMLCTRPDICYSVGIVSRYQSNP RDHWTA+KNILKYLRRTKDY+LVY SKDLI
Sbjct: 128 VGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAIKNILKYLRRTKDYMLVYGSKDLI 187

Query: 65  LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
           L GYTDSDFQ DKDARKSTSGSVFTLNGGAVVWRSIKQS I DSTME EYVA CEA K+A
Sbjct: 188 LIGYTDSDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCIADSTMEVEYVAACEAAKKA 247

Query: 125 VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
           VWLKKF TDL+ VPNMHL ITLYCDNSG VANSREPRSHKRGKHIERKYHL+R+IVHRGD
Sbjct: 248 VWLKKFLTDLEGVPNMHLSITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGD 307

Query: 185 VTVTKFSS 193
           VTVTK SS
Sbjct: 308 VTVTKISS 315

[Close]

BLAST of Cmc09g0246441 vs. ExPASy TrEMBL
Match: A0A5A7SRW5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G00090 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.0e-90
Identity = 166/189 (87.83%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 5   IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
           +GSLMYAMLCTRPDICYSVGIVSRYQSNP RDHW AVKNILKYLR+TKDY+LVY SKDLI
Sbjct: 275 VGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWIAVKNILKYLRKTKDYMLVYGSKDLI 334

Query: 65  LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
           LTG+TDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQS I  STME EYVA CEA KEA
Sbjct: 335 LTGHTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSCIVGSTMEAEYVAACEAAKEA 394

Query: 125 VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
           VWLKKF TDL+VVPNMHL ITLYCDNSG VANSREPRSHKRGKHIERKYHL+R+I+H+GD
Sbjct: 395 VWLKKFLTDLEVVPNMHLSITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREILHQGD 454

Query: 185 VTVTKFSSE 194
           V VTK SSE
Sbjct: 455 VIVTKISSE 463

[Close]

BLAST of Cmc09g0246441 vs. ExPASy TrEMBL
Match: A0A5A7VMF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00220 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.0e-90
Identity = 167/189 (88.36%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 5   IGSLMYAMLCTRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVYRSKDLI 64
           +GSLMYAMLCTRP+ICYSVGIVSRYQSNP RDHWTAVKNILKYLRRTK+Y+LVY SKDLI
Sbjct: 448 LGSLMYAMLCTRPEICYSVGIVSRYQSNPGRDHWTAVKNILKYLRRTKEYMLVYGSKDLI 507

Query: 65  LTGYTDSDFQIDKDARKSTSGSVFTLNGGAVVWRSIKQSYITDSTMETEYVATCEALKEA 124
           LTGY D DFQ DKDARKSTSGSVFTLNGGAVVWRSIKQS ITDSTME EYVA  EA KEA
Sbjct: 508 LTGYIDYDFQTDKDARKSTSGSVFTLNGGAVVWRSIKQSCITDSTMEDEYVAAYEATKEA 567

Query: 125 VWLKKFSTDLKVVPNMHLPITLYCDNSGTVANSREPRSHKRGKHIERKYHLMRKIVHRGD 184
           VWLKKF TDL+VVPNMH+PITLYCDNSG VANSREPRSHKRGKHIERKYHL+R+IVHRGD
Sbjct: 568 VWLKKFLTDLEVVPNMHMPITLYCDNSGVVANSREPRSHKRGKHIERKYHLIREIVHRGD 627

Query: 185 VTVTKFSSE 194
           VTVTK  SE
Sbjct: 628 VTVTKVYSE 636

[Close]

BLAST of Cmc09g0246441 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04
Identity = 25/72 (34.72%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 15 TRPDICYSVGIVSRYQSNPRRDHWTAVKNILKYLRRTKDYILVY-RSKDLILTGYTDSDF 74
          TRPD+ ++V  +S++ S  R     AV  +L Y++ T    L Y  + DL L  + DSD+
Sbjct: 6  TRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDW 65

Query: 75 QIDKDARKSTSG 86
              D R+S +G
Sbjct: 66 ASCPDTRRSVTG 77

The following BLAST results are available for this feature:

BLAST of Cmc09g0246441 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047423.1	2.4e-101	100.00	gag/pol protein [Cucumis melo var. makuwa] >TYK04132.1 gag/pol protein [Cucumis ...	[more]
TYK06386.1	1.3e-91	90.43	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0050132.1	2.5e-90	88.83	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0067716.1	1.2e-89	88.36	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032291.1	1.2e-89	87.83	gag/pol protein [Cucumis melo var. makuwa] >TYK13513.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc09g0246441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.5e-40	44.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.3e-30	37.11	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	2.9e-25	46.46	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	4.2e-24	34.74	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.9e-22	34.21	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc09g0246441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZ30	1.2e-101	100.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G007...	[more]
A0A5D3C7T2	6.4e-92	90.43	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0081...	[more]
A0A5A7U2R8	1.2e-90	88.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G0015...	[more]
A0A5A7SRW5	6.0e-90	87.83	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G0009...	[more]
A0A5A7VMF5	6.0e-90	88.36	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G0022...	[more]

BLAST of Cmc09g0246441 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00240.1	2.2e-04	34.72	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 10..87
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 10..87
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 66..193 e-value: 3.44651E-49 score: 154.548

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0246441.1	Cmc09g0246441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016020	membrane
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding