Cmc09g0242641 (gene) Melon (Charmono) v1.1

Overview
NameCmc09g0242641
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionActin-11
LocationCMiso1.1chr09: 4919177 .. 4920990 (+)
RNA-Seq ExpressionCmc09g0242641
SyntenyCmc09g0242641
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGAGAGATGAATCATCCTATTATTTGAATTTATTTTAAAAAATGTTTTGAAATCAAATAATAATGTGAAAAATTAGTAATAATACATTTAAATTTTACTTTTCATATTGGTATGGTTATGGCCATTGGTATTTAAGGGGGAGTTGGGTGGCGGTCAGATTGAATTTTGGAGTCTTCCTAAAGGGAAATTGTAATCTTGGTGTTGGTGGGTGTTCAGCTGAATCATGACTCAGAAATTCGGCGGTGGGTTGCGCCCTACGGGAACTCCCTCTGTTGGTTGGTCTTTTGTCGTCGTCGTCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACCACATCTACAAACCAAATCTTGTACTCTTCCTCTCTATTTTCCTCTTTCTGCTTTGTGCATATACACGTAGACTGACCCTTTAATGATTGTTCATTGTCGGAAATATAGCCATGTATTTGTAGATTACTGGGTGCATTTCAACTTAAACAATGCCTGTAACCTGTTCGATAAAATGCCCATCTTGTTATTTTGTGCGAATTGTTTTATTGTTTCACTGTTAGCCTGTTTTTTTATCAACAGGATTCAGATTTCAGAAATATTATCTTGCTATGTTCGCTTTAAGTCAGCTATCAATTTCAGCTACTTCAGAAGTATGGTCATTTCTTATTCGTGTGCTGCGTGTAATTTAACTTGACAATGCCTGTAACATGTTCGATAAAAGGACCATCTTGTAGGTTATGCCCAGTGCCTCATGATTTGAGTATAAGCCTGTCATTTACTGTTTTTGATTAGTGCATTTCAGAAAAATTACCTTGTTATGTTCTGGAAATCAGATATCAATCTCCACTTATATTCTTTTTCCAGAAAATCTAAGGATCACCCATCCATGTTCTATTTCTTGGCTTTCTTTTATTAGCTTTTCATAAAATTCCATAATTTTGTTATGTTGATAGATGTTTGCAGTGGAATTGCTTCCTCCATTTCTCTAGTTTCTCTAAAGAGTGCTATATGCAAAGTGGTCTCTGAATTTCTAACTTTGCCCTTTCTAATTTCTTTGTAGACCTTGCCTCCGGCGGATAGTGCCCAGACGACCAACAAGAAAGACCCTATTTAAAAATAAATTACTTTATAACCATTAGAGTACAGTTAGTTTATTTCTTTCCAAATTCATGTTTTTCTTATTATTAGTTTTTGTTTACATGCTTTGATGTCGAAGTTCTGTTTTGTTGGAAAAGGAACAAAAGAATCTTTAAAGGTTCTTTCGAGAACTGCAAGTGTTGTAAAATTCACCAGTTATAAATAACTAGTGCATTCTCTCTTTGGGAATTTTTTTTTTTCTTTGGCCATGGATTGAACCATCTGATTACTAGATTAATAAGTAGATGCTGTCAATTGGAGAGTGAAGCAAATAGATTGAATCATGGTGTCAAGTGGTTTATTAGTCCTTTTAAAGTTCCTTCATATTCTACTTCTTTGAGAGTTGACAAGGGGAAATTTTCATTAGAGACAGCAAAATTGCCAGAGAAGTAATAGAAAGTCATTCATTCTAGAAATTTTCATTGAATGCCAATTGGTGTTGCCTGTTACTAACTTGAAAGATTCCATTAGGAAGCTTTCTTCTTAATCTGATTCACTCTCTTATTTAACCGTCACTTTCTTCTGCATGTTTCGACTGCTTTTTTTATTGGAGAATTTGAATGTTGGTTAATCTAGTACCAAAAAAAATTTAAGGTAATTTTTAATTTAATTATCTTGAATTATTTAAGATCGAACTATTATGGATATTAATCTAATTTGAATTGAAAAATTAGAGG

mRNA sequence

ATGAAAATGAGAGATGAATCATCCTATTATTTGAATTTATTTTAAAAAATGTTTTGAAATCAAATAATAATGTGAAAAATTAGTAATAATACATTTAAATTTTACTTTTCATATTGGTATGGTTATGGCCATTGGTATTTAAGGGGGAGTTGGGTGGCGGTCAGATTGAATTTTGGAGTCTTCCTAAAGGGAAATTGTAATCTTGGTGTTGGTGGGTGTTCAGCTGAATCATGACTCAGAAATTCGGCGGTGGGTTGCGCCCTACGGGAACTCCCTCTGTTGGTTGGTCTTTTGTCGTCGTCGTCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACCACATCTACAAACCAAATCTTGATTCAGATTTCAGAAATATTATCTTGCTATGTTCGCTTTAAGTCAGCTATCAATTTCAGCTACTTCAGAAGTATGACCTTGCCTCCGGCGGATAGTGCCCAGACGACCAACAAGAAAGACCCTATTTAAAAATAAATTACTTTATAACCATTAGAGTACAGTTAGTTTATTTCTTTCCAAATTCATGTTTTTCTTATTATTAGTTTTTGTTTACATGCTTTGATGTCGAAGTTCTGTTTTGTTGGAAAAGGAACAAAAGAATCTTTAAAGGTTCTTTCGAGAACTGCAAGTGTTGTAAAATTCACCAGTTATAAATAACTAGTGCATTCTCTCTTTGGGAATTTTTTTTTTTCTTTGGCCATGGATTGAACCATCTGATTACTAGATTAATAAGTAGATGCTGTCAATTGGAGAGTGAAGCAAATAGATTGAATCATGGTGTCAAGTGGTTTATTAGTCCTTTTAAAGTTCCTTCATATTCTACTTCTTTGAGAGTTGACAAGGGGAAATTTTCATTAGAGACAGCAAAATTGCCAGAGAAGTAATAGAAAGTCATTCATTCTAGAAATTTTCATTGAATGCCAATTGGTGTTGCCTGTTACTAACTTGAAAGATTCCATTAGGAAGCTTTCTTCTTAATCTGATTCACTCTCTTATTTAACCGTCACTTTCTTCTGCATGTTTCGACTGCTTTTTTTATTGGAGAATTTGAATGTTGGTTAATCTAGTACCAAAAAAAATTTAAGGTAATTTTTAATTTAATTATCTTGAATTATTTAAGATCGAACTATTATGGATATTAATCTAATTTGAATTGAAAAATTAGAGG

Coding sequence (CDS)

ATGACTCAGAAATTCGGCGGTGGGTTGCGCCCTACGGGAACTCCCTCTGTTGGTTGGTCTTTTGTCGTCGTCGTCTCCTCGCTTCTCGCCGGCGCCTCCATTGTCCACCACATCTACAAACCAAATCTTGATTCAGATTTCAGAAATATTATCTTGCTATGTTCGCTTTAA

Protein sequence

MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLDSDFRNIILLCSL
Homology
[Close]
BLAST of Cmc09g0242641 vs. NCBI nr
Match: KAA0037665.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 2.9e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 43

[Close]
BLAST of Cmc09g0242641 vs. NCBI nr
Match: KGN51309.1 (hypothetical protein Csa_009362 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 7.1e-14
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          MTQKFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVH+I+KPNL
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNL 43

[Close]
BLAST of Cmc09g0242641 vs. NCBI nr
Match: KAG7016236.1 (hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          M +KFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVH+IYKPNL
Sbjct: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNL 43

[Close]
BLAST of Cmc09g0242641 vs. NCBI nr
Match: XP_023514673.1 (uncharacterized protein LOC111778900 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLDS 46
          M QKFGG L PTGTPSVGWSFVVV+SSLLAGAS+VH+IYKPNL+S
Sbjct: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNLNS 45

[Close]
BLAST of Cmc09g0242641 vs. NCBI nr
Match: KAG6602373.1 (hypothetical protein SDJN03_07606, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNLDS 46
          M QKFGG L PTGTPSVGWSFVVV+SSLLAGAS+VH+IYKPNL+S
Sbjct: 1  MAQKFGGRLLPTGTPSVGWSFVVVISSLLAGASVVHNIYKPNLNS 45

[Close]
BLAST of Cmc09g0242641 vs. ExPASy TrEMBL
Match: A0A5A7T878 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00480 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 43

[Close]
BLAST of Cmc09g0242641 vs. ExPASy TrEMBL
Match: A0A0A0KQX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 40/43 (93.02%), Postives = 43/43 (100.00%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          MTQKFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVH+I+KPNL
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNL 43

[Close]
BLAST of Cmc09g0242641 vs. ExPASy TrEMBL
Match: A0A6A4PT41 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0073451 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          M +KFGGG +PTGTPS+GWS VVVV SLLAGAS+VH+IYKPNL
Sbjct: 1  MNKKFGGGRKPTGTPSLGWSCVVVVCSLLAGASVVHNIYKPNL 43

[Close]
BLAST of Cmc09g0242641 vs. ExPASy TrEMBL
Match: A0A4U5QZK5 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000016330 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-10
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          M++KFG G +PTGTPS+GWSFVV + SLLAGAS+VH IYKPNL
Sbjct: 1  MSKKFGAGKQPTGTPSLGWSFVVAIVSLLAGASVVHSIYKPNL 43

[Close]
BLAST of Cmc09g0242641 vs. ExPASy TrEMBL
Match: A0A151TD64 (Actin-11 OS=Cajanus cajan OX=3821 GN=KK1_019588 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-10
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          M +KFGGG +PTGTPS+ WS VVVV SLLAGAS+VH+IYKPNL
Sbjct: 1  MNRKFGGGKKPTGTPSLAWSCVVVVFSLLAGASVVHNIYKPNL 43

[Close]
BLAST of Cmc09g0242641 vs. TAIR 10
Match: AT4G26055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-11
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          M  KF GG +PTGTPS+ WS VVVV+SLLAGAS+VH+IYKP+L
Sbjct: 1  MNNKF-GGKKPTGTPSLAWSTVVVVASLLAGASVVHNIYKPDL 42

[Close]
BLAST of Cmc09g0242641 vs. TAIR 10
Match: AT5G57080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26055.1); Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-08
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 8  GLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL 44
          G  PTGTPS+  S +VVV+SLLAGAS+VH+IYKP+L
Sbjct: 7  GKLPTGTPSLAMSTLVVVASLLAGASVVHNIYKPDL 42

The following BLAST results are available for this feature:
BLAST of Cmc09g0242641 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037665.12.9e-15100.00putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative t... [more]
KGN51309.17.1e-1493.02hypothetical protein Csa_009362 [Cucumis sativus][more]
KAG7016236.12.1e-1393.02hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023514673.11.8e-1284.44uncharacterized protein LOC111778900 [Cucurbita pepo subsp. pepo][more]
KAG6602373.11.8e-1284.44hypothetical protein SDJN03_07606, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Cmc09g0242641 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc09g0242641 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T8781.4e-15100.00Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0KQX53.5e-1493.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1[more]
A0A6A4PT411.0e-1079.07Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0073451 PE=4 SV=1[more]
A0A4U5QZK55.2e-1074.42Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000016330 PE=4 SV=1[more]
A0A151TD646.7e-1076.74Actin-11 OS=Cajanus cajan OX=3821 GN=KK1_019588 PE=3 SV=1[more]
BLAST of Cmc09g0242641 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G26055.13.5e-1172.09unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G57080.18.2e-0869.44unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027858Protein BRAWNINPFAMPF14990DUF4516coord: 11..44
e-value: 3.9E-13
score: 48.9
IPR027858Protein BRAWNINPANTHERPTHR28492HYPOTHETICAL PROTEIN LOC691921coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc09g0242641.1Cmc09g0242641.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034551 mitochondrial respiratory chain complex III assembly
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding