Cmc09g0244641 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0244641
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr09: 7697006 .. 7697575 (-)
RNA-Seq Expression	Cmc09g0244641
Synteny	Cmc09g0244641

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTAATGAACTGCACTAGACCAGATATTGCATATGCTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTGTGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTCATAGCACTAAAGTTGGCAGGACAGGAGGCTGAGTGGATCAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCCGCGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTTTGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAA

mRNA sequence

ATGTATTTAATGAACTGCACTAGACCAGATATTGCATATGCTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTGTGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTCATAGCACTAAAGTTGGCAGGACAGGAGGCTGAGTGGATCAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCCGCGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTTTGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAA

Coding sequence (CDS)

ATGTATTTAATGAACTGCACTAGACCAGATATTGCATATGCTGTCAGTAGATTGAGTAGATATACACACAATCCTAATAGATACCACTGGGATGCCTTGTGCCATCTGTTGAGATATCTTAAAGGAACGATAGATTACTGTCTACACTTCAACAAATTTCCTGCCGTACTAGAAGGATATTGTGATGCAAACTGGGTCACAGACAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTACTCGGAGGTGGAGCTATATCTTGGAAGTCTACAAAACAGACTTGTATAGCCAGATCCACGATGGAATCCGAGTTCATAGCACTAAAGTTGGCAGGACAGGAGGCTGAGTGGATCAAAAATCTACTAGGAGATGTACCATTGTGGGGGACATCTGTACCGGTGTCCATACAGTGTGATTCGCAAGCCGCGATATGTACTGCCAAGAACAGTGTTTATAATGGTAAAAGTAGACACATACGTCTTAGGCATGCAGTAGTAAAACAACTTTGGAAGGAACCATCTCCTTGGAATTTGTTCGATCTGAGAAGAACTTGGCTGATCCTTTAA

Protein sequence

MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKEPSPWNLFDLRRTWLIL

Homology

[Close]

BLAST of Cmc09g0244641 vs. NCBI nr
Match: TYK07981.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 355.5 bits (911), Expect = 2.8e-94
Identity = 169/173 (97.69%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHFNKFPAVLEGY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQL KE
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKE 1125

[Close]

BLAST of Cmc09g0244641 vs. NCBI nr
Match: TYK23469.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93
Identity = 168/173 (97.11%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHF KFPAVLEGY
Sbjct: 849  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 908

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 909  CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 968

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQL KE
Sbjct: 969  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKE 1021

[Close]

BLAST of Cmc09g0244641 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 1.8e-93
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHF KFPAVLEGY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQL KE
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKE 1125

[Close]

BLAST of Cmc09g0244641 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 1.8e-93
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHF KFPAVLEGY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQL KE
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKE 1125

[Close]

BLAST of Cmc09g0244641 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 1.8e-93
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHF KFPAVLEGY
Sbjct: 1132 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1191

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 1192 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1251

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQL KE
Sbjct: 1252 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKE 1304

[Close]

BLAST of Cmc09g0244641 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.5e-37
Identity = 76/175 (43.43%), Postives = 112/175 (64.00%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MY M CTRPDIA+AV  +SR+  NP + HW+A+  +LRYL+GT   CL F     +L+GY
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGY 1178

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
             DA+   D D   S++GY+F   GGAISW+S  Q C+A ST E+E+IA    G+E  W+K
Sbjct: 1179 TDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLK 1238

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKEPS 176
              L ++ L      V   CDSQ+AI  +KNS+Y+ +++HI +R+  ++++  + S
Sbjct: 1239 RFLQELGLHQKEYVV--YCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDES 1291

[Close]

BLAST of Cmc09g0244641 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.0e-28
Identity = 64/163 (39.26%), Postives = 97/163 (59.51%), Query Frame = 0


Query: 7    TRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEGYCDANW 66
            TRPD++YAV+RLS+Y H P   HW+AL  +LRYL GT D+ +   K   + L  Y DA+W
Sbjct: 1241 TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADW 1300

Query: 67   VTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIKNLLGD 126
              D D+  ST+GY+  LG   ISW S KQ  + RS+ E+E+ ++     E +WI +LL +
Sbjct: 1301 AGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTE 1360

Query: 127  VPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVK 169
            + +  +  PV I CD+  A     N V++ + +HI L +  ++
Sbjct: 1361 LGIQLSHPPV-IYCDNVGATYLCANPVFHSRMKHIALDYHFIR 1402

[Close]

BLAST of Cmc09g0244641 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.7e-26
Identity = 62/163 (38.04%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 7    TRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEGYCDANW 66
            TRPDI+YAV+RLS++ H P   H  AL  +LRYL GT ++ +   K   + L  Y DA+W
Sbjct: 1258 TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADW 1317

Query: 67   VTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIKNLLGD 126
              D D+  ST+GY+  LG   ISW S KQ  + RS+ E+E+ ++     E +WI +LL +
Sbjct: 1318 AGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTE 1377

Query: 127  VPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVK 169
            + +  T  PV I CD+  A     N V++ + +HI + +  ++
Sbjct: 1378 LGIRLTRPPV-IYCDNVGATYLCANPVFHSRMKHIAIDYHFIR 1419

[Close]

BLAST of Cmc09g0244641 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-24
Identity = 59/120 (49.17%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKF-PAVLEG 60
           MYLM  TRPD+A AV  LS++  +P   HW AL  +LRYL+ T  Y L F +   A L G
Sbjct: 14  MYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVG 73

Query: 61  YCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWI 120
           Y DA+W  D +   STSGY+F L GG +SW+S KQ  +A S+ E E++AL  A QEA W+
Sbjct: 74  YSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc09g0244641 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 112.8 bits (281), Expect = 4.1e-24
Identity = 64/173 (36.99%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNK---FPAVL 60
            MY+M CTRPD+  AV+ LSRY+   N   W  L  +LRYLKGTID  L F K   F   +
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248

Query: 61   EGYCDANWVTDNDEVNSTSGYVF-LLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEA 120
             GY D++W     +  ST+GY+F +     I W + +Q  +A S+ E+E++AL  A +EA
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308

Query: 121  EWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQ 170
             W+K LL  + +     P+ I  D+Q  I  A N   + +++HI +++   ++
Sbjct: 1309 LWLKFLLTSINI-KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE 1360

[Close]

BLAST of Cmc09g0244641 vs. ExPASy TrEMBL
Match: A0A5D3C7Z8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001160 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 169/173 (97.69%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHFNKFPAVLEGY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQL KE
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKE 1125

[Close]

BLAST of Cmc09g0244641 vs. ExPASy TrEMBL
Match: A0A5D3DJQ1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00320 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.7e-94
Identity = 168/173 (97.11%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHF KFPAVLEGY
Sbjct: 849  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 908

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 909  CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 968

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQL KE
Sbjct: 969  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLLKE 1021

[Close]

BLAST of Cmc09g0244641 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.7e-94
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHF KFPAVLEGY
Sbjct: 1132 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1191

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 1192 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1251

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQL KE
Sbjct: 1252 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKE 1304

[Close]

BLAST of Cmc09g0244641 vs. ExPASy TrEMBL
Match: A0A5A7SP23 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001760 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.7e-94
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHF KFPAVLEGY
Sbjct: 1090 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1149

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 1150 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1209

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQL KE
Sbjct: 1210 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKE 1262

[Close]

BLAST of Cmc09g0244641 vs. ExPASy TrEMBL
Match: A0A5A7UNH1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold104G00100 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.7e-94
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1    MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAVLEGY 60
            MYLMN TRPDIAYAVSRLSRYTHNPNRYHWDAL HLLRYLKGTIDYCLHF KFPAVLEGY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIAL+LAGQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRLRHAVVKQLWKE 174
            NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRH+RLRHAVVKQL KE
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLKE 1125

[Close]

BLAST of Cmc09g0244641 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 105.1 bits (261), Expect = 6.1e-23
Identity = 58/161 (36.02%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 1   MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEG 60
           MYL   TR DI++AV++LS+++  P   H  A+  +L Y+KGT+   L ++    + L+ 
Sbjct: 386 MYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 445

Query: 61  YCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEWI 120
           + DA++ +  D   ST+GY   LG   ISWKS KQ  +++S+ E+E+ AL  A  E  W+
Sbjct: 446 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 505

Query: 121 KNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHI 161
                ++ L   S P  + CD+ AAI  A N+V++ +++HI
Sbjct: 506 AQFFRELQL-PLSKPTLLFCDNTAAIHIATNAVFHERTKHI 544

[Close]

BLAST of Cmc09g0244641 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-17
Identity = 42/116 (36.21%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 4   MNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEGYCD 63
           +  TRPDI+YAV+ + +  H P    +D L  +LRY+KGTI + L+ +K   + ++ +CD
Sbjct: 110 LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCD 169

Query: 64  ANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALKLAGQEAEW 119
           ++W        ST+G+   LG   ISW + +Q  ++RS+ E+E+ AL L   E  W
Sbjct: 170 SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc09g0244641 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-06
Identity = 26/83 (31.33%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 1  MYLMNCTRPDIAYAVSRLSRYTHNPNRYHWDALCHLLRYLKGTIDYCLHFNKFPAV-LEG 60
          MYL   TRPD+ +AV+RLS+++         A+  +L Y+KGT+   L ++    + L+ 
Sbjct: 1  MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 61 YCDANWVTDNDEVNSTSGYVFLL 83
          + D++W +  D   S +G+  L+
Sbjct: 61 FADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc09g0244641 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07981.1	2.8e-94	97.69	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23469.1	1.4e-93	97.11	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	1.8e-93	96.53	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	1.8e-93	96.53	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06518.1	1.8e-93	96.53	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0244641 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.5e-37	43.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	8.0e-28	39.26	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	5.7e-26	38.04	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	1.4e-24	49.17	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	4.1e-24	36.99	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc09g0244641 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7Z8	1.3e-94	97.69	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DJQ1	6.7e-94	97.11	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C5T2	8.7e-94	96.53	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SP23	8.7e-94	96.53	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UNH1	8.7e-94	96.53	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc09g0244641 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.1e-23	36.02	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.9e-17	36.21	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	5.2e-06	31.33	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 58..167
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 58..167
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 58..170 e-value: 2.62695E-49 score: 154.548
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0244641.1	Cmc09g0244641.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding