Cmc09g0242601 (gene) Melon (Charmono) v1.1

Overview
NameCmc09g0242601
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCMiso1.1chr09: 4881243 .. 4883354 (-)
RNA-Seq ExpressionCmc09g0242601
SyntenyCmc09g0242601
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATCATTTTAAAAAAGTTAATGTTTAGATATTCAAATATAACATAATGTTTTAGATGTGATGCAATGGATGCGAAAGTCCTCTGCGATTTCTCAAATCCAAATAATGGTGTCTCCTTATCTCTTTAAACTAATCAAACCCAAAAAGGGAAAAATTTGAACTAGTTGAAGGTGACAAATCAATACGACAAATTATGATTCACTAGAAATTCTTCATTTCTGAGGAAAATCGATAATCCCATTTGGATAAAAATGCCTGCAAAGAAGTGGAACCATACAAATGAAAGCTTCCATTTTATTCTAGTGGTGGTGTTGGTGGTGTACTTGATCATGATGACTCGTGGTGCGATAAAGCTCACTGAAAAGGGCCCCTCTTTCTCGACATGATTAATGCCATGGAGTTCGGGGAATCACAAAAAGCTAAGTCTTTTTTCTTTCTCTCTTTTTTACTTCTCTCTTTAATTTCTTAGACCACAAACTCATCGTGGTGCTGCAGGATTTTGACCTCACTGTTTTAATTGTACCACCCCTCACATGCATCAAGTGTTTGATATAATGCCACAGAAAGAAGAAAAAGTAAAGTAGAAAATTCGTTGGGTTTTTTTTTAATTTCATTAATTTGTCTGAATTATGAAATGAATGGGATGTTTTGTATGTTTGAGTGAATCAATTGCTGATTCGACACTTCATGGTGTATGAAAACAATTTTGTTCTGGGACTTTGTGGATTTCAGTTTTAGCATCTTCTGGGATTGAATCACCTGCAATGTAATTCATAACTAACTAGAGAACTTTAAGGAACTACTAAAGAAGATGAACGAGGAAGAACAGAATTTGGAGATGAAGATTAGGAAAGTGAGTAAAATGGGCAAAAGGGCAGGGATTTTATGGTCTATAATGCAATTCTTCATAATTTATATGTAAAAATTCCATGTTTTTGAAGAGTGGATGCTCTTCCATTTCAACTTTCACAAAACAAGCTGTGTATACAATCACGACAATAACAGATATAGACACAGAGGAAATGTATACTGTCAATATAAGAAGTGATCTTACTAGTCTTATTCATTCTGCAGTACAAATGTTCATCTTGGAAAAAAGGAAAGTGAAAGAAAAAAAAAAAAACAGAAGAGTGTGAACAAATAAACCAATTACCAATTACCAATCAATCCTTTTCTGCTTAGCTTGGCTAATATTGATGATGGAGGAAAATGAATAACAATATAATTAGAGGAGAGGCTAATAAGCCATTGCAACAGGAGGAACAGCAAAGCTGATGGTTCTCTGATTAGGCATAGCAAGCATTGCAGTGTGATCCAAGAAATCTTTAAGAGCAACAACAGATTCCAAAATAGTTCTCAAATCATCGGTACATGAAAACCCAAAACACCCTTCTCTTCTAACTGCATAAACATAAAAAGTTATGCAGCCTTTTCTGAATTTGAACCGAGCCATCTCACACCCACTTAGCCCTCTAATCATCTTCTTGTTCACTTCACCTAGAGGGATTTCTGTTGGCCAAACACGATCTATGGCTGCCTTCATGGTTTCATTTTCAAACACAAAGAGAAGAACTTTGGATTTCCTGGTGCCTAGGCCTAAAGTGAGGGTGTGCCAAGCATGGTGCGCAAGGATTGTGAAGTTTGTAGGAATGAAAGCTGTGGCTGATGGGAATGGCGGTTTGTGGCCGGAATTTCTGGTGGTAGCCGGAAAAGAAAGGAGCTGGAGGAGCTCTAAAGGCCTAGCTCGCCGGATTGTGAAGGATTTAACAATGAATTGGCCACCAAATCTAAGACCCTTTACATCAGAGCATGGCTTGAAAGAGAAATCAGAGGCTGATTTTGTAGTTTGGTCATTTGGGTGCTGGTGTTTTTGCTTCTTGTTGTGCTTCTTGCTCTTCTTTGTCTCTGTTTCTTCCATGTCTTGTTCTTCTTTGTGCACTTCTTTCTTCTCCTTTGTGGTGATGGGTTTTGTTGTTTCTGTTGATTCCATAATTAAAAACCCAATCTAATTCTACTTTTCATGGTACAATCAACTGTGTGATGTGTCTCCTTTATTAGCCTTCCTTTGTTTCAATTCAAGTTCACTCTTCATTTTCCCCAAATTAAGCCAA

mRNA sequence

TTTATCATTTTAAAAAAGTTAATGTTTAGATATTCAAATATAACATAATGTTTTAGATGTGATGCAATGGATGCGAAAGTCCTCTGCGATTTCTCAAATCCAAATAATGGTGTCTCCTTATCTCTTTAAACTAATCAAACCCAAAAAGGGAAAAATTTGAACTAGTTGAAGGTGACAAATCAATACGACAAATTATGATTCACTAGAAATTCTTCATTTCTGAGGAAAATCGATAATCCCATTTGGATAAAAATGCCTGCAAAGAAGTGGAACCATACAAATGAAAGCTTCCATTTTATTCTAGTGGTGGTGTTGGTGGTGTACTTGATCATGATGACTCGTGGTGCGATAAAGCTCACTGAAAAGGGCCCCTCTTTCTCGACATGATTAATGCCATGGAGTTCGGGGAATCACAAAAAGCTAAGTCTTTTTTCTTTCTCTCTTTTTTACTTCTCTCTTTAATTTCTTAGACCACAAACTCATCGTGGTGCTGCAGGATTTTGACCTCACTGTTTTAATTGTACCACCCCTCACATGCATCAAGTGTTTGATATAATGCCACAGAAAGAAGAAAAAGTAAAGTAGAAAATTCGTTGGGTTTTTTTTTAATTTCATTAATTTGTCTGAATTATGAAATGAATGGGATGTTTTGTATGTTTGAGTGAATCAATTGCTGATTCGACACTTCATGGTGTATGAAAACAATTTTGTTCTGGGACTTTGTGGATTTCAGTTTTAGCATCTTCTGGGATTGAATCACCTGCAATGTAATTCATAACTAACTAGAGAACTTTAAGGAACTACTAAAGAAGATGAACGAGGAAGAACAGAATTTGGAGATGAAGATTAGGAAAGTGAGTAAAATGGGCAAAAGGGCAGGGATTTTATGGTCTATAATGCAATTCTTCATAATTTATATGTAAAAATTCCATGTTTTTGAAGAGTGGATGCTCTTCCATTTCAACTTTCACAAAACAAGCTGTGTATACAATCACGACAATAACAGATATAGACACAGAGGAAATGTATACTGTCAATATAAGAAGTGATCTTACTAGTCTTATTCATTCTGCAGTACAAATGTTCATCTTGGAAAAAAGGAAAGTGAAAGAAAAAAAAAAAAACAGAAGAGTGTGAACAAATAAACCAATTACCAATTACCAATCAATCCTTTTCTGCTTAGCTTGGCTAATATTGATGATGGAGGAAAATGAATAACAATATAATTAGAGGAGAGGCTAATAAGCCATTGCAACAGGAGGAACAGCAAAGCTGATGGTTCTCTGATTAGGCATAGCAAGCATTGCAGTGTGATCCAAGAAATCTTTAAGAGCAACAACAGATTCCAAAATAGTTCTCAAATCATCGGGATTTCTGTTGGCCAAACACGATCTATGGCTGCCTTCATGGTTTCATTTTCAAACACAAAGAGAAGAACTTTGGATTTCCTGGTGCCTAGGCCTAAAGTGAGGGTGTGCCAAGCATGGTGCGCAAGGATTGTGAAGTTTGTAGGAATGAAAGCTGTGGCTGATGGGAATGGCGGTTTGTGGCCGGAATTTCTGGTGGTAGCCGGAAAAGAAAGGAGCTGGAGGAGCTCTAAAGGCCTAGCTCGCCGGATTGTGAAGGATTTAACAATGAATTGGCCACCAAATCTAAGACCCTTTACATCAGAGCATGGCTTGAAAGAGAAATCAGAGGCTGATTTTGTAGTTTGGTCATTTGGGTGCTGGTGTTTTTGCTTCTTGTTGTGCTTCTTGCTCTTCTTTGTCTCTGTTTCTTCCATGTCTTGTTCTTCTTTGTGCACTTCTTTCTTCTCCTTTGTGGTGATGGGTTTTGTTGTTTCTGTTGATTCCATAATTAAAAACCCAATCTAATTCTACTTTTCATGGTACAATCAACTGTGTGATGTGTCTCCTTTATTAGCCTTCCTTTGTTTCAATTCAAGTTCACTCTTCATTTTCCCCAAATTAAGCCAA

Coding sequence (CDS)

ATGGCTGCCTTCATGGTTTCATTTTCAAACACAAAGAGAAGAACTTTGGATTTCCTGGTGCCTAGGCCTAAAGTGAGGGTGTGCCAAGCATGGTGCGCAAGGATTGTGAAGTTTGTAGGAATGAAAGCTGTGGCTGATGGGAATGGCGGTTTGTGGCCGGAATTTCTGGTGGTAGCCGGAAAAGAAAGGAGCTGGAGGAGCTCTAAAGGCCTAGCTCGCCGGATTGTGAAGGATTTAACAATGAATTGGCCACCAAATCTAAGACCCTTTACATCAGAGCATGGCTTGAAAGAGAAATCAGAGGCTGATTTTGTAGTTTGGTCATTTGGGTGCTGGTGTTTTTGCTTCTTGTTGTGCTTCTTGCTCTTCTTTGTCTCTGTTTCTTCCATGTCTTGTTCTTCTTTGTGCACTTCTTTCTTCTCCTTTGTGGTGATGGGTTTTGTTGTTTCTGTTGATTCCATAATTAAAAACCCAATCTAA

Protein sequence

MAAFMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGMKAVADGNGGLWPEFLVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKSEADFVVWSFGCWCFCFLLCFLLFFVSVSSMSCSSLCTSFFSFVVMGFVVSVDSIIKNPI
Homology
[Close]
BLAST of Cmc09g0242601 vs. NCBI nr
Match: CAE6076342.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-25
Identity = 65/98 (66.33%), Postives = 71/98 (72.45%), Query Frame = 0 

Query: 4   FMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGMKAVADGNGGLWPEFLVVAGKER 63
           F+ S SNT   TLDFLVPRP V VC AWCARIVKFVG  A  + +GG   E     G+ER
Sbjct: 18  FIASVSNTNTTTLDFLVPRPSVSVCHAWCARIVKFVGRYAAVERSGGDDEE-----GRER 77

Query: 64  SWRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKSE 102
           S+RSS  LARRIV DLT+ WPPNLRPFTSE GLKE SE
Sbjct: 78  SFRSSSVLARRIVNDLTIIWPPNLRPFTSEVGLKEMSE 110

[Close]
BLAST of Cmc09g0242601 vs. NCBI nr
Match: KAF9668561.1 (hypothetical protein SADUNF_Sadunf14G0016300 [Salix dunnii])

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-14
Identity = 50/87 (57.47%), Postives = 57/87 (65.52%), Query Frame = 0 

Query: 4   FMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGMKAVADGNGGLWP-EFLVVAGKE 63
           FM S   T + TLD LVP P V+VCQAW A+IV+FVG KAV  GN  L    FL + G E
Sbjct: 839 FMDSDLKTNKSTLDLLVPGPSVKVCQAWYAKIVRFVGRKAVVKGNRILLLFFFLSLGGYE 898

Query: 64  RSWRSSKGLARRIVKDLTMNWPPNLRP 90
            ++RSS GLAR IVKD TMN P N  P
Sbjct: 899 STFRSSSGLARWIVKDFTMNCPQNEDP 925

[Close]
BLAST of Cmc09g0242601 vs. NCBI nr
Match: KAE8679465.1 (Pentatricopeptide repeat-containing protein [Hibiscus syriacus])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-11
Identity = 51/96 (53.12%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 35  IVKFVGMKAVADGNGGLWPEFLVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEH 94
           +VKFVG KAV  G G L  + L   G   S  SS GLAR +V DLTMNWPPNLRPFTS  
Sbjct: 1   MVKFVGKKAVVVGKGSLLLDLLNNGGDSSSLSSSSGLARLMVNDLTMNWPPNLRPFTSLL 60

Query: 95  GLKEKSEADFVVWSFGCWCF----CFLLCFLLFFVS 127
           GLKEKS+        GC C        L  LLF VS
Sbjct: 61  GLKEKSD------DGGCSCLIIGVLMFLLLLLFLVS 90

[Close]
BLAST of Cmc09g0242601 vs. ExPASy TrEMBL
Match: A0A0A0KQX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517125 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 41  MKAVADGNGGLWPEFLVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKS 100
           MKAVADGNGGLWPEFLVVAGKERS RSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKS
Sbjct: 1   MKAVADGNGGLWPEFLVVAGKERSRRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKS 60

Query: 101 EADFVVWSFGCWCFCFLLCFLLFFVSVSSMSCSSLCTSFFSFVVMGFVVSVDSIIKNPI 160
             DFVVWSFGCWCFCFLL FLLFFVSVSS+SCSS+CTSFFSFVVMGFVVSVDSIIK PI
Sbjct: 61  --DFVVWSFGCWCFCFLLFFLLFFVSVSSISCSSMCTSFFSFVVMGFVVSVDSIIKRPI 117

[Close]
BLAST of Cmc09g0242601 vs. ExPASy TrEMBL
Match: A0A0A9VLF4 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.3e-13
Identity = 50/98 (51.02%), Postives = 55/98 (56.12%), Query Frame = 0 

Query: 2   AAFMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGMKAV---ADGNGGLWPEFLVV 61
           AAFM + S TK   L+FLVPRP VRVC AWCAR+ K VGM AV   A+ +G   P   V 
Sbjct: 20  AAFMAADSKTKTAALEFLVPRPSVRVCHAWCARMAKLVGMYAVVVGANDSGPPSPPAAVG 79

Query: 62  AG-KERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEHG 96
           AG   R   SS G ARR V        P  RP TS HG
Sbjct: 80  AGAARRRCGSSSGAARRTVSARVTICAPKRRPLTSAHG 117

[Close]
BLAST of Cmc09g0242601 vs. ExPASy TrEMBL
Match: A0A6A2YAD6 (Pentatricopeptide repeat-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111402pilonHSYRG01509 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-12
Identity = 51/96 (53.12%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 35  IVKFVGMKAVADGNGGLWPEFLVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEH 94
           +VKFVG KAV  G G L  + L   G   S  SS GLAR +V DLTMNWPPNLRPFTS  
Sbjct: 1   MVKFVGKKAVVVGKGSLLLDLLNNGGDSSSLSSSSGLARLMVNDLTMNWPPNLRPFTSLL 60

Query: 95  GLKEKSEADFVVWSFGCWCF----CFLLCFLLFFVS 127
           GLKEKS+        GC C        L  LLF VS
Sbjct: 61  GLKEKSD------DGGCSCLIIGVLMFLLLLLFLVS 90

[Close]
BLAST of Cmc09g0242601 vs. ExPASy TrEMBL
Match: A0A0A9MTX3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.1e-08
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 2  AAFMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGM 42
          AAFM+S SNTK  TLDFLVPRP V VC AWCAR+VK VGM
Sbjct: 40 AAFMLSDSNTKSTTLDFLVPRPSVSVCHAWCARMVKLVGM 79

[Close]
BLAST of Cmc09g0242601 vs. ExPASy TrEMBL
Match: A0A0A9VGE2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-06
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 2  AAFMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGM 42
          AAFM + S TK   L+FLVPRP VRVC AWCAR+ K VGM
Sbjct: 20 AAFMAADSKTKTAALEFLVPRPSVRVCHAWCARMAKLVGM 59

The following BLAST results are available for this feature:
BLAST of Cmc09g0242601 vs. NCBI nr
Match NameE-valueIdentityDescription
CAE6076342.12.3e-2566.33unnamed protein product [Arabidopsis arenosa][more]
KAF9668561.15.3e-1457.47hypothetical protein SADUNF_Sadunf14G0016300 [Salix dunnii][more]
KAE8679465.11.5e-1153.13Pentatricopeptide repeat-containing protein [Hibiscus syriacus][more]
BLAST of Cmc09g0242601 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc09g0242601 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQX92.0e-5494.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517125 PE=4 SV=1[more]
A0A0A9VLF48.3e-1351.02Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A6A2YAD67.0e-1253.13Pentatricopeptide repeat-containing protein OS=Hibiscus syriacus OX=106335 GN=F3... [more]
A0A0A9MTX38.1e-0877.50Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9VGE27.5e-0667.50Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of Cmc09g0242601 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc09g0242601.1Cmc09g0242601.1mRNA