Cmc09g0241661 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0241661
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr09: 3845171 .. 3845755 (-)
RNA-Seq Expression	Cmc09g0241661
Synteny	Cmc09g0241661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCCTCAAACCATCCATTTTACTGCCGTACTACGTATCCTTCGCTATATCAAGGGGACTTTGGGGCATGAACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATTTGGCTATTCTGATGCAGATTGGGCTGAGGATCCCACTGATCGGCGTTCTACAACAGGCTACTGCTTCTACTTAGGCGATTCTCTCATTTCTTGGCGTAGTAATAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATACTACCGCTGAACTGTTATGGCTTCGTTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAGGGTTCCACTCTCCTCCATTGTGATAATCGTAGTGCCATCCAAATTGCCCACAATGATATTTTCCATGAGCGTACAAAGCACATCGAAAATGATTGTCACTTCATTTTTCATCATCTCTTGAGTAACACACTTCTTTTGCAACCTGTCTCCACCACTGAGCAACCAGATGATATCTTCACCAAAGCCTTACCATTTACTCGCTTCAATCAATTGCGTACAAAACTCAAGCTGACAGCTACTCTATCACCTTGA

mRNA sequence

ATGGCTGCTCCTCAAACCATCCATTTTACTGCCGTACTACGTATCCTTCGCTATATCAAGGGGACTTTGGGGCATGAACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATTTGGCTATTCTGATGCAGATTGGGCTGAGGATCCCACTGATCGGCGTTCTACAACAGGCTACTGCTTCTACTTAGGCGATTCTCTCATTTCTTGGCGTAGTAATAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATACTACCGCTGAACTGTTATGGCTTCGTTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAGGGTTCCACTCTCCTCCATTGTGATAATCGTAGTGCCATCCAAATTGCCCACAATGATATTTTCCATGAGCGTACAAAGCACATCGAAAATGATTGTCACTTCATTTTTCATCATCTCTTGAGTAACACACTTCTTTTGCAACCTGTCTCCACCACTGAGCAACCAGATGATATCTTCACCAAAGCCTTACCATTTACTCGCTTCAATCAATTGCGTACAAAACTCAAGCTGACAGCTACTCTATCACCTTGA

Coding sequence (CDS)

ATGGCTGCTCCTCAAACCATCCATTTTACTGCCGTACTACGTATCCTTCGCTATATCAAGGGGACTTTGGGGCATGAACTTCAGTTTTCTTCTCAATCCTCTCTTGTATTATTTGGCTATTCTGATGCAGATTGGGCTGAGGATCCCACTGATCGGCGTTCTACAACAGGCTACTGCTTCTACTTAGGCGATTCTCTCATTTCTTGGCGTAGTAATAAACAAAGTGTTGTCTCTCGTTCTAGTACTGAATCAGAATATCGTGCTCTTGCTGATACTACCGCTGAACTGTTATGGCTTCGTTGGCTTCTTGCTGATATGGGTGTTCCCCAGCAGGGTTCCACTCTCCTCCATTGTGATAATCGTAGTGCCATCCAAATTGCCCACAATGATATTTTCCATGAGCGTACAAAGCACATCGAAAATGATTGTCACTTCATTTTTCATCATCTCTTGAGTAACACACTTCTTTTGCAACCTGTCTCCACCACTGAGCAACCAGATGATATCTTCACCAAAGCCTTACCATTTACTCGCTTCAATCAATTGCGTACAAAACTCAAGCTGACAGCTACTCTATCACCTTGA

Protein sequence

MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCFYLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDNRSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFNQLRTKLKLTATLSP

Homology

[Close]

BLAST of Cmc09g0241661 vs. NCBI nr
Match: XP_016903443.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo])

HSP 1 Score: 367.5 bits (942), Expect = 7.3e-98
Identity = 181/194 (93.30%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           MA P+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVL GYSDADWA DPTDRRSTTGYCF
Sbjct: 228 MAVPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 287

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
           YLGDSLISWRS KQSVVSRSST+SEYRALADTTAELLWLRWLLADMGVPQQG TLL+CDN
Sbjct: 288 YLGDSLISWRSKKQSVVSRSSTKSEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDN 347

Query: 121 RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
           RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALPFTRFN
Sbjct: 348 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPFTRFN 407

Query: 181 QLRTKLKLTATLSP 195
           QLRTKLKLTATL P
Sbjct: 408 QLRTKLKLTATLPP 421

[Close]

BLAST of Cmc09g0241661 vs. NCBI nr
Match: KAA0057482.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 365.9 bits (938), Expect = 2.1e-97
Identity = 181/194 (93.30%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           MAAP+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVL GYSDADW  DPTDRRSTTGYCF
Sbjct: 582 MAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWVGDPTDRRSTTGYCF 641

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
           YLGDSLISWRS KQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQG TLL+CDN
Sbjct: 642 YLGDSLISWRSKKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDN 701

Query: 121 RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
           RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALP TRFN
Sbjct: 702 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPSTRFN 761

Query: 181 QLRTKLKLTATLSP 195
           QLRTKLKLTATL P
Sbjct: 762 QLRTKLKLTATLPP 775

[Close]

BLAST of Cmc09g0241661 vs. NCBI nr
Match: KAA0050089.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 365.9 bits (938), Expect = 2.1e-97
Identity = 180/194 (92.78%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           MAAP+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVLFGYSDADWA DPTDRRSTTGYCF
Sbjct: 483 MAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFGYSDADWAGDPTDRRSTTGYCF 542

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
           YLGDSLISWRS KQSVVS SSTESEYR LADTTAELLWLRWL+ADMGVPQQ  TLLHCDN
Sbjct: 543 YLGDSLISWRSKKQSVVSHSSTESEYRTLADTTAELLWLRWLVADMGVPQQSPTLLHCDN 602

Query: 121 RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
           RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALP TRFN
Sbjct: 603 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPSTRFN 662

Query: 181 QLRTKLKLTATLSP 195
           QLRTKLKLTATL P
Sbjct: 663 QLRTKLKLTATLPP 676

[Close]

BLAST of Cmc09g0241661 vs. NCBI nr
Match: TYK26219.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 365.2 bits (936), Expect = 3.6e-97
Identity = 181/194 (93.30%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           MAAP+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVL GYSDADWA DPTDRRSTTGYCF
Sbjct: 1   MAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 60

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
           YLGDSLISWRS KQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQG TLL+CDN
Sbjct: 61  YLGDSLISWRSKKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDN 120

Query: 121 RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
           RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPV TTEQP DIFTKALP TRFN
Sbjct: 121 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVFTTEQPADIFTKALPSTRFN 180

Query: 181 QLRTKLKLTATLSP 195
           QLRTKLKLTATL P
Sbjct: 181 QLRTKLKLTATLPP 194

[Close]

BLAST of Cmc09g0241661 vs. NCBI nr
Match: TYK23446.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 365.2 bits (936), Expect = 3.6e-97
Identity = 180/194 (92.78%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1    MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
            M  P+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVL GYSDADWA DPTDRRSTTGYCF
Sbjct: 1165 MDVPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1224

Query: 61   YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
            YLGDSLISWRS KQSVVSRSST+SEYRALADTTAELLWLRWLLADMGVPQQG TLL+CDN
Sbjct: 1225 YLGDSLISWRSKKQSVVSRSSTKSEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDN 1284

Query: 121  RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
            RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALPFTRFN
Sbjct: 1285 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPFTRFN 1344

Query: 181  QLRTKLKLTATLSP 195
            QLRTKLKLTATL P
Sbjct: 1345 QLRTKLKLTATLPP 1358

[Close]

BLAST of Cmc09g0241661 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.1e-35
Identity = 81/189 (42.86%), Postives = 109/189 (57.67%), Query Frame = 0


Query: 1    MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
            M  P   H  A+ RILRY+ GT  H +     ++L L  YSDADWA D  D  ST GY  
Sbjct: 1273 MHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIV 1332

Query: 61   YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
            YLG   ISW S KQ  V RSSTE+EYR++A+T++E+ W+  LL ++G+      +++CDN
Sbjct: 1333 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDN 1392

Query: 121  RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
              A  +  N +FH R KHI  D HFI + + S  L +  VST +Q  D  TK L  T F 
Sbjct: 1393 VGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQ 1452

Query: 181  QLRTKLKLT 190
               +K+ +T
Sbjct: 1453 NFASKIGVT 1461

[Close]

BLAST of Cmc09g0241661 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-34
Identity = 79/186 (42.47%), Postives = 106/186 (56.99%), Query Frame = 0


Query: 1    MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
            M  P   H+ A+ R+LRY+ GT  H +     ++L L  YSDADWA D  D  ST GY  
Sbjct: 1256 MHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIV 1315

Query: 61   YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
            YLG   ISW S KQ  V RSSTE+EYR++A+T++EL W+  LL ++G+      +++CDN
Sbjct: 1316 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDN 1375

Query: 121  RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
              A  +  N +FH R KHI  D HFI + + S  L +  VST +Q  D  TK L    F 
Sbjct: 1376 VGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQ 1435

Query: 181  QLRTKL 187
                K+
Sbjct: 1436 NFSRKI 1441

[Close]

BLAST of Cmc09g0241661 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 138.7 bits (348), Expect = 7.2e-32
Identity = 74/178 (41.57%), Postives = 107/178 (60.11%), Query Frame = 0


Query: 14   RILRYIKGTLGHELQFSSQSSL--VLFGYSDADWAEDPTDRRSTTGYCFYLGD-SLISWR 73
            R+LRY+KGT+  +L F    +    + GY D+DWA    DR+STTGY F + D +LI W 
Sbjct: 1223 RVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWN 1282

Query: 74   SNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDNRSAIQIAHND 133
            + +Q+ V+ SSTE+EY AL +   E LWL++LL  + +  +    ++ DN+  I IA+N 
Sbjct: 1283 TKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNP 1342

Query: 134  IFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFNQLRTKLKL 189
              H+R KHI+   HF    + +N + L+ + T  Q  DIFTK LP  RF +LR KL L
Sbjct: 1343 SCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc09g0241661 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.2e-30
Identity = 71/176 (40.34%), Postives = 109/176 (61.93%), Query Frame = 0


Query: 4    PQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCFYLG 63
            P   H+ AV  ILRY++GT G  L F   S  +L GY+DAD A D  +R+S+TGY F   
Sbjct: 1143 PGKEHWEAVKWILRYLRGTTGDCLCFGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFS 1202

Query: 64   DSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDNRSA 123
               ISW+S  Q  V+ S+TE+EY A  +T  E++WL+  L ++G+ Q+   +++CD++SA
Sbjct: 1203 GGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK-EYVVYCDSQSA 1262

Query: 124  IQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRF 180
            I ++ N ++H RTKHI+   H+I   +   +L +  +ST E P D+ TK +P  +F
Sbjct: 1263 IDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKF 1316

[Close]

BLAST of Cmc09g0241661 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-20
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           M  P    F  + R+LRY+KGT+ H L     S L +  + D+DWA   + RRSTTG+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLW 99
           +LG ++ISW + +Q  VSRSSTE+EYRALA T AEL W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc09g0241661 vs. ExPASy TrEMBL
Match: A0A1S4E5D2 (uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=LOC107992200 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 181/194 (93.30%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           MA P+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVL GYSDADWA DPTDRRSTTGYCF
Sbjct: 228 MAVPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 287

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
           YLGDSLISWRS KQSVVSRSST+SEYRALADTTAELLWLRWLLADMGVPQQG TLL+CDN
Sbjct: 288 YLGDSLISWRSKKQSVVSRSSTKSEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDN 347

Query: 121 RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
           RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALPFTRFN
Sbjct: 348 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPFTRFN 407

Query: 181 QLRTKLKLTATLSP 195
           QLRTKLKLTATL P
Sbjct: 408 QLRTKLKLTATLPP 421

[Close]

BLAST of Cmc09g0241661 vs. ExPASy TrEMBL
Match: A0A5A7U9B9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00800 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.0e-97
Identity = 180/194 (92.78%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           MAAP+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVLFGYSDADWA DPTDRRSTTGYCF
Sbjct: 483 MAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLFGYSDADWAGDPTDRRSTTGYCF 542

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
           YLGDSLISWRS KQSVVS SSTESEYR LADTTAELLWLRWL+ADMGVPQQ  TLLHCDN
Sbjct: 543 YLGDSLISWRSKKQSVVSHSSTESEYRTLADTTAELLWLRWLVADMGVPQQSPTLLHCDN 602

Query: 121 RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
           RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALP TRFN
Sbjct: 603 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPSTRFN 662

Query: 181 QLRTKLKLTATLSP 195
           QLRTKLKLTATL P
Sbjct: 663 QLRTKLKLTATLPP 676

[Close]

BLAST of Cmc09g0241661 vs. ExPASy TrEMBL
Match: A0A5A7UNP5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003640 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.0e-97
Identity = 181/194 (93.30%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           MAAP+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVL GYSDADW  DPTDRRSTTGYCF
Sbjct: 582 MAAPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWVGDPTDRRSTTGYCF 641

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
           YLGDSLISWRS KQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQG TLL+CDN
Sbjct: 642 YLGDSLISWRSKKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDN 701

Query: 121 RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
           RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALP TRFN
Sbjct: 702 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPSTRFN 761

Query: 181 QLRTKLKLTATLSP 195
           QLRTKLKLTATL P
Sbjct: 762 QLRTKLKLTATLPP 775

[Close]

BLAST of Cmc09g0241661 vs. ExPASy TrEMBL
Match: A0A5A7TG30 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00660 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97
Identity = 180/194 (92.78%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1    MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
            M  P+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVL GYSDADWA DPTDRRSTTGYCF
Sbjct: 1123 MDVPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1182

Query: 61   YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
            YLGDSLISWRS KQSVVSRSST+SEYRALADTTAELLWLRWLLADMGVPQQG TLL+CDN
Sbjct: 1183 YLGDSLISWRSKKQSVVSRSSTKSEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDN 1242

Query: 121  RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
            RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALPFTRFN
Sbjct: 1243 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPFTRFN 1302

Query: 181  QLRTKLKLTATLSP 195
            QLRTKLKLTATL P
Sbjct: 1303 QLRTKLKLTATLPP 1316

[Close]

BLAST of Cmc09g0241661 vs. ExPASy TrEMBL
Match: A0A5D3DIH5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00030 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97
Identity = 180/194 (92.78%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 1    MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
            M  P+TIHFTAVLRILRYIKGTLGH LQFSSQSSLVL GYSDADWA DPTDRRSTTGYCF
Sbjct: 1165 MDVPRTIHFTAVLRILRYIKGTLGHGLQFSSQSSLVLSGYSDADWAGDPTDRRSTTGYCF 1224

Query: 61   YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDN 120
            YLGDSLISWRS KQSVVSRSST+SEYRALADTTAELLWLRWLLADMGVPQQG TLL+CDN
Sbjct: 1225 YLGDSLISWRSKKQSVVSRSSTKSEYRALADTTAELLWLRWLLADMGVPQQGPTLLYCDN 1284

Query: 121  RSAIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTRFN 180
            RSAIQIAHND+FHERTKHIENDCHFI HHLLSNTLLLQPVSTTEQP DIFTKALPFTRFN
Sbjct: 1285 RSAIQIAHNDVFHERTKHIENDCHFIRHHLLSNTLLLQPVSTTEQPADIFTKALPFTRFN 1344

Query: 181  QLRTKLKLTATLSP 195
            QLRTKLKLTATL P
Sbjct: 1345 QLRTKLKLTATLPP 1358

[Close]

BLAST of Cmc09g0241661 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 158.3 bits (399), Expect = 6.2e-39
Identity = 81/176 (46.02%), Postives = 107/176 (60.80%), Query Frame = 0


Query: 3   APQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCFYL 62
           AP+  H  AV++IL YIKGT+G  L +SSQ+ + L  +SDA +      RRST GYC +L
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467

Query: 63  GDSLISWRSNKQSVVSRSSTESEYRALADTTAELLWLRWLLADMGVPQQGSTLLHCDNRS 122
           G SLISW+S KQ VVS+SS E+EYRAL+  T E++WL     ++ +P    TLL CDN +
Sbjct: 468 GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTA 527

Query: 123 AIQIAHNDIFHERTKHIENDCHFIFHHLLSNTLLLQPVSTTEQPDDIFTKALPFTR 179
           AI IA N +FHERTKHIE+DCH +    +    L       ++ D       P  R
Sbjct: 528 AIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQDGFTEYLSPILR 583

[Close]

BLAST of Cmc09g0241661 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MAAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYCF 60
           M  P    F  + R+LRY+KGT+ H L     S L +  + D+DWA   + RRSTTG+C 
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187

Query: 61  YLGDSLISWRSNKQSVVSRSSTESEYRALADTTAELLW 99
           +LG ++ISW + +Q  VSRSSTE+EYRALA T AEL W
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc09g0241661 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-09
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 2  AAPQTIHFTAVLRILRYIKGTLGHELQFSSQSSLVLFGYSDADWAEDPTDRRSTTGYC 60
          +A +T    AV ++L Y+KGT+G  L +S+ S L L  ++D+DWA  P  RRS TG+C
Sbjct: 22 SASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc09g0241661 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903443.1	7.3e-98	93.30	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]	[more]
KAA0057482.1	2.1e-97	93.30	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0050089.1	2.1e-97	92.78	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK26219.1	3.6e-97	93.30	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK23446.1	3.6e-97	92.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc09g0241661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.1e-35	42.86	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.5e-34	42.47	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	7.2e-32	41.57	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	5.2e-30	40.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92519	2.8e-20	50.00	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc09g0241661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E5D2	3.5e-98	93.30	uncharacterized mitochondrial protein AtMg00810-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7U9B9	1.0e-97	92.78	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UNP5	1.0e-97	93.30	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7TG30	1.7e-97	92.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DIH5	1.7e-97	92.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc09g0241661 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.2e-39	46.02	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.0e-21	50.00	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.0e-09	44.83	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF336	SUBFAMILY NOT NAMED	coord: 65..140
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 65..140
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 39..175 e-value: 2.27703E-78 score: 228.507
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 11..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0241661.1	Cmc09g0241661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding