Cmc09g0242721 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0242721
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3-gypsy retrotransposon protein
Location	CMiso1.1chr09: 5005419 .. 5005697 (-)
RNA-Seq Expression	Cmc09g0242721
Synteny	Cmc09g0242721

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTGACAGTCAAGAACCGCTACCCCTTGCCTAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTATCTTTTCTAAGATCGACCTGCGATTCGGCTATCACCAGCTGAGGATCAGGGACAGTGATATTCCTAAGACGACCTTCCGTTCAAGATACGGACATTACGAGTTCATTGTGATGTCCTTGATCTTGGGTAAGTTGCTTCGAACAACTCTTGGACTTCTTTTCCATGAAGGTTAG

mRNA sequence

ATGCGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTGACAGTCAAGAACCGCTACCCCTTGCCTAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTATCTTTTCTAAGATCGACCTGCGATTCGGCTATCACCAGCTGAGGATCAGGGACAGTGATATTCCTAAGACGACCTTCCGTTCAAGATACGGACATTACGAGTTCATTGTGATGTCCTTGATCTTGGGTAAGTTGCTTCGAACAACTCTTGGACTTCTTTTCCATGAAGGTTAG

Coding sequence (CDS)

ATGCGCCTTTGCATTGACTACAAAGAGCTGAACAAGGTGACAGTCAAGAACCGCTACCCCTTGCCTAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTATCTTTTCTAAGATCGACCTGCGATTCGGCTATCACCAGCTGAGGATCAGGGACAGTGATATTCCTAAGACGACCTTCCGTTCAAGATACGGACATTACGAGTTCATTGTGATGTCCTTGATCTTGGGTAAGTTGCTTCGAACAACTCTTGGACTTCTTTTCCATGAAGGTTAG

Protein sequence

MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTFRSRYGHYEFIVMSLILGKLLRTTLGLLFHEG

Homology

[Close]

BLAST of Cmc09g0242721 vs. NCBI nr
Match: KAA0066101.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 72/88 (81.82%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVT+KNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT 
Sbjct: 641 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FRSRYGHYEFIVMSLILGKLLRTTLGLL 89
           FRSRYGHYEFIVMS  L   L   + L+
Sbjct: 701 FRSRYGHYEFIVMSFGLTNALAVFMDLM 728

[Close]

BLAST of Cmc09g0242721 vs. NCBI nr
Match: KAA0051386.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT 
Sbjct: 310 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 369

Query: 61  FRSRYGHYEFIVMS 75
           FRSRYGHYEFIVMS
Sbjct: 370 FRSRYGHYEFIVMS 383

[Close]

BLAST of Cmc09g0242721 vs. NCBI nr
Match: TYK04344.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT 
Sbjct: 414 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 473

Query: 61  FRSRYGHYEFIVMS 75
           FRSRYGHYEFIVMS
Sbjct: 474 FRSRYGHYEFIVMS 487

[Close]

BLAST of Cmc09g0242721 vs. NCBI nr
Match: TYJ97414.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVTVKNRYPLP IDDLFDQLQGATIFSKIDLR GYHQLRIRDSDIPKTT
Sbjct: 116 MRLCIDYRELNKVTVKNRYPLPMIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTT 175

Query: 61  FRSRYGHYEFIVMS 75
           FRSRYGHYEFIVMS
Sbjct: 176 FRSRYGHYEFIVMS 189

[Close]

BLAST of Cmc09g0242721 vs. NCBI nr
Match: KAA0032146.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.9e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1    MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
            MRLCIDYKELNKVTVKN YPLPRIDDLFDQLQGAT+FSK+DLR GYHQLRIRDSDIPKTT
Sbjct: 1349 MRLCIDYKELNKVTVKNCYPLPRIDDLFDQLQGATVFSKVDLRSGYHQLRIRDSDIPKTT 1408

Query: 61   FRSRYGHYEFIVMS 75
            FRSRYGHYEFIVMS
Sbjct: 1409 FRSRYGHYEFIVMS 1422

[Close]

BLAST of Cmc09g0242721 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.3e-22
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
          +R+CIDY+ L KVT+KN+YP+PR+DDLFD+L  AT F+K+DLR GY Q+RI   D PKTT
Sbjct: 6  LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65

Query: 61 FRSRYGHYEFIVMSLILGKLLRTTLGLL 89
            +RYG +EF VM   L   L T   L+
Sbjct: 66 CVTRYGSFEFRVMPFGLTNALATFCNLM 93

[Close]

BLAST of Cmc09g0242721 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-14
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 2   RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTF 61
           RLC+DY+ LNK T+ + +PLPRID+L  ++  A IF+ +DL  GYHQ+ +   D  KT F
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  RSRYGHYEFIVM 74
            +  G YE+ VM
Sbjct: 707 VTPSGKYEYTVM 718

[Close]

BLAST of Cmc09g0242721 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-14
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 2   RLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTTF 61
           RLC+DY+ LNK T+ + +PLPRID+L  ++  A IF+ +DL  GYHQ+ +   D  KT F
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  RSRYGHYEFIVM 74
            +  G YE+ VM
Sbjct: 733 VTPSGKYEYTVM 744

[Close]

BLAST of Cmc09g0242721 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-14
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           +R+ +DYK LNK    N YPLP I+ L  ++QG+TIF+K+DL+  YH +R+R  D  K  
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVM 74
           FR   G +E++VM
Sbjct: 522 FRCPRGVFEYLVM 534

[Close]

BLAST of Cmc09g0242721 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-14
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           +R+ +DYK LNK    N YPLP I+ L  ++QG+TIF+K+DL+  YH +R+R  D  K  
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FRSRYGHYEFIVM 74
           FR   G +E++VM
Sbjct: 522 FRCPRGVFEYLVM 534

[Close]

BLAST of Cmc09g0242721 vs. ExPASy TrEMBL
Match: A0A5A7VK60 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 72/88 (81.82%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVT+KNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT 
Sbjct: 641 MRLCIDYRELNKVTIKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 700

Query: 61  FRSRYGHYEFIVMSLILGKLLRTTLGLL 89
           FRSRYGHYEFIVMS  L   L   + L+
Sbjct: 701 FRSRYGHYEFIVMSFGLTNALAVFMDLM 728

[Close]

BLAST of Cmc09g0242721 vs. ExPASy TrEMBL
Match: A0A5A7UB12 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001260 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT 
Sbjct: 310 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 369

Query: 61  FRSRYGHYEFIVMS 75
           FRSRYGHYEFIVMS
Sbjct: 370 FRSRYGHYEFIVMS 383

[Close]

BLAST of Cmc09g0242721 vs. ExPASy TrEMBL
Match: A0A5D3BEF2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002390 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-33
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVTVKNRYPLP IDDLFDQLQGATIFSKIDLR GYHQLRIRDSDIPKTT
Sbjct: 116 MRLCIDYRELNKVTVKNRYPLPMIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSDIPKTT 175

Query: 61  FRSRYGHYEFIVMS 75
           FRSRYGHYEFIVMS
Sbjct: 176 FRSRYGHYEFIVMS 189

[Close]

BLAST of Cmc09g0242721 vs. ExPASy TrEMBL
Match: A0A5D3BZD2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00070 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT 
Sbjct: 414 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 473

Query: 61  FRSRYGHYEFIVMS 75
           FRSRYGHYEFIVMS
Sbjct: 474 FRSRYGHYEFIVMS 487

[Close]

BLAST of Cmc09g0242721 vs. ExPASy TrEMBL
Match: A0A5A7VBY3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00920 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MRLCIDYKELNKVTVKNRYPLPRIDDLFDQLQGATIFSKIDLRFGYHQLRIRDSDIPKTT 60
           MRLCIDY+ELNKVTVKNRYPLPRIDDLFDQLQGAT+FSKIDLR GYHQLRIRDSDIPKT 
Sbjct: 867 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 926

Query: 61  FRSRYGHYEFIVMS 75
           FRSRYGHYEF+VMS
Sbjct: 927 FRSRYGHYEFVVMS 940

The following BLAST results are available for this feature:

BLAST of Cmc09g0242721 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066101.1	2.3e-33	81.82	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0051386.1	3.0e-33	94.59	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04344.1	3.0e-33	94.59	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYJ97414.1	3.0e-33	95.95	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032146.1	3.9e-33	94.59	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0242721 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	9.3e-22	55.68	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q99315	2.5e-14	47.22	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.5e-14	47.22	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	5.5e-14	46.58	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	5.5e-14	46.58	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc09g0242721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VK60	1.1e-33	81.82	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7UB12	1.4e-33	94.59	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5D3BEF2	1.4e-33	95.95	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002390 P...	[more]
A0A5D3BZD2	1.4e-33	94.59	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold67...	[more]
A0A5A7VBY3	1.9e-33	93.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]

BLAST of Cmc09g0242721 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..46 e-value: 1.7E-30 score: 107.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..72 e-value: 1.7E-30 score: 107.9
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..74
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..74
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..73 e-value: 2.58819E-34 score: 113.844
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0242721.1	Cmc09g0242721.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding