Cmc09g0245661 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0245661
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	defective in exine formation protein (DEX1)
Location	CMiso1.1chr09: 9195371 .. 9197607 (+)
RNA-Seq Expression	Cmc09g0245661
Synteny	Cmc09g0245661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGTTATTATCTCTCTAATTTTTACAGTTTGGCTTCAACGTTCTTCCCTGTATCTACACCAGCATTTCTCGTTAAGTAGTAAAAGGTTGTTTGTTCTGTATCATTATGCATGTTTTATTGTTTTTTGTTTCCATTGTTCATTTGATTAATTTCTTATCTTTTATTCTAAAATGTTTGTCTGTAGAAATTTCTTGTGGCTCTTATTAGAAAACAGTGTTCATTGCAGAATGGAGTGTAGCTTCTAAATTTATGTGTTTTGATGTTGTCCGGGTTAGTTAAATCCCTAGGATCTAGGTTTAGATAAATAGCTATGCTATGGTACTGGAATGGTTGTTGGTTGGATTTTGTTGATTTGTACAACTTAAAGCATTTCGTTGGGAGTTCAATAAATTGGTCTATATTTTGAAGGCCTATGTGAACTCGCAACCTAATTTTGAGAAATAAAATGCATCACTATATCACATTAGGGAAGATTTCAACATCTGACGGTCCAAAAAGTGCTTATACCATTATTCGTGGCAGGTGGGTTGGTAAGTCACCATTTGTGTAGAACTTTGAAGCTTCCTCCTTCATCTGTATTTTATTTTTTTAGTACAACAACATTTGGGATGTGAAATTAGTCTTGGTGTTGATATATGATCAATGTTGGATTTGTTGTGACATGGCTTCATCTGAACCGACGATAAAATGTAAATAATCATTCATCTACGAAATAAAGAAATTAAAATTAGTGTAACTTCTAAGTCGACAAATTAATATTTCTAGATAACTTGTGGTTGTTTTTTCGTTTTCTTTTTTTGAATGCCAATTTATCTGGTTGATGATATGTTCATGTAGATTGTACCAAGGTGGTACGCATTATTATATTTGTAAACTTTGAAGTGTATTTTTATAGCTGAAGTTATGAAGTCCTTAAATATCCCCCAAAGAAATAGTACGTGTGTTGTTCAGAACACTAAATACTGACAGGTAAAATCATTGATGTTTATATATGTCTTCATATTTAGACCGTCTCAAATCCAACATGTTCAAAATCCATTAGTTTTTTAATACTCTAACAAAATTAATGTTTTTTTTTTTTTGTTCAATTTGTGGGAAGCCATACATGTATACAGTATAAAACGGTTATGTTTATCTGTAAGGCAACATAAAAAATTTTGTTTATACTTCCTTTCTAAAGGCCTCATTGCTTCTTGTTATGCTTACCTTTACAAAATTATTGACCACTGTTCAATTGTCTTGTTCATTGAAGATAATAGGACAGGACAAGTATCGTTGAGGATCCCACGTCAATGATGTGGAGATCTAATAATATTAAGATAGATGAGGTTACTCCTCCGATTGTCAATTGTTCGTAAAATGGAATCTCAAGTTAATCAAATTAAGTATTAGTTTCTATAACCAACGTGAAATTAATTGCCATTTCAGGAAGCTCATGTATTAAAAGAAATATGACAAGCTATACCGAATTCATGAAGGATGGTGATGAGAATCTGGATATTCTTGTTGGCACATCCTTTGACTTGTTCTATGTCTTGGACCATCTTGGTAATCGATTCTGAATACTTATTTTATTGTTCTATTTATGTTACTCTTAATATGCTCCTAATGCATATAATCAATGTTTCTTTTGATTCCCTTTTATTTTTCCTGTTTTAGGATTTTATACACTTTGTCAACTCGAAAAGATTTAAATGAATATTATCTTATCTTCAAAATAATGTACAGGCCTAACCTAAAGTAGCTTGTGGTTGTTTCTTCTCGTCTTTAAATTATCTTTATGATGCTTAGCACTTTATTACCCTCTCCAGGCTTTTACTGTACACGATTCTTCTTCCTCCTTGTATTCCTTTATGATTTGGGGGTGTGAAAAAGGAAACATTTAAAGATGTTTTCAATGGGTAATATTGTCGCTTCCCTTTCTTCTGTTATTACAAAGTTGTTTTTATAGCCTTCCTAAAACGCTATCAAAATGTTATCTACTTCTTGTAGATTGGCTCTGTTGTTAGTGGTATTTATTTTAGCGCATGTATTGGAGATAGAGGATGCAAAATGCAAGTTTATTTGAAGCCAAGTTTCATCCAACGTCATTGAGTTTCAAGCTTCTTTAGTTAAGTTTGTGTCTCTTGAACTAGAATTGTAGTCTTATGATTTTTGAAATAGCATAGTTGGATTGGTTTTGTAATTTTAGAATTATCATATTAGGTTGGGTTGATAGAAGTAATGTTTTGTATAT

mRNA sequence

CCTGTTATTATCTCTCTAATTTTTACAGTTTGGCTTCAACGTTCTTCCCTGTATCTACACCAGCATTTCTCGTTAAGTAGTAAAAGGAAGCTCATGTATTAAAAGAAATATGACAAGCTATACCGAATTCATGAAGGATGGTGATGAGAATCTGGATATTCTTGTTGGCACATCCTTTGACTTGTTCTATGTCTTGGACCATCTTGGCTTTTACTGTACACGATTCTTCTTCCTCCTTGTATTCCTTTATGATTTGGGGGTGTGAAAAAGGAAACATTTAAAGATGTTTTCAATGGATTGGCTCTGTTGTTAGTGGTATTTATTTTAGCGCATGTATTGGAGATAGAGGATGCAAAATGCAAGTTTATTTGAAGCCAAGTTTCATCCAACGTCATTGAGTTTCAAGCTTCTTTAGTTAAGTTTGTGTCTCTTGAACTAGAATTGTAGTCTTATGATTTTTGAAATAGCATAGTTGGATTGGTTTTGTAATTTTAGAATTATCATATTAGGTTGGGTTGATAGAAGTAATGTTTTGTATAT

Coding sequence (CDS)

ATGACAAGCTATACCGAATTCATGAAGGATGGTGATGAGAATCTGGATATTCTTGTTGGCACATCCTTTGACTTGTTCTATGTCTTGGACCATCTTGGCTTTTACTGTACACGATTCTTCTTCCTCCTTGTATTCCTTTATGATTTGGGGGTGTGA

Protein sequence

MTSYTEFMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDLGV

Homology

[Close]

BLAST of Cmc09g0245661 vs. NCBI nr
Match: XP_008448328.1 (PREDICTED: uncharacterized protein LOC103490556 isoform X3 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7   FMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDL 50
           FMKDGD NLDILVGTS  LFYVLDHLGFYCT FFFLLVFLY L
Sbjct: 124 FMKDGDGNLDILVGTSLGLFYVLDHLGFYCTLFFFLLVFLYVL 166

[Close]

BLAST of Cmc09g0245661 vs. NCBI nr
Match: XP_008448326.1 (PREDICTED: uncharacterized protein LOC103490556 isoform X2 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7   FMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDL 50
           FMKDGD NLDILVGTS  LFYVLDHLGFYCT FFFLLVFLY L
Sbjct: 124 FMKDGDGNLDILVGTSLGLFYVLDHLGFYCTLFFFLLVFLYVL 166

[Close]

BLAST of Cmc09g0245661 vs. NCBI nr
Match: XP_016900516.1 (PREDICTED: uncharacterized protein LOC103490556 isoform X4 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7   FMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDL 50
           FMKDGD NLDILVGTS  LFYVLDHLGFYCT FFFLLVFLY L
Sbjct: 124 FMKDGDGNLDILVGTSLGLFYVLDHLGFYCTLFFFLLVFLYVL 166

[Close]

BLAST of Cmc09g0245661 vs. NCBI nr
Match: XP_008448325.1 (PREDICTED: uncharacterized protein LOC103490556 isoform X1 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 3.3e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7   FMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDL 50
           FMKDGD NLDILVGTS  LFYVLDHLGFYCT FFFLLVFLY L
Sbjct: 124 FMKDGDGNLDILVGTSLGLFYVLDHLGFYCTLFFFLLVFLYVL 166

[Close]

BLAST of Cmc09g0245661 vs. ExPASy TrEMBL
Match: A0A1S3BJG1 (uncharacterized protein LOC103490556 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490556 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7   FMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDL 50
           FMKDGD NLDILVGTS  LFYVLDHLGFYCT FFFLLVFLY L
Sbjct: 124 FMKDGDGNLDILVGTSLGLFYVLDHLGFYCTLFFFLLVFLYVL 166

[Close]

BLAST of Cmc09g0245661 vs. ExPASy TrEMBL
Match: A0A1S3BIV1 (uncharacterized protein LOC103490556 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490556 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7   FMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDL 50
           FMKDGD NLDILVGTS  LFYVLDHLGFYCT FFFLLVFLY L
Sbjct: 124 FMKDGDGNLDILVGTSLGLFYVLDHLGFYCTLFFFLLVFLYVL 166

[Close]

BLAST of Cmc09g0245661 vs. ExPASy TrEMBL
Match: A0A1S3BKB3 (uncharacterized protein LOC103490556 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490556 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7   FMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDL 50
           FMKDGD NLDILVGTS  LFYVLDHLGFYCT FFFLLVFLY L
Sbjct: 124 FMKDGDGNLDILVGTSLGLFYVLDHLGFYCTLFFFLLVFLYVL 166

[Close]

BLAST of Cmc09g0245661 vs. ExPASy TrEMBL
Match: A0A1S4DX12 (uncharacterized protein LOC103490556 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103490556 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7   FMKDGDENLDILVGTSFDLFYVLDHLGFYCTRFFFLLVFLYDL 50
           FMKDGD NLDILVGTS  LFYVLDHLGFYCT FFFLLVFLY L
Sbjct: 124 FMKDGDGNLDILVGTSLGLFYVLDHLGFYCTLFFFLLVFLYVL 166

[Close]

BLAST of Cmc09g0245661 vs. TAIR 10
Match: AT3G09090.1 (defective in exine formation protein (DEX1) )

HSP 1 Score: 39.7 bits (91), Expect = 8.5e-04
Identity = 18/24 (75.00%), Postives = 19/24 (79.17%), Query Frame = 0


Query: 10  DGDENLDILVGTSFDLFYVLDHLG 34
           DGD  LDILVGTSF LFY +DH G
Sbjct: 513 DGDGYLDILVGTSFGLFYAMDHRG 536

[Close]

BLAST of Cmc09g0245661 vs. TAIR 10
Match: AT3G09090.2 (defective in exine formation protein (DEX1) )

HSP 1 Score: 39.7 bits (91), Expect = 8.5e-04
Identity = 18/24 (75.00%), Postives = 19/24 (79.17%), Query Frame = 0


Query: 10  DGDENLDILVGTSFDLFYVLDHLG 34
           DGD  LDILVGTSF LFY +DH G
Sbjct: 513 DGDGYLDILVGTSFGLFYAMDHRG 536

[Close]

BLAST of Cmc09g0245661 vs. TAIR 10
Match: AT3G09090.3 (defective in exine formation protein (DEX1) )

HSP 1 Score: 39.7 bits (91), Expect = 8.5e-04
Identity = 18/24 (75.00%), Postives = 19/24 (79.17%), Query Frame = 0


Query: 10  DGDENLDILVGTSFDLFYVLDHLG 34
           DGD  LDILVGTSF LFY +DH G
Sbjct: 513 DGDGYLDILVGTSFGLFYAMDHRG 536

The following BLAST results are available for this feature:

BLAST of Cmc09g0245661 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448328.1	3.3e-10	88.37	PREDICTED: uncharacterized protein LOC103490556 isoform X3 [Cucumis melo]	[more]
XP_008448326.1	3.3e-10	88.37	PREDICTED: uncharacterized protein LOC103490556 isoform X2 [Cucumis melo]	[more]
XP_016900516.1	3.3e-10	88.37	PREDICTED: uncharacterized protein LOC103490556 isoform X4 [Cucumis melo]	[more]
XP_008448325.1	3.3e-10	88.37	PREDICTED: uncharacterized protein LOC103490556 isoform X1 [Cucumis melo]	[more]

BLAST of Cmc09g0245661 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc09g0245661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BJG1	1.6e-10	88.37	uncharacterized protein LOC103490556 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIV1	1.6e-10	88.37	uncharacterized protein LOC103490556 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BKB3	1.6e-10	88.37	uncharacterized protein LOC103490556 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DX12	1.6e-10	88.37	uncharacterized protein LOC103490556 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cmc09g0245661 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09090.1	8.5e-04	75.00	defective in exine formation protein (DEX1)	[more]
AT3G09090.2	8.5e-04	75.00	defective in exine formation protein (DEX1)	[more]
AT3G09090.3	8.5e-04	75.00	defective in exine formation protein (DEX1)	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0245661.1	Cmc09g0245661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane