Cmc09g0241491 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0241491
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	CMiso1.1chr09: 3610117 .. 3610668 (-)
RNA-Seq Expression	Cmc09g0241491
Synteny	Cmc09g0241491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCACTCTCAACTCTCACCCTCAATACCCCATTTCCCCTTTCTTATTCCCATTCCAAGTTCTCCCCTCATTCCTTCAGATCCACAACCCTCCATTTCCCCTATCGCCGCGCCACCCTCCTCCGTCCCATTGCCGCCGTCTCCGCCCCGGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAGCCTCACCCTCGAAGAGGCTCGGCTTCTGGTCGACTTCCTCCAAGACAAGCTTGGCGTGTCTGCCGCTGCCTTCGCCCCGGCTGCTGTGGTGGCAGCACCTGGAGGCGCTGTTGGGGGGGACGCGGCAGCGGAGGCAGTAGAGGAGAAGACGGAATTCGATGTGGTGATTGAGGATGTGCCTAGTAATGCAAGGATTGCTGTGATTAAGGCAGTGAGAGCGTTGACAAGCTTGGCTTTGAAGGAAGCTAAAGAACTTATTGAAGGATTGCCAAAGAAGTTTAAAGAAGGGGTTTCAAAAGAAGAAGCTGAGGATGCTAAGAAACAGCTTGAAGATGCTGGAGCTAAAATTGCAATTGTTTAA

mRNA sequence

ATGGCTTCTTCACTCTCAACTCTCACCCTCAATACCCCATTTCCCCTTTCTTATTCCCATTCCAAGTTCTCCCCTCATTCCTTCAGATCCACAACCCTCCATTTCCCCTATCGCCGCGCCACCCTCCTCCGTCCCATTGCCGCCGTCTCCGCCCCGGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAGCCTCACCCTCGAAGAGGCTCGGCTTCTGGTCGACTTCCTCCAAGACAAGCTTGGCGTGTCTGCCGCTGCCTTCGCCCCGGCTGCTGTGGTGGCAGCACCTGGAGGCGCTGTTGGGGGGGACGCGGCAGCGGAGGCAGTAGAGGAGAAGACGGAATTCGATGTGGTGATTGAGGATGTGCCTAGTAATGCAAGGATTGCTGTGATTAAGGCAGTGAGAGCGTTGACAAGCTTGGCTTTGAAGGAAGCTAAAGAACTTATTGAAGGATTGCCAAAGAAGTTTAAAGAAGGGGTTTCAAAAGAAGAAGCTGAGGATGCTAAGAAACAGCTTGAAGATGCTGGAGCTAAAATTGCAATTGTTTAA

Coding sequence (CDS)

ATGGCTTCTTCACTCTCAACTCTCACCCTCAATACCCCATTTCCCCTTTCTTATTCCCATTCCAAGTTCTCCCCTCATTCCTTCAGATCCACAACCCTCCATTTCCCCTATCGCCGCGCCACCCTCCTCCGTCCCATTGCCGCCGTCTCCGCCCCGGAGAAAATCGAAAAACTCGGCTCCGACATCTCCAGCCTCACCCTCGAAGAGGCTCGGCTTCTGGTCGACTTCCTCCAAGACAAGCTTGGCGTGTCTGCCGCTGCCTTCGCCCCGGCTGCTGTGGTGGCAGCACCTGGAGGCGCTGTTGGGGGGGACGCGGCAGCGGAGGCAGTAGAGGAGAAGACGGAATTCGATGTGGTGATTGAGGATGTGCCTAGTAATGCAAGGATTGCTGTGATTAAGGCAGTGAGAGCGTTGACAAGCTTGGCTTTGAAGGAAGCTAAAGAACTTATTGAAGGATTGCCAAAGAAGTTTAAAGAAGGGGTTTCAAAAGAAGAAGCTGAGGATGCTAAGAAACAGCTTGAAGATGCTGGAGCTAAAATTGCAATTGTTTAA

Protein sequence

MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKIAIV

Homology

[Close]

BLAST of Cmc09g0241491 vs. NCBI nr
Match: XP_008458778.1 (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 1.0e-85
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI
Sbjct: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180

Query: 181 AIV 184
           AIV
Sbjct: 181 AIV 183

[Close]

BLAST of Cmc09g0241491 vs. NCBI nr
Match: KAA0037532.1 (50S ribosomal protein L12 [Cucumis melo var. makuwa] >TYK02007.1 50S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-85
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLE+AGAKI
Sbjct: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 AIV 184
           AIV
Sbjct: 181 AIV 183

[Close]

BLAST of Cmc09g0241491 vs. NCBI nr
Match: XP_004142800.1 (50S ribosomal protein L12, chloroplastic [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 9.6e-76
Identity = 168/183 (91.80%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MASSLSTLTLNTP  L  SHS FSP SFR TTL FPYRR T LRPIAAVSAPEKIEKLGS
Sbjct: 1   MASSLSTLTLNTPLHLPRSHSSFSPLSFRPTTLQFPYRRPTHLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGG+AAAEAVEEKTEFDVVI
Sbjct: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           EDVPSNARIAVIK+VRA+TSLALKEAKELIEGLPKKFKEGVSKEEA+DAKKQLE+AGAKI
Sbjct: 121 EDVPSNARIAVIKSVRAMTSLALKEAKELIEGLPKKFKEGVSKEEADDAKKQLEEAGAKI 180

Query: 181 AIV 184
           AIV
Sbjct: 181 AIV 183

[Close]

BLAST of Cmc09g0241491 vs. NCBI nr
Match: XP_038890576.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 277.7 bits (709), Expect = 7.1e-71
Identity = 162/191 (84.82%), Postives = 171/191 (89.53%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFP--------YRRATLLRPIAAVSAP 60
           MAS+LS LTL++P  LSYSHS  S HSF+STTL FP          RAT LRPIAA+SAP
Sbjct: 1   MASTLSILTLHSPSHLSYSHSSLSTHSFKSTTLQFPSHLSSIAVSHRATHLRPIAAISAP 60

Query: 61  EKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEE 120
           EKIEKLGSDIS+LTLEEARLLVDFLQDKLGVSAA+FAPAAVVAAPGG  GG+AAAEAVEE
Sbjct: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAASFAPAAVVAAPGGTAGGEAAAEAVEE 120

Query: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEDAGAKIAIV 184
           LE+AGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Cmc09g0241491 vs. NCBI nr
Match: KAG6578656.1 (50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.6 bits (701), Expect = 6.0e-70
Identity = 158/183 (86.34%), Postives = 168/183 (91.80%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MAS+LSTLTL TP  LS+SHS FS  SF+ TTL F   RAT LRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSFKPTTLPFASHRATRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DIS+LTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGG  GGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           E+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSK+EAEDAKKQLE+AGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKI 180

Query: 181 AIV 184
            IV
Sbjct: 181 TIV 183

[Close]

BLAST of Cmc09g0241491 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-53
Identity = 129/189 (68.25%), Postives = 151/189 (79.89%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPY-------RRATLLRPIAAVSAPE 60
           MAS+LST+TL +P P S + S  +   F   TL FP        RRAT LRP+AAV APE
Sbjct: 1   MASTLSTITLRSPSP-STATSTHASIPFPKKTLEFPIRTPKLQNRRATFLRPLAAVEAPE 60

Query: 61  KIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEK 120
           K+ +LG +IS+LTL +A+ LV++LQDKLGV+AA+FAPAAVVAAPG A     A   VEEK
Sbjct: 61  KVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EDAGAKIAI 183
           E+AGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of Cmc09g0241491 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.1e-53
Identity = 127/189 (67.20%), Postives = 150/189 (79.37%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFP-------YRRATLLRPIAAVSAPE 60
           MAS+LST+TL +P P S + S  +   F    L FP       +RRAT LRP+AAV APE
Sbjct: 1   MASTLSTITLRSPSP-STASSTHASIPFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPE 60

Query: 61  KIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEK 120
           K+ +LG +IS+LTL +A+ LV++LQDKLGV+AA+FAPAAV AAPG A     A   VEEK
Sbjct: 61  KVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAPAVVEEK 120

Query: 121 TEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQL 180
           TEFDVVI++VPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EDAGAKIAI 183
           E+AGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of Cmc09g0241491 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-51
Identity = 128/192 (66.67%), Postives = 148/192 (77.08%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSP-------HSFRSTT--LHFPYRRATLLRPIAAVSA 60
           MA++ +  TLN P   S+ +S   P         FR+TT  +     R T LRPIAAV A
Sbjct: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60

Query: 61  PEKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVE 120
           PEKIE+LG+ +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA VAAPG       AA AVE
Sbjct: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAPAVE 120

Query: 121 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDV I++VPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEGVSK++AEDAKK
Sbjct: 121 EKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKK 180

Query: 181 QLEDAGAKIAIV 184
           QLEDAGAK++IV
Sbjct: 181 QLEDAGAKVSIV 189

[Close]

BLAST of Cmc09g0241491 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-47
Identity = 123/191 (64.40%), Postives = 147/191 (76.96%), Query Frame = 0


Query: 4   SLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYR-----------RATLLRPIAAVSAP 63
           S++T   ++ +P   S + F     R+TT+ FP R           RAT LRPIAAV AP
Sbjct: 7   SIATTIRSSSYPTLASINHFPS---RTTTIEFPSRFGGGSSSTLTHRATHLRPIAAVEAP 66

Query: 64  EKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAP-AAVVAAPGGAVGGDAAAEAVE 123
           EKIEK+GS+ISSLTLEEAR+LVD+LQDK GVS  + AP AA VAAP  A GG  AA  VE
Sbjct: 67  EKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AAAVVE 126

Query: 124 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 183
           E+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE+AKK
Sbjct: 127 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 186

[Close]

BLAST of Cmc09g0241491 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 5.7e-47
Identity = 122/187 (65.24%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 6   STLTLNTPFPLSYSHSKFSPHSFRS--TTLHFPYR-------RATLLRPIAAVSAPEKIE 65
           +TL++ T    S   +  S H F S  T + FP+R       RA  LRPI+AV APEKIE
Sbjct: 4   TTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSSSHRAINLRPISAVEAPEKIE 63

Query: 66  KLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAP-AAVVAAPGGAVGGDAAAEAVEEKTE 125
           K+GS+ISSLTLEEAR+LVD+LQDK GVS  + AP AA VAAP  A GG  AA  VEE+TE
Sbjct: 64  KIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AAAVVEEQTE 123

Query: 126 FDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLED 183
           FDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE+AKK LE+
Sbjct: 124 FDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEE 183

[Close]

BLAST of Cmc09g0241491 vs. ExPASy TrEMBL
Match: A0A1S3C863 (50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103498080 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.0e-86
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI
Sbjct: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180

Query: 181 AIV 184
           AIV
Sbjct: 181 AIV 183

[Close]

BLAST of Cmc09g0241491 vs. ExPASy TrEMBL
Match: A0A5A7T262 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001220 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.4e-85
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLE+AGAKI
Sbjct: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 AIV 184
           AIV
Sbjct: 181 AIV 183

[Close]

BLAST of Cmc09g0241491 vs. ExPASy TrEMBL
Match: A0A0A0KSG5 (SocL12 (Chloroplast ribosomal protein) OS=Cucumis sativus OX=3659 GN=Csa_5G524750 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.7e-76
Identity = 168/183 (91.80%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MASSLSTLTLNTP  L  SHS FSP SFR TTL FPYRR T LRPIAAVSAPEKIEKLGS
Sbjct: 1   MASSLSTLTLNTPLHLPRSHSSFSPLSFRPTTLQFPYRRPTHLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGG+AAAEAVEEKTEFDVVI
Sbjct: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           EDVPSNARIAVIK+VRA+TSLALKEAKELIEGLPKKFKEGVSKEEA+DAKKQLE+AGAKI
Sbjct: 121 EDVPSNARIAVIKSVRAMTSLALKEAKELIEGLPKKFKEGVSKEEADDAKKQLEEAGAKI 180

Query: 181 AIV 184
           AIV
Sbjct: 181 AIV 183

[Close]

BLAST of Cmc09g0241491 vs. ExPASy TrEMBL
Match: A0A6J1JTI3 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489595 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.8e-70
Identity = 158/183 (86.34%), Postives = 167/183 (91.26%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MAS+LSTLTL TP  LS+SHS FS  S + TTL FP  RAT LRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFPSHRATRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DIS+LTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGG  GGD AAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDVAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           E+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLE+AGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 AIV 184
            IV
Sbjct: 181 TIV 183

[Close]

BLAST of Cmc09g0241491 vs. ExPASy TrEMBL
Match: A0A6J1FMH9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445547 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.5e-69
Identity = 157/183 (85.79%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60
           MAS+LSTLTL TP  LS+SHS FS  S + TTL F   R T LRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120
           DIS+LTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGG  GGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120

Query: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKI 180
           E+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLE+AGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 AIV 184
            IV
Sbjct: 181 TIV 183

[Close]

BLAST of Cmc09g0241491 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 189.9 bits (481), Expect = 1.8e-48
Identity = 123/191 (64.40%), Postives = 147/191 (76.96%), Query Frame = 0


Query: 4   SLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYR-----------RATLLRPIAAVSAP 63
           S++T   ++ +P   S + F     R+TT+ FP R           RAT LRPIAAV AP
Sbjct: 7   SIATTIRSSSYPTLASINHFPS---RTTTIEFPSRFGGGSSSTLTHRATHLRPIAAVEAP 66

Query: 64  EKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAP-AAVVAAPGGAVGGDAAAEAVE 123
           EKIEK+GS+ISSLTLEEAR+LVD+LQDK GVS  + AP AA VAAP  A GG  AA  VE
Sbjct: 67  EKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AAAVVE 126

Query: 124 EKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 183
           E+TEFDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE+AKK
Sbjct: 127 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 186

[Close]

BLAST of Cmc09g0241491 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 188.7 bits (478), Expect = 4.1e-48
Identity = 122/187 (65.24%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 6   STLTLNTPFPLSYSHSKFSPHSFRS--TTLHFPYR-------RATLLRPIAAVSAPEKIE 65
           +TL++ T    S   +  S H F S  T + FP+R       RA  LRPI+AV APEKIE
Sbjct: 4   TTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSSSHRAINLRPISAVEAPEKIE 63

Query: 66  KLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAP-AAVVAAPGGAVGGDAAAEAVEEKTE 125
           K+GS+ISSLTLEEAR+LVD+LQDK GVS  + AP AA VAAP  A GG  AA  VEE+TE
Sbjct: 64  KIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP--ADGG--AAAVVEEQTE 123

Query: 126 FDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLED 183
           FDVVI +VPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEG++K+EAE+AKK LE+
Sbjct: 124 FDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEE 183

[Close]

BLAST of Cmc09g0241491 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-38
Identity = 99/180 (55.00%), Postives = 124/180 (68.89%), Query Frame = 0


Query: 17  SYSHSKFSPHSF--RSTTLHFPY-----------RRATLLRPIAAVSAPEKIEKLGSDIS 76
           S+S    S H F  R  ++ FP+            RA  L PI+AV  P+KI+K+GS+IS
Sbjct: 16  SFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVKTPKKIKKIGSEIS 75

Query: 77  SLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVIEDV 136
           SLTLEE+R+LVD++QDK GVS    APAA    P    GG  A  +VE +T FDVVI DV
Sbjct: 76  SLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG--ATASVERQTTFDVVINDV 135

Query: 137 PSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEDAGAKIAIV 184
           P   RIAVI A+RA+TSL+L E+KELIEG PKKFKEGV+K+EAE+ K QLE+AGAK++IV
Sbjct: 136 PRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKTQLEEAGAKVSIV 193

[Close]

BLAST of Cmc09g0241491 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-15
Identity = 54/136 (39.71%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 53  EKIEKLGSDISSLTLEEARLLVDFLQDKLGVS----AAAFAPAAVVAAPGG--AVGGDAA 112
           E + K+ +++S+LTL E   L + L+ KL +S     AA  P   +   G   + GG+  
Sbjct: 43  ENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGK 102

Query: 113 AEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEA 172
            +  E KT FDV+++   + ++I VIK VR +T+L LKEAK+L+E  P   K+GVSKEEA
Sbjct: 103 EKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEA 162

Query: 173 EDAKKQLEDAGAKIAI 183
           E   ++L+  GAK+A+
Sbjct: 163 EKIIEKLKAVGAKVAM 178

[Close]

BLAST of Cmc09g0241491 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-10
Identity = 51/142 (35.92%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 53  EKIEKLGSDISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAP--GGAVG-------- 112
           +++ +L  +ISSLTL E   L   +  K G++     P   V  P  GG VG        
Sbjct: 69  DRVFRLVDEISSLTLLEISELGSIIMKKKGMTE---LPTVAVMKPGAGGGVGVGGGGGMV 128

Query: 113 --GDAAAEAVEEKTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEG 172
                + EA  EKT F++ +E   ++A+I +IK +R+ T L LKEAK L+E  P   K G
Sbjct: 129 SQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAG 188

Query: 173 VSKEEAEDAKKQLEDAGAKIAI 183
           +SKEE E   ++L+  GAK+ +
Sbjct: 189 LSKEEGEKILEKLKALGAKVVL 207

The following BLAST results are available for this feature:

BLAST of Cmc09g0241491 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458778.1	1.0e-85	100.00	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo]	[more]
KAA0037532.1	3.0e-85	99.45	50S ribosomal protein L12 [Cucumis melo var. makuwa] >TYK02007.1 50S ribosomal p...	[more]
XP_004142800.1	9.6e-76	91.80	50S ribosomal protein L12, chloroplastic [Cucumis sativus]	[more]
XP_038890576.1	7.1e-71	84.82	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]
KAG6578656.1	6.0e-70	86.34	50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Cmc09g0241491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36688	2.4e-53	68.25	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	9.1e-53	67.20	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P02398	1.0e-51	66.67	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36210	2.6e-47	64.40	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36212	5.7e-47	65.24	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Cmc09g0241491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C863	5.0e-86	100.00	50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5A7T262	1.4e-85	99.45	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KSG5	4.7e-76	91.80	SocL12 (Chloroplast ribosomal protein) OS=Cucumis sativus OX=3659 GN=Csa_5G52475...	[more]
A0A6J1JTI3	3.8e-70	86.34	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FMH9	5.5e-69	85.79	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Cmc09g0241491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27830.1	1.8e-48	64.40	ribosomal protein L12-A	[more]
AT3G27850.1	4.1e-48	65.24	ribosomal protein L12-C	[more]
AT3G27840.1	1.7e-38	55.00	ribosomal protein L12-B	[more]
AT4G36420.1	5.9e-15	39.71	Ribosomal protein L12 family protein	[more]
AT1G70190.1	1.5e-10	35.92	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 54..111 e-value: 6.8E-13 score: 50.4
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 54..118
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 54..182 e-value: 1.6E-32 score: 110.5
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..182
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 50..183 score: 22.456055
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 53..182 e-value: 1.0321E-40 score: 132.279
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 116..182 e-value: 5.0E-24 score: 84.5
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 54..100 e-value: 2.6E-12 score: 46.2
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 112..182 e-value: 1.0E-25 score: 91.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 111..182
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0241491.1	Cmc09g0241491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome