Cmc09g0244301 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0244301
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr09: 7171690 .. 7172154 (+)
RNA-Seq Expression	Cmc09g0244301
Synteny	Cmc09g0244301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACAAAGTCTCTTGATGAGAGCTTTTATTTCTTGATTTTTATAGATGATTATAGCCGTATGAGTTGGATATATTTTCTAGAAAGCAAATCAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAAAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTACGAGGAATATGGCATCCATAGGGAGTTAACAACACTTTACACTTCGGAGCAAAATGGGGTAGCCGAGAAGAAGAATCGAACTGTGGTGGAGATGGCAAGAAGCATATTGCAAATGAAAGGCCTTTCAAATGATTTTTGGATTGAAGCAGTCTCGACTTCCATCTACCTACTGAACATCTCACCAACAAAGGCTGTCATGAATAAAACTCCATTTGAAGCTTGGTATGGCAAAAAAACCCCAATGTAA

mRNA sequence

ATGCAAACAAAGTCTCTTGATGAGAGCTTTTATTTCTTGATTTTTATAGATGATTATAGCCGTATGAGTTGGATATATTTTCTAGAAAGCAAATCAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAAAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTACGAGGAATATGGCATCCATAGGGAGTTAACAACACTTTACACTTCGGAGCAAAATGGGGTAGCCGAGAAGAAGAATCGAACTGTGGTGGAGATGGCAAGAAGCATATTGCAAATGAAAGGCCTTTCAAATGATTTTTGGATTGAAGCAGTCTCGACTTCCATCTACCTACTGAACATCTCACCAACAAAGGCTGTCATGAATAAAACTCCATTTGAAGCTTGGTATGGCAAAAAAACCCCAATGTAA

Coding sequence (CDS)

ATGCAAACAAAGTCTCTTGATGAGAGCTTTTATTTCTTGATTTTTATAGATGATTATAGCCGTATGAGTTGGATATATTTTCTAGAAAGCAAATCAGAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAGAAAAGCAAAGTGGCATGTTCATCAAATCTCTTCGCAGTGATAAAGGTGGAGAATTTTTGTCCAACAACTTCAACCATTTTTACGAGGAATATGGCATCCATAGGGAGTTAACAACACTTTACACTTCGGAGCAAAATGGGGTAGCCGAGAAGAAGAATCGAACTGTGGTGGAGATGGCAAGAAGCATATTGCAAATGAAAGGCCTTTCAAATGATTTTTGGATTGAAGCAGTCTCGACTTCCATCTACCTACTGAACATCTCACCAACAAAGGCTGTCATGAATAAAACTCCATTTGAAGCTTGGTATGGCAAAAAAACCCCAATGTAA

Protein sequence

MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDKGGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWIEAVSTSIYLLNISPTKAVMNKTPFEAWYGKKTPM

Homology

[Close]

BLAST of Cmc09g0244301 vs. NCBI nr
Match: KAA0040613.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK05657.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK
Sbjct: 242 MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 301

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI
Sbjct: 302 GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 361

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKKTPM 155
           EAVSTSIYLLNISPTKAVMNKTPFEAWYGKKTP+
Sbjct: 362 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKKTPI 395

[Close]

BLAST of Cmc09g0244301 vs. NCBI nr
Match: TYK28117.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 9.9e-66
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQTKSL  SFYFLIFIDDYSRMSWIYFL+S+SETFEKFKHFKAKVEKQSGMFIKS RSD+
Sbjct: 436 MQTKSLGGSFYFLIFIDDYSRMSWIYFLKSQSETFEKFKHFKAKVEKQSGMFIKSFRSDR 495

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GG+FLSNNFNHF EE+GIHRELTT YTSEQNGVAE+KNRTVVEMARS+LQMKGLSNDFW 
Sbjct: 496 GGDFLSNNFNHFCEEHGIHRELTTPYTSEQNGVAERKNRTVVEMARSMLQMKGLSNDFWP 555

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEA 147
           EA STSIYLLNISPTK VMNKTPFEA
Sbjct: 556 EAASTSIYLLNISPTKVVMNKTPFEA 581

[Close]

BLAST of Cmc09g0244301 vs. NCBI nr
Match: TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 4.2e-64
Identity = 129/145 (88.97%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQTKS   SFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSD+
Sbjct: 614 MQTKSFGRSFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDR 673

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           G EFLSNNFNHF +E+GIHRELTT YT EQNGVAE+KN+TVVEMARS+LQMKGL NDFW 
Sbjct: 674 GREFLSNNFNHFCKEHGIHRELTTPYTPEQNGVAERKNQTVVEMARSMLQMKGLLNDFWA 733

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFE 146
           EAVS SIYLLNISPTKAVMNKTPFE
Sbjct: 734 EAVSISIYLLNISPTKAVMNKTPFE 758

[Close]

BLAST of Cmc09g0244301 vs. NCBI nr
Match: CAN60366.1 (hypothetical protein VITISV_031870 [Vitis vinifera])

HSP 1 Score: 218.0 bits (554), Expect = 5.6e-53
Identity = 107/151 (70.86%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQT S   S YFL+F DD+SRMSW+YFL+SK+ETFE FK FKA VEKQSG  IK LR+D+
Sbjct: 509 MQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDR 568

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GGEFLSN+F  F EE G+HRELTT Y+ EQNGVAE+KNRTVVEMARS+++ K LSN FW 
Sbjct: 569 GGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFWA 628

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKK 152
           E V+T++YLLNISPTKAV+N+TP+EAWYG+K
Sbjct: 629 EGVATAVYLLNISPTKAVLNRTPYEAWYGRK 659

[Close]

BLAST of Cmc09g0244301 vs. NCBI nr
Match: RVW26239.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 218.0 bits (554), Expect = 5.6e-53
Identity = 107/151 (70.86%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQT S   S YFL+F DD+SRMSW+YFL+SK+ETFE FK FKA VEKQSG  IK LR+D+
Sbjct: 194 MQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDR 253

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GGEFLSN+F  F EE G+HRELTT Y+ EQNGVAE+KNRTVVEMARS+++ K LSN FW 
Sbjct: 254 GGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFWA 313

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKK 152
           E V+T++YLLNISPTKAV+N+TP+EAWYG+K
Sbjct: 314 EGVATAVYLLNISPTKAVLNRTPYEAWYGRK 344

[Close]

BLAST of Cmc09g0244301 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-29
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           M+ +S+  + YF+ FIDD SR  W+Y L++K + F+ F+ F A VE+++G  +K LRSD 
Sbjct: 492 MEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDN 551

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GGE+ S  F  +   +GI  E T   T + NGVAE+ NRT+VE  RS+L+M  L   FW 
Sbjct: 552 GGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWG 611

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKK 152
           EAV T+ YL+N SP+  +  + P   W  K+
Sbjct: 612 EAVQTACYLINRSPSVPLAFEIPERVWTNKE 642

[Close]

BLAST of Cmc09g0244301 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-21
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 5   SLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDKGGEF 64
           +LD+  YF+IF+D ++     Y ++ KS+ F  F+ F AK E    + +  L  D G E+
Sbjct: 496 TLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREY 555

Query: 65  LSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWIEAVS 124
           LSN    F  + GI   LT  +T + NGV+E+  RT+ E AR+++    L   FW EAV 
Sbjct: 556 LSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVL 615

Query: 125 TSIYLLNISPTKAVM--NKTPFEAWYGKK 152
           T+ YL+N  P++A++  +KTP+E W+ KK
Sbjct: 616 TATYLINRIPSRALVDSSKTPYEMWHNKK 644

[Close]

BLAST of Cmc09g0244301 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-18
Identity = 49/146 (33.56%), Postives = 87/146 (59.59%), Query Frame = 0


Query: 5   SLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDKGGEF 64
           S+D   Y++IF+D ++R +W+Y L+ KS+  + F  FK+ VE +    I +L SD GGEF
Sbjct: 517 SIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF 576

Query: 65  LSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWIEAVS 124
           +      +  ++GI    +  +T E NG++E+K+R +VEM  ++L    +   +W  A S
Sbjct: 577 VV--LRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFS 636

Query: 125 TSIYLLNISPTKAVMNKTPFEAWYGK 151
            ++YL+N  PT  +  ++PF+  +G+
Sbjct: 637 VAVYLINRLPTPLLQLQSPFQKLFGQ 660

[Close]

BLAST of Cmc09g0244301 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-16
Identity = 46/145 (31.72%), Postives = 84/145 (57.93%), Query Frame = 0


Query: 5   SLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDKGGEF 64
           S D   Y++IF+D ++R +W+Y L+ KS+  E F  FK  +E +    I +  SD GGEF
Sbjct: 538 SHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF 597

Query: 65  LSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWIEAVS 124
           ++     ++ ++GI    +  +T E NG++E+K+R +VE   ++L    +   +W  A +
Sbjct: 598 VA--LWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFA 657

Query: 125 TSIYLLNISPTKAVMNKTPFEAWYG 150
            ++YL+N  PT  +  ++PF+  +G
Sbjct: 658 VAVYLINRLPTPLLQLESPFQKLFG 680

[Close]

BLAST of Cmc09g0244301 vs. ExPASy Swiss-Prot
Match: Q12337 (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-GR1 PE=5 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-10
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 11  YFLIFIDDYSRMSWIYFLESKSE--TFEKFKHFKAKVEKQSGMFIKSLRSDKGGEFLSNN 70
           YF+ F D+ +R  W+Y L  + E      F    A ++ Q    +  ++ D+G E+ +  
Sbjct: 682 YFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKT 741

Query: 71  FNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWIEAVSTSIY 130
            + F+   GI    TT   S  +GVAE+ NRT++   R++L   GL N  W  AV  S  
Sbjct: 742 LHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTI 801

Query: 131 LLN--ISPTK 137
           + N  +SP K
Sbjct: 802 IRNSLVSPKK 811

[Close]

BLAST of Cmc09g0244301 vs. ExPASy TrEMBL
Match: A0A5A7TC06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001200 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK
Sbjct: 242 MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 301

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI
Sbjct: 302 GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 361

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKKTPM 155
           EAVSTSIYLLNISPTKAVMNKTPFEAWYGKKTP+
Sbjct: 362 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKKTPI 395

[Close]

BLAST of Cmc09g0244301 vs. ExPASy TrEMBL
Match: A0A5D3DWC7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00230 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.8e-66
Identity = 131/146 (89.73%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQTKSL  SFYFLIFIDDYSRMSWIYFL+S+SETFEKFKHFKAKVEKQSGMFIKS RSD+
Sbjct: 436 MQTKSLGGSFYFLIFIDDYSRMSWIYFLKSQSETFEKFKHFKAKVEKQSGMFIKSFRSDR 495

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GG+FLSNNFNHF EE+GIHRELTT YTSEQNGVAE+KNRTVVEMARS+LQMKGLSNDFW 
Sbjct: 496 GGDFLSNNFNHFCEEHGIHRELTTPYTSEQNGVAERKNRTVVEMARSMLQMKGLSNDFWP 555

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEA 147
           EA STSIYLLNISPTK VMNKTPFEA
Sbjct: 556 EAASTSIYLLNISPTKVVMNKTPFEA 581

[Close]

BLAST of Cmc09g0244301 vs. ExPASy TrEMBL
Match: A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.0e-64
Identity = 129/145 (88.97%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQTKS   SFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSD+
Sbjct: 614 MQTKSFGRSFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDR 673

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           G EFLSNNFNHF +E+GIHRELTT YT EQNGVAE+KN+TVVEMARS+LQMKGL NDFW 
Sbjct: 674 GREFLSNNFNHFCKEHGIHRELTTPYTPEQNGVAERKNQTVVEMARSMLQMKGLLNDFWA 733

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFE 146
           EAVS SIYLLNISPTKAVMNKTPFE
Sbjct: 734 EAVSISIYLLNISPTKAVMNKTPFE 758

[Close]

BLAST of Cmc09g0244301 vs. ExPASy TrEMBL
Match: A0A0V0IV83 (Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 112/151 (74.17%), Postives = 125/151 (82.78%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQTKSL  S YFL+FIDDYS MSW+YFLESKSETFEKF+ FKA VE QS   IK LR D+
Sbjct: 518 MQTKSLGGSRYFLLFIDDYSGMSWVYFLESKSETFEKFQKFKALVENQSSCCIKVLRKDR 577

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GGEF+SN FN F E  GIHRELTT YT EQNGVAE+KNRTVVEMARS+LQ K L+N FW 
Sbjct: 578 GGEFVSNEFNLFCETNGIHRELTTPYTPEQNGVAERKNRTVVEMARSMLQAKELANQFWA 637

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKK 152
           EAV+ SIYLLN+SPTK VMNKTP+EAW+ +K
Sbjct: 638 EAVAASIYLLNLSPTKVVMNKTPYEAWHCRK 668

[Close]

BLAST of Cmc09g0244301 vs. ExPASy TrEMBL
Match: A5AL21 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031870 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.7e-53
Identity = 107/151 (70.86%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MQTKSLDESFYFLIFIDDYSRMSWIYFLESKSETFEKFKHFKAKVEKQSGMFIKSLRSDK 60
           MQT S   S YFL+F DD+SRMSW+YFL+SK+ETFE FK FKA VEKQSG  IK LR+D+
Sbjct: 509 MQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDR 568

Query: 61  GGEFLSNNFNHFYEEYGIHRELTTLYTSEQNGVAEKKNRTVVEMARSILQMKGLSNDFWI 120
           GGEFLSN+F  F EE G+HRELTT Y+ EQNGVAE+KNRTVVEMARS+++ K LSN FW 
Sbjct: 569 GGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFWA 628

Query: 121 EAVSTSIYLLNISPTKAVMNKTPFEAWYGKK 152
           E V+T++YLLNISPTKAV+N+TP+EAWYG+K
Sbjct: 629 EGVATAVYLLNISPTKAVLNRTPYEAWYGRK 659

[Close]

BLAST of Cmc09g0244301 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.8e-04
Identity = 18/51 (35.29%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 98  NRTVVEMARSILQMKGLSNDFWIEAVSTSIYLLNISPTKAVMNKTPFEAWY 149
           NRT++E  RS+L   GL   F  +A +T+++++N  P+ A+    P E W+
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWF 52

The following BLAST results are available for this feature:

BLAST of Cmc09g0244301 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040613.1	1.2e-79	99.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK28117.1	9.9e-66	89.73	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
TYK27735.1	4.2e-64	88.97	putative gag-pol polyprotein, identical [Cucumis melo var. makuwa]	[more]
CAN60366.1	5.6e-53	70.86	hypothetical protein VITISV_031870 [Vitis vinifera]	[more]
RVW26239.1	5.6e-53	70.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc09g0244301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.7e-29	43.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-21	38.26	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	4.7e-18	33.56	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.4e-16	31.72	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12337	3.6e-10	31.54	Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Cmc09g0244301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TC06	5.8e-80	99.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DWC7	4.8e-66	89.73	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DWP2	2.0e-64	88.97	Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0V0IV83	1.2e-53	74.17	Putative ovule protein (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
A5AL21	2.7e-53	70.86	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031870 PE=4 SV=1	[more]

BLAST of Cmc09g0244301 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	6.8e-04	35.29	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 10..86 e-value: 4.2E-10 score: 39.8
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 19.592947
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..154 e-value: 1.0E-34 score: 121.6
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 11..128
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 11..128
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0244301.1	Cmc09g0244301.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006013	mannose metabolic process
molecular_function	GO:0004559	alpha-mannosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding