Cmc09g0244041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0244041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr09: 6696429 .. 6696917 (-)
RNA-Seq Expression	Cmc09g0244041
Synteny	Cmc09g0244041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTAATAAATTACACTAGACCTGATATTGCATATGTTGTCAATAGATTGAGTAGATATACACATAATCTTGATAGATACCACTGGGATGCCTTACGCCATCTATTGAGATATCTTAAAGGGACGATAGATTACTGTTTACACTTCAACAAATTTTCTGCCGTATTAAAAGGATACTGTGATGCAAACTGGGTCACAGATAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTGCTCAGAGGTGGAGCAATATCTTGGAAGTCTGCAAAACAGACTTGTATAGCTAGATCCACAATGGAATCCAAGTTTATAGCATTAGAGTTGGTAGGACAGGAGGCTGAGTGGATAAAAAATCTACTAGGAGATGTATCATTGTGGGGGACATCTGTACCTGTGTCCATACAGTGTGATTCGCAAGCTGCGATATGTACTGTCAAGAATATGGAAAGAGTAGACACATACGTCTTAGGCATGCAGTAG

mRNA sequence

ATGTATTTAATAAATTACACTAGACCTGATATTGCATATGTTGTCAATAGATTGAGTAGATATACACATAATCTTGATAGATACCACTGGGATGCCTTACGCCATCTATTGAGATATCTTAAAGGGACGATAGATTACTGTTTACACTTCAACAAATTTTCTGCCGTATTAAAAGGATACTGTGATGCAAACTGGGTCACAGATAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTGCTCAGAGGTGGAGCAATATCTTGGAAGTCTGCAAAACAGACTTGTATAGCTAGATCCACAATGGAATCCAAGTTTATAGCATTAGAGTTGGTAGGACAGGAGGCTGAGTGGATAAAAAATCTACTAGGAGATGTATCATTGTGGGGGACATCTGTACCTGTGTCCATACAGTGTGATTCGCAAGCTGCGATATGTACTGTCAAGAATATGGAAAGAGTAGACACATACGTCTTAGGCATGCAGTAG

Coding sequence (CDS)

ATGTATTTAATAAATTACACTAGACCTGATATTGCATATGTTGTCAATAGATTGAGTAGATATACACATAATCTTGATAGATACCACTGGGATGCCTTACGCCATCTATTGAGATATCTTAAAGGGACGATAGATTACTGTTTACACTTCAACAAATTTTCTGCCGTATTAAAAGGATACTGTGATGCAAACTGGGTCACAGATAATGATGAGGTTAACTCCACTAGTGGGTATGTATTTTTGCTCAGAGGTGGAGCAATATCTTGGAAGTCTGCAAAACAGACTTGTATAGCTAGATCCACAATGGAATCCAAGTTTATAGCATTAGAGTTGGTAGGACAGGAGGCTGAGTGGATAAAAAATCTACTAGGAGATGTATCATTGTGGGGGACATCTGTACCTGTGTCCATACAGTGTGATTCGCAAGCTGCGATATGTACTGTCAAGAATATGGAAAGAGTAGACACATACGTCTTAGGCATGCAGTAG

Protein sequence

MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGYCDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIKNLLGDVSLWGTSVPVSIQCDSQAAICTVKNMERVDTYVLGMQ

Homology

[Close]

BLAST of Cmc09g0244041 vs. NCBI nr
Match: TYK07981.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.0 bits (746), Expect = 3.2e-75
Identity = 137/150 (91.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MYL+NYTRPDIAY V+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHFNKF AVL+GY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
            NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 1102

[Close]

BLAST of Cmc09g0244041 vs. NCBI nr
Match: TYK23349.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 5.5e-75
Identity = 137/150 (91.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
           MYL+NYTRPDIAYVV+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KF AVL+GY
Sbjct: 849 MYLMNYTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 908

Query: 61  CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
           CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 909 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 968

Query: 121 NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
           NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 969 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 998

[Close]

BLAST of Cmc09g0244041 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MYL+NYTRPDIAY V+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KF AVL+GY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
            NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 1102

[Close]

BLAST of Cmc09g0244041 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MYL+NYTRPDIAY V+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KF AVL+GY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
            NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 1102

[Close]

BLAST of Cmc09g0244041 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MYL+NYTRPDIAY V+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KF AVL+GY
Sbjct: 1132 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1191

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 1192 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1251

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
            NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 1252 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 1281

[Close]

BLAST of Cmc09g0244041 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MY +  TRPDIA+ V  +SR+  N  + HW+A++ +LRYL+GT   CL F     +LKGY
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGY 1178

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
             DA+   D D   S++GY+F   GGAISW+S  Q C+A ST E+++IA    G+E  W+K
Sbjct: 1179 TDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLK 1238

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
              L ++ L      V   CDSQ+AI   KN
Sbjct: 1239 RFLQELGLHQKEYVV--YCDSQSAIDLSKN 1266

[Close]

BLAST of Cmc09g0244041 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-23
Identity = 56/140 (40.00%), Postives = 85/140 (60.71%), Query Frame = 0


Query: 6    YTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LKGYCDAN 65
            +TRPD++Y VNRLS+Y H     HW+AL+ +LRYL GT D+ +   K + + L  Y DA+
Sbjct: 1240 FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDAD 1299

Query: 66   WVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIKNLLG 125
            W  D D+  ST+GY+  L    ISW S KQ  + RS+ E+++ ++     E +WI +LL 
Sbjct: 1300 WAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLT 1359

Query: 126  DVSLWGTSVPVSIQCDSQAA 145
            ++ +  +  PV I CD+  A
Sbjct: 1360 ELGIQLSHPPV-IYCDNVGA 1378

[Close]

BLAST of Cmc09g0244041 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-22
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1   MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKF-SAVLKG 60
           MYL+  TRPD+A  V  LS++  +    HW AL+ +LRYL+ T  Y L F +  +A L G
Sbjct: 14  MYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVG 73

Query: 61  YCDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWI 120
           Y DA+W  D +   STSGY+F L GG +SW+S KQ  +A S+ E +++AL    QEA W+
Sbjct: 74  YSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc09g0244041 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-21
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 6    YTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LKGYCDAN 65
            +TRPDI+Y VNRLS++ H     H  AL+ +LRYL GT ++ +   K + + L  Y DA+
Sbjct: 1257 FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDAD 1316

Query: 66   WVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIKNLLG 125
            W  D D+  ST+GY+  L    ISW S KQ  + RS+ E+++ ++     E +WI +LL 
Sbjct: 1317 WAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLT 1376

Query: 126  DVSLWGTSVPVSIQCDSQAA 145
            ++ +  T  PV I CD+  A
Sbjct: 1377 ELGIRLTRPPV-IYCDNVGA 1395

[Close]

BLAST of Cmc09g0244041 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 7.6e-19
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNK---FSAVL 60
            MY++  TRPD+   VN LSRY+   +   W  L+ +LRYLKGTID  L F K   F   +
Sbjct: 1189 MYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKI 1248

Query: 61   KGYCDANWVTDNDEVNSTSGYVF-LLRGGAISWKSAKQTCIARSTMESKFIALELVGQEA 120
             GY D++W     +  ST+GY+F +     I W + +Q  +A S+ E++++AL    +EA
Sbjct: 1249 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1308

Query: 121  EWIKNLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
             W+K LL  +++     P+ I  D+Q  I    N
Sbjct: 1309 LWLKFLLTSINI-KLENPIKIYEDNQGCISIANN 1341

[Close]

BLAST of Cmc09g0244041 vs. ExPASy TrEMBL
Match: A0A5D3C7Z8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001160 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75
Identity = 137/150 (91.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MYL+NYTRPDIAY V+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHFNKF AVL+GY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
            NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 1102

[Close]

BLAST of Cmc09g0244041 vs. ExPASy TrEMBL
Match: A0A5D3DJE2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004120 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.7e-75
Identity = 137/150 (91.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
           MYL+NYTRPDIAYVV+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KF AVL+GY
Sbjct: 849 MYLMNYTRPDIAYVVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 908

Query: 61  CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
           CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 909 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 968

Query: 121 NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
           NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 969 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 998

[Close]

BLAST of Cmc09g0244041 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.8e-75
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MYL+NYTRPDIAY V+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KF AVL+GY
Sbjct: 1132 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1191

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 1192 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1251

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
            NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 1252 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 1281

[Close]

BLAST of Cmc09g0244041 vs. ExPASy TrEMBL
Match: A0A5A7SP23 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001760 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.8e-75
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MYL+NYTRPDIAY V+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KF AVL+GY
Sbjct: 1090 MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1149

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 1150 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1209

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
            NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 1210 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 1239

[Close]

BLAST of Cmc09g0244041 vs. ExPASy TrEMBL
Match: A0A5A7UNH1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold104G00100 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.8e-75
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1    MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAVLKGY 60
            MYL+NYTRPDIAY V+RLSRYTHN +RYHWDALRHLLRYLKGTIDYCLHF KF AVL+GY
Sbjct: 953  MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKKFPAVLEGY 1012

Query: 61   CDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWIK 120
            CDANWVTDNDEVNSTSGYVFLL GGAISWKS KQTCIARSTMES+FIALEL GQEAEWIK
Sbjct: 1013 CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAEWIK 1072

Query: 121  NLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
            NLLGDV LWGTSVPVSIQCDSQAAICT KN
Sbjct: 1073 NLLGDVPLWGTSVPVSIQCDSQAAICTAKN 1102

[Close]

BLAST of Cmc09g0244041 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-16
Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 0


Query: 1   MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LKG 60
           MYL   TR DI++ VN+LS+++      H  A+  +L Y+KGT+   L ++  + + L+ 
Sbjct: 386 MYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQV 445

Query: 61  YCDANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEWI 120
           + DA++ +  D   ST+GY   L    ISWKS KQ  +++S+ E+++ AL     E  W+
Sbjct: 446 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWL 505

Query: 121 KNLLGDVSLWGTSVPVSIQCDSQAAICTVKN 151
                ++ L   S P  + CD+ AAI    N
Sbjct: 506 AQFFRELQL-PLSKPTLLFCDNTAAIHIATN 534

[Close]

BLAST of Cmc09g0244041 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 40/116 (34.48%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 4   INYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LKGYCD 63
           +  TRPDI+Y VN + +  H      +D L+ +LRY+KGTI + L+ +K S + ++ +CD
Sbjct: 110 LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCD 169

Query: 64  ANWVTDNDEVNSTSGYVFLLRGGAISWKSAKQTCIARSTMESKFIALELVGQEAEW 119
           ++W        ST+G+   L    ISW + +Q  ++RS+ E+++ AL L   E  W
Sbjct: 170 SDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc09g0244041 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 1  MYLINYTRPDIAYVVNRLSRYTHNLDRYHWDALRHLLRYLKGTIDYCLHFNKFSAV-LKG 60
          MYL   TRPD+ + VNRLS+++         A+  +L Y+KGT+   L ++  S + LK 
Sbjct: 1  MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 61 YCDANWVTDNDEVNSTSGYVFLL 83
          + D++W +  D   S +G+  L+
Sbjct: 61 FADSDWASCPDTRRSVTGFCSLV 82

The following BLAST results are available for this feature:

BLAST of Cmc09g0244041 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07981.1	3.2e-75	91.33	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23349.1	5.5e-75	91.33	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	1.6e-74	90.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	1.6e-74	90.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06518.1	1.6e-74	90.67	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0244041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-28	44.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	6.7e-23	40.00	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P0CV72	5.6e-22	45.00	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q94HW2	2.8e-21	39.29	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	7.6e-19	36.36	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc09g0244041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7Z8	1.6e-75	91.33	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DJE2	2.7e-75	91.33	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C5T2	7.8e-75	90.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SP23	7.8e-75	90.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UNH1	7.8e-75	90.67	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc09g0244041 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.6e-16	33.11	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.4e-15	34.48	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	2.6e-06	33.73	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 61..148
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 61..148
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 58..150 e-value: 7.67454E-37 score: 121.806
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 8..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0244041.1	Cmc09g0244041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding