Cmc09g0242741 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0242741
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr09: 5022592 .. 5023411 (-)
RNA-Seq Expression	Cmc09g0242741
Synteny	Cmc09g0242741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAACCTAAGGGCTATGAGGTAAAGGGTAAGAAAGATATGGTTTATCGTCTTCATAAGTCCATCTATGGACTAAAACAATCTCTAAGATAGTGGTATATTGGGTTTGATATTTTCATTCTAAAGCAGGGATTCCACAGGAACTCATACGATGCTTGTGCTTATTGGAAACTATCTCAGAAAGGTACGTACATTTATCTACTATTATATGTAGATGATATGATACTAGTGTCTATGGATTATGCTGAAATATGTGCACTCAAGAAATAGTTGAGTAATGAGTTTGAAATAAAAGATTTAGGTGAACTAAAAAGGATACTAAGCATGGATGTAAAAAGAGATAAAGAGAAAGGTTTGTTAACCATTTCGTAGGAGAGTTATGTGATTAAATTGCTTGAAAAGTATAATATGTCTGGTCGCAAGATAGTCTCAATGCCCTTAGCATCTCATTTTAGACTTTCTTTGTCTCAATGTCCTGATACTGAACAAGAAAGGTTAGAGATGTCTAATATTCCATATTATAATGCTGTTGGAAGTATTATGTATCTGATGATTTGTACTAGGCCTAACTTGGGTTATGCTATGAGTATGATTAGTAGGTTTTATGTCAAATCCTGGAAAGGAACATTGGAAAGCTGTTAAATGGGTGTTACGATATTTGAAAGGTAGTGTCAGTGTATCATTGTGTTATAGTAGGGATTGTGATAAATCAACACTGTGGGAAGGTTTCACAGATGTAGATTATGATGCAGATCTTGATAAAAGAAGGTCCTTATCAAGTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGA

mRNA sequence

ATGGCTCAACCTAAGGGCTATGAGGGATTCCACAGGAACTCATACGATGCTTGTGCTTATTGGAAACTATCTCAGAAAGGTTTTATGTCAAATCCTGGAAAGGAACATTGGAAAGCTGTTAAATGGGTGTTACGATATTTGAAAGGTAGTGTCAGTGTATCATTGTGTTATAGTAGGGATTGTGATAAATCAACACTGTGGGAAGGTTTCACAGATGTAGATTATGATGCAGATCTTGATAAAAGAAGGTCCTTATCAAGTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGA

Coding sequence (CDS)

ATGGCTCAACCTAAGGGCTATGAGGGATTCCACAGGAACTCATACGATGCTTGTGCTTATTGGAAACTATCTCAGAAAGGTTTTATGTCAAATCCTGGAAAGGAACATTGGAAAGCTGTTAAATGGGTGTTACGATATTTGAAAGGTAGTGTCAGTGTATCATTGTGTTATAGTAGGGATTGTGATAAATCAACACTGTGGGAAGGTTTCACAGATGTAGATTATGATGCAGATCTTGATAAAAGAAGGTCCTTATCAAGTCACATTTTTCGCTTGTATGGTAATGTTGTCAGTTGA

Protein sequence

MAQPKGYEGFHRNSYDACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS

Homology

[Close]

BLAST of Cmc09g0242741 vs. NCBI nr
Match: KAA0067243.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] >TYK10853.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 83/175 (47.43%), Postives = 85/175 (48.57%), Query Frame = 0


Query: 8    EGFHRNSYDACAYWKLSQKG---------------------------------------- 67
            +GFHRNSYDAC YWKLSQKG                                        
Sbjct: 834  QGFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVSKDYVEICELKKQLSNEFEMKDLGE 893

Query: 68   --------------------------------------------FMSNPGKEHWKAVKWV 99
                                                        FMSNPGKEHWKAVKWV
Sbjct: 894  LKRILGMDAISTPLASHFRLSSSQCPVTKQERPDLGYAMSMISRFMSNPGKEHWKAVKWV 953

[Close]

BLAST of Cmc09g0242741 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-30
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 28   FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSS 87
            FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS 
Sbjct: 982  FMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLDKRRSLSG 1041

Query: 88   HIFRLYGNVVS 99
            HIFRLYGNVVS
Sbjct: 1042 HIFRLYGNVVS 1052

[Close]

BLAST of Cmc09g0242741 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-30
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 28   FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSS 87
            FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS 
Sbjct: 1124 FMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLDKRRSLSG 1183

Query: 88   HIFRLYGNVVS 99
            HIFRLYGNVVS
Sbjct: 1184 HIFRLYGNVVS 1194

[Close]

BLAST of Cmc09g0242741 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-30
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 28   FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSS 87
            FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS 
Sbjct: 1152 FMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLDKRRSLSG 1211

Query: 88   HIFRLYGNVVS 99
            HIFRLYGNVVS
Sbjct: 1212 HIFRLYGNVVS 1222

[Close]

BLAST of Cmc09g0242741 vs. NCBI nr
Match: KAA0060051.1 (retrotransposon ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 7.3e-30
Identity = 70/98 (71.43%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 1   MAQPKGYEGFHRNSYDACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRD 60
           MAQPKGY+   +       Y       FMSNP KEHW AVKWVLRY KGS SVSLCYS+D
Sbjct: 377 MAQPKGYKLKGKEDMAYLGYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKD 436

Query: 61  CDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS 99
            DKSTL EGFTDVDY ADLDKRRSLS HIFRLYGNVVS
Sbjct: 437 RDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVS 474

[Close]

BLAST of Cmc09g0242741 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.4e-13
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 28   FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSS 87
            F+ NPGKEHW+AVKW+LRYL+G+    LC+        + +G+TD D   D+D R+S + 
Sbjct: 1139 FLENPGKEHWEAVKWILRYLRGTTGDCLCFG---GSDPILKGYTDADMAGDIDNRKSSTG 1198

Query: 88   HIFRLYGNVVS 99
            ++F   G  +S
Sbjct: 1199 YLFTFSGGAIS 1206

[Close]

BLAST of Cmc09g0242741 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 17  ACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYD 76
           A A   LSQ  F S+P   HW+A+K VLRYL+ + +  L ++R      +  G++D D+ 
Sbjct: 25  AAAVGVLSQ--FASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLV--GYSDADWA 84

Query: 77  ADLDKRRSLSSHIFRLYGNVVS 99
            D++ RRS S ++F+L G  VS
Sbjct: 85  GDVESRRSTSGYLFKLNGGCVS 102

[Close]

BLAST of Cmc09g0242741 vs. ExPASy TrEMBL
Match: A0A5A7VGM4 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00240 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.4e-32
Identity = 83/175 (47.43%), Postives = 85/175 (48.57%), Query Frame = 0


Query: 8    EGFHRNSYDACAYWKLSQKG---------------------------------------- 67
            +GFHRNSYDAC YWKLSQKG                                        
Sbjct: 834  QGFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVSKDYVEICELKKQLSNEFEMKDLGE 893

Query: 68   --------------------------------------------FMSNPGKEHWKAVKWV 99
                                                        FMSNPGKEHWKAVKWV
Sbjct: 894  LKRILGMDAISTPLASHFRLSSSQCPVTKQERPDLGYAMSMISRFMSNPGKEHWKAVKWV 953

[Close]

BLAST of Cmc09g0242741 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.3e-31
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 28   FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSS 87
            FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS 
Sbjct: 1124 FMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLDKRRSLSG 1183

Query: 88   HIFRLYGNVVS 99
            HIFRLYGNVVS
Sbjct: 1184 HIFRLYGNVVS 1194

[Close]

BLAST of Cmc09g0242741 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.3e-31
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 28   FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSS 87
            FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS 
Sbjct: 982  FMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLDKRRSLSG 1041

Query: 88   HIFRLYGNVVS 99
            HIFRLYGNVVS
Sbjct: 1042 HIFRLYGNVVS 1052

[Close]

BLAST of Cmc09g0242741 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.3e-31
Identity = 66/71 (92.96%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 28   FMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRDCDKSTLWEGFTDVDYDADLDKRRSLSS 87
            FMSNPGKEHWKAVKWVLRYLKGS SVSLCYSRDCDKSTL EGFTD DY ADLDKRRSLS 
Sbjct: 1152 FMSNPGKEHWKAVKWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDADYAADLDKRRSLSG 1211

Query: 88   HIFRLYGNVVS 99
            HIFRLYGNVVS
Sbjct: 1212 HIFRLYGNVVS 1222

[Close]

BLAST of Cmc09g0242741 vs. ExPASy TrEMBL
Match: A0A5A7V2R7 (Retrotransposon ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold160G00120 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.5e-30
Identity = 70/98 (71.43%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 1   MAQPKGYEGFHRNSYDACAYWKLSQKGFMSNPGKEHWKAVKWVLRYLKGSVSVSLCYSRD 60
           MAQPKGY+   +       Y       FMSNP KEHW AVKWVLRY KGS SVSLCYS+D
Sbjct: 377 MAQPKGYKLKGKEDMAYLGYAMSMISRFMSNPKKEHWNAVKWVLRYFKGSASVSLCYSKD 436

Query: 61  CDKSTLWEGFTDVDYDADLDKRRSLSSHIFRLYGNVVS 99
            DKSTL EGFTDVDY ADLDKRRSLS HIFRLYGNVVS
Sbjct: 437 RDKSTLLEGFTDVDYVADLDKRRSLSGHIFRLYGNVVS 474

The following BLAST results are available for this feature:

BLAST of Cmc09g0242741 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067243.1	1.3e-31	47.43	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
TYK13826.1	1.9e-30	92.96	putative polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047995.1	1.9e-30	92.96	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
KAA0050719.1	1.9e-30	92.96	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060051.1	7.3e-30	71.43	retrotransposon ty1-copia subclass [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0242741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.4e-13	42.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	1.4e-07	39.02	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc09g0242741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGM4	6.4e-32	47.43	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5A7U2U7	9.3e-31	92.96	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5D3CTV2	9.3e-31	92.96	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	9.3e-31	92.96	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7V2R7	3.5e-30	71.43	Retrotransposon ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of Cmc09g0242741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0242741.1	Cmc09g0242741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding