Cmc09g0242201 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0242201
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr09: 4545278 .. 4545616 (-)
RNA-Seq Expression	Cmc09g0242201
Synteny	Cmc09g0242201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACGTAATAATTATCCTTTACCCCACATCGACGACTTGATTGACCAATTAAGAGGAGCAACAATGTTCTATAAGATTGATTTGAGATCAGGATACCATCAGTTAAAGGTTAGGGAGTCAGACATCCCTAAGACATCATTCAAAACAAGGTATAGACACTATGAGTTTCTAGTTATGCTATTTAGTTTAACGAATGCACCAACAGTTTTCATGGATCTCATGAATAGGATCTTCCATCAATATTTATATCAGTTCGTGATAGTGTTCATTGATGACATACTAGTTTATTCGATTGACGGGAAAACCCACGAAGAACATCTAAAGATTGTTTTATGA

mRNA sequence

ATGATACGTAATAATTATCCTTTACCCCACATCGACGACTTGATTGACCAATTAAGAGGAGCAACAATGTTCTATAAGATTGATTTGAGATCAGGATACCATCAGTTAAAGGTTAGGGAGTCAGACATCCCTAAGACATCATTCAAAACAAGGTATAGACACTATGAGTTTCTAGTTATGCTATTTAGTTTAACGAATGCACCAACAGTTTTCATGGATCTCATGAATAGGATCTTCCATCAATATTTATATCAGTTCGTGATAGTGTTCATTGATGACATACTAGTTTATTCGATTGACGGGAAAACCCACGAAGAACATCTAAAGATTGTTTTATGA

Coding sequence (CDS)

ATGATACGTAATAATTATCCTTTACCCCACATCGACGACTTGATTGACCAATTAAGAGGAGCAACAATGTTCTATAAGATTGATTTGAGATCAGGATACCATCAGTTAAAGGTTAGGGAGTCAGACATCCCTAAGACATCATTCAAAACAAGGTATAGACACTATGAGTTTCTAGTTATGCTATTTAGTTTAACGAATGCACCAACAGTTTTCATGGATCTCATGAATAGGATCTTCCATCAATATTTATATCAGTTCGTGATAGTGTTCATTGATGACATACTAGTTTATTCGATTGACGGGAAAACCCACGAAGAACATCTAAAGATTGTTTTATGA

Protein sequence

MIRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVMLFSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL

Homology

[Close]

BLAST of Cmc09g0242201 vs. NCBI nr
Match: TYK22952.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           IRN YPLPHIDDL DQLRGAT+F KIDLRSGYHQLKVRESDI KT+FKTRY HYEF VM 
Sbjct: 473 IRNKYPLPHIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTTFKTRYGHYEFRVMP 532

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F LTNAP +FMDLMNRIFHQYL QFVIVFIDDILVYS+D ++HEEHL+IVL
Sbjct: 533 FGLTNAPAIFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVL 583

[Close]

BLAST of Cmc09g0242201 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           IRN YPLPHIDDL DQLRGA +F KIDLRSGYHQL+VRESDIPKT+F+ RY HYEFLVM 
Sbjct: 787 IRNKYPLPHIDDLFDQLRGAVVFSKIDLRSGYHQLRVRESDIPKTTFRMRYGHYEFLVMP 846

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F LTNAP VFMDLMN+IFHQYL+QFVIVFIDDILVYS+D K HEEHL+IVL
Sbjct: 847 FGLTNAPAVFMDLMNKIFHQYLHQFVIVFIDDILVYSMDKKAHEEHLRIVL 897

[Close]

BLAST of Cmc09g0242201 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 2.4e-45
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           IRN YPLPHIDDL DQLRGA +F KIDLRSGYHQL+VRESDIPKT+F+ RY HYEFLVM 
Sbjct: 787 IRNKYPLPHIDDLFDQLRGAVVFSKIDLRSGYHQLRVRESDIPKTTFRMRYGHYEFLVMP 846

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F LTNAP VFMDLMN+IFHQYL+QFVIVFIDDILVYS+D K HEEHL+IVL
Sbjct: 847 FGLTNAPAVFMDLMNKIFHQYLHQFVIVFIDDILVYSMDKKAHEEHLRIVL 897

[Close]

BLAST of Cmc09g0242201 vs. NCBI nr
Match: KAA0037514.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 4.1e-45
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MIRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVM 60
           MIRN YPLP IDDL DQLRG  +F KIDLRSGYHQLKVRESDIPKT+F+TRY HYEFLVM
Sbjct: 247 MIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRTRYGHYEFLVM 306

Query: 61  LFSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
            F LTNAP VFMDLMNRIFHQYLYQFVIVFID ILVYS+D K HEEHL+I L
Sbjct: 307 SFGLTNAPAVFMDLMNRIFHQYLYQFVIVFIDVILVYSMDKKAHEEHLRIFL 358

[Close]

BLAST of Cmc09g0242201 vs. NCBI nr
Match: TYK01989.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 4.1e-45
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MIRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVM 60
           MIRN YPLP IDDL DQLRG  +F KIDLRSGYHQLKVRESDIPKT+F+TRY HYEFLVM
Sbjct: 247 MIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRTRYGHYEFLVM 306

Query: 61  LFSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
            F LTNAP VFMDLMNRIFHQYLYQFVIVFID ILVYS+D K HEEHL+I L
Sbjct: 307 SFGLTNAPAVFMDLMNRIFHQYLYQFVIVFIDIILVYSMDKKAHEEHLRIFL 358

[Close]

BLAST of Cmc09g0242201 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-26
Identity = 54/108 (50.00%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           I+N YP+P +DDL D+L  AT F K+DLRSGY Q+++ + D PKT+  TRY  +EF VM 
Sbjct: 20  IKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMP 79

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLK 110
           F LTNA   F +LMN + ++YL  FV+V++DD++VY+I   +  EH+K
Sbjct: 80  FGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIK 127

[Close]

BLAST of Cmc09g0242201 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           I + YP+P I+  +  L  A  F  +DL SG+HQ+ ++ESDIPKT+F T    YEFL + 
Sbjct: 192 IPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLP 251

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F L NAP +F  +++ I  +++ +   V+IDDI+V+S D  TH ++L++VL
Sbjct: 252 FGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVL 302

[Close]

BLAST of Cmc09g0242201 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-17
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           I + YP+P++D+++ +L     F  IDL  G+HQ+++ E  I KT+F T+  HYE+L M 
Sbjct: 275 IPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMP 334

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIV 112
           F L NAP  F   MN I    L +  +V++DDI+++S     H   +++V
Sbjct: 335 FGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

[Close]

BLAST of Cmc09g0242201 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-16
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           I + +PLP ID+L+ ++  A +F  +DL SGYHQ+ +   D  KT+F T    YE+ VM 
Sbjct: 660 ISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMP 719

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F L NAP+ F   M   F     +FV V++DDIL++S   + H +HL  VL
Sbjct: 720 FGLVNAPSTFARYMADTFRD--LRFVNVYLDDILIFSESPEEHWKHLDTVL 768

[Close]

BLAST of Cmc09g0242201 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-16
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           I + +PLP ID+L+ ++  A +F  +DL SGYHQ+ +   D  KT+F T    YE+ VM 
Sbjct: 686 ISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMP 745

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F L NAP+ F   M   F     +FV V++DDIL++S   + H +HL  VL
Sbjct: 746 FGLVNAPSTFARYMADTFRD--LRFVNVYLDDILIFSESPEEHWKHLDTVL 794

[Close]

BLAST of Cmc09g0242201 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           IRN YPLPHIDDL DQLRGA +F KIDLRSGYHQL+VRESDIPKT+F+ RY HYEFLVM 
Sbjct: 787 IRNKYPLPHIDDLFDQLRGAVVFSKIDLRSGYHQLRVRESDIPKTTFRMRYGHYEFLVMP 846

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F LTNAP VFMDLMN+IFHQYL+QFVIVFIDDILVYS+D K HEEHL+IVL
Sbjct: 847 FGLTNAPAVFMDLMNKIFHQYLHQFVIVFIDDILVYSMDKKAHEEHLRIVL 897

[Close]

BLAST of Cmc09g0242201 vs. ExPASy TrEMBL
Match: A0A5D3DHC6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00380 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           IRN YPLPHIDDL DQLRGAT+F KIDLRSGYHQLKVRESDI KT+FKTRY HYEF VM 
Sbjct: 473 IRNKYPLPHIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTTFKTRYGHYEFRVMP 532

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F LTNAP +FMDLMNRIFHQYL QFVIVFIDDILVYS+D ++HEEHL+IVL
Sbjct: 533 FGLTNAPAIFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVL 583

[Close]

BLAST of Cmc09g0242201 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           IRN YPLPHIDDL DQLRGA +F KIDLRSGYHQL+VRESDIPKT+F+ RY HYEFLVM 
Sbjct: 787 IRNKYPLPHIDDLFDQLRGAVVFSKIDLRSGYHQLRVRESDIPKTTFRMRYGHYEFLVMP 846

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F LTNAP VFMDLMN+IFHQYL+QFVIVFIDDILVYS+D K HEEHL+IVL
Sbjct: 847 FGLTNAPAVFMDLMNKIFHQYLHQFVIVFIDDILVYSMDKKAHEEHLRIVL 897

[Close]

BLAST of Cmc09g0242201 vs. ExPASy TrEMBL
Match: A0A5A7SRT9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G00220 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 91/111 (81.98%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 2   IRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVML 61
           IRN YPLPHIDDL DQLRGA +F KIDLRSGYH+LKVRESDI KT+F+TRY HYEF VM 
Sbjct: 515 IRNKYPLPHIDDLFDQLRGAALFSKIDLRSGYHELKVRESDIAKTTFRTRYGHYEFRVMP 574

Query: 62  FSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
           F LTNAP VFMDLMNRIFHQYLYQFVIVFIDDILVYS+D ++HEEH++IVL
Sbjct: 575 FGLTNAPAVFMDLMNRIFHQYLYQFVIVFIDDILVYSVDRESHEEHMRIVL 625

[Close]

BLAST of Cmc09g0242201 vs. ExPASy TrEMBL
Match: A0A5D3BV68 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001010 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 93/112 (83.04%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MIRNNYPLPHIDDLIDQLRGATMFYKIDLRSGYHQLKVRESDIPKTSFKTRYRHYEFLVM 60
           MIRN YPLP IDDL DQLRG  +F KIDLRSGYHQLKVRESDIPKT+F+TRY HYEFLVM
Sbjct: 247 MIRNKYPLPRIDDLFDQLRGVVVFSKIDLRSGYHQLKVRESDIPKTTFRTRYGHYEFLVM 306

Query: 61  LFSLTNAPTVFMDLMNRIFHQYLYQFVIVFIDDILVYSIDGKTHEEHLKIVL 113
            F LTNAP VFMDLMNRIFHQYLYQFVIVFID ILVYS+D K HEEHL+I L
Sbjct: 307 SFGLTNAPAVFMDLMNRIFHQYLYQFVIVFIDIILVYSMDKKAHEEHLRIFL 358

The following BLAST results are available for this feature:

BLAST of Cmc09g0242201 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22952.1	2.4e-45	83.78	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0042035.1	2.4e-45	82.88	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK17971.1	2.4e-45	82.88	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0037514.1	4.1e-45	83.04	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01989.1	4.1e-45	83.04	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0242201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31843	4.4e-26	50.00	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
Q8I7P9	2.4e-19	42.34	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	6.4e-17	37.27	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	3.2e-16	41.44	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.2e-16	41.44	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc09g0242201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKT0	1.2e-45	82.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3DHC6	1.2e-45	83.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5D3D150	1.2e-45	82.88	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A5A7SRT9	2.0e-45	81.98	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold47...	[more]
A0A5D3BV68	2.0e-45	83.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold80...	[more]

BLAST of Cmc09g0242201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 2..66 e-value: 1.4E-38 score: 134.3
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..92
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 2..92
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..112 e-value: 4.42563E-45 score: 141.964
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 11..111 e-value: 3.1E-13 score: 49.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 6..112 e-value: 1.4E-38 score: 134.3
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0242201.1	Cmc09g0242201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding