Cmc09g0241431 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0241431
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	60S ribosomal protein L32
Location	CMiso1.1chr09: 3559316 .. 3559539 (+)
RNA-Seq Expression	Cmc09g0241431
Synteny	Cmc09g0241431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCACAACAGGTTTGTGCAAGCTCTCATATGCACTTATTCTAACATTTTTGCATTTTTTGTCTTTGTTTGATGTATAATTCTTTTTATTGCAGAACCTACTGTGCTGAGATTGCTCATGATATTTCAACAAAGAAAAGGAAAGAGATTGTTGAGAGGGAAGCTCAACTTGATGTTGTAGTTGCCGACAAGCTGGCTAGGTTGCGTAGCCAAAGAAGATGA

mRNA sequence

ATGATGCACAACAGAACCTACTGTGCTGAGATTGCTCATGATATTTCAACAAAGAAAAGGAAAGAGATTGTTGAGAGGGAAGCTCAACTTGATGTTGTAGTTGCCGACAAGCTGGCTAGGTTGCGTAGCCAAAGAAGATGA

Coding sequence (CDS)

ATGATGCACAACAGAACCTACTGTGCTGAGATTGCTCATGATATTTCAACAAAGAAAAGGAAAGAGATTGTTGAGAGGGAAGCTCAACTTGATGTTGTAGTTGCCGACAAGCTGGCTAGGTTGCGTAGCCAAAGAAGATGA

Protein sequence

MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQRR

Homology

[Close]

BLAST of Cmc09g0241431 vs. NCBI nr
Match: TYK01062.1 (60S ribosomal protein L32-1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQRR 47
          MMHNRTYCA+IAHD+STKKRKE VEREAQLDVVVA+KLARL SQRR
Sbjct: 21 MMHNRTYCAKIAHDVSTKKRKEFVEREAQLDVVVANKLARLCSQRR 66

[Close]

BLAST of Cmc09g0241431 vs. NCBI nr
Match: XP_022926464.1 (60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022926465.1 60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_023003539.1 60S ribosomal protein L32-1-like [Cucurbita maxima] >XP_023003541.1 60S ribosomal protein L32-1-like [Cucurbita maxima] >XP_023517265.1 60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo] >XP_023517267.1 60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAHD+STKKRKEIVER AQLDVVV +KLARLRSQ
Sbjct: 87  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. NCBI nr
Match: KAA0057090.1 (60S ribosomal protein L32-1 [Cucumis melo var. makuwa] >TYK20625.1 60S ribosomal protein L32-1 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAHD+STKKRKEIVER AQLDVVV +KLARLRSQ
Sbjct: 124 MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 167

[Close]

BLAST of Cmc09g0241431 vs. NCBI nr
Match: XP_012473771.1 (PREDICTED: 60S ribosomal protein L32-1 [Gossypium raimondii] >XP_012490909.1 PREDICTED: 60S ribosomal protein L32-1 [Gossypium raimondii] >XP_016696230.1 60S ribosomal protein L32-1 [Gossypium hirsutum] >XP_016744931.1 60S ribosomal protein L32-1 [Gossypium hirsutum] >XP_017624736.1 PREDICTED: 60S ribosomal protein L32-1 [Gossypium arboreum] >XP_017626661.1 PREDICTED: 60S ribosomal protein L32-1 [Gossypium arboreum] >XP_017628208.1 PREDICTED: 60S ribosomal protein L32-1 [Gossypium arboreum] >XP_017639898.1 PREDICTED: 60S ribosomal protein L32-1 [Gossypium arboreum] >XP_017639904.1 PREDICTED: 60S ribosomal protein L32-1 [Gossypium arboreum] >XP_021273869.1 60S ribosomal protein L32-1 [Herrania umbratica] >XP_022727936.1 60S ribosomal protein L32-1 [Durio zibethinus] >XP_022758766.1 60S ribosomal protein L32-1 [Durio zibethinus] >XP_039027548.1 60S ribosomal protein L32-1-like [Hibiscus syriacus] >XP_040973569.1 60S ribosomal protein L32-1 [Gossypium hirsutum] >XP_040973570.1 60S ribosomal protein L32-1 [Gossypium hirsutum] >XP_040973571.1 60S ribosomal protein L32-1 [Gossypium hirsutum] >XP_040973572.1 60S ribosomal protein L32-1 [Gossypium hirsutum] >KAB2003792.1 hypothetical protein ES319_D11G154700v1 [Gossypium barbadense] >KAG8477876.1 hypothetical protein CXB51_027533 [Gossypium anomalum] >MBA0686357.1 hypothetical protein [Gossypium aridum] >MBA0769781.1 hypothetical protein [Gossypium trilobum] >MBA0802743.1 hypothetical protein [Gossypium harknessii] >MBA0859198.1 hypothetical protein [Gossypium schwendimanii] >TYG45308.1 hypothetical protein ES288_D11G163100v1 [Gossypium darwinii] >TYH43952.1 hypothetical protein ES332_D11G160600v1 [Gossypium tomentosum] >TYI55692.1 hypothetical protein E1A91_D11G158200v1 [Gossypium mustelinum])

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAHD+STKKRKEIVER AQLDVVV +KLARLRSQ
Sbjct: 87  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. NCBI nr
Match: MBA0615238.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 80.9 bits (198), Expect = 3.2e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAHD+STKKRKEIVER AQLDVVV +KLARLRSQ
Sbjct: 87  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. ExPASy Swiss-Prot
Match: Q9FHG2 (60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.0e-13
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAH+ISTKKRK IVER +QLDVVV++KL RLRSQ
Sbjct: 87  MMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. ExPASy Swiss-Prot
Match: P49211 (60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 4.0e-13
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAH++STKKRK IVER +QLDVVV ++LARLRSQ
Sbjct: 87  MMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. ExPASy Swiss-Prot
Match: P51421 (60S ribosomal protein L32 (Fragment) OS=Zea mays OX=4577 GN=RPL32 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-09
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6  TYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
          TYCAEIAH++STKKRKEIVER AQLD+VV  KLAR  SQ
Sbjct: 1  TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQ 39

[Close]

BLAST of Cmc09g0241431 vs. ExPASy Swiss-Prot
Match: Q962T1 (60S ribosomal protein L32 OS=Spodoptera frugiperda OX=7108 GN=RpL32 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-08
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MM NR YCAEIAH +S+KKRK IVER  QL + V +  ARLRSQ
Sbjct: 88  MMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQ 131

[Close]

BLAST of Cmc09g0241431 vs. ExPASy Swiss-Prot
Match: P04359 (60S ribosomal protein L32 OS=Drosophila melanogaster OX=7227 GN=RpL32 PE=1 SV=3)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-07
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           +M NR YC EIAH +S+KKRKEIVER  QL V + +   RLRSQ
Sbjct: 88  LMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQ 131

[Close]

BLAST of Cmc09g0241431 vs. ExPASy TrEMBL
Match: A0A5D3BQL3 (60S ribosomal protein L32-1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00760 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-13
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1  MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQRR 47
          MMHNRTYCA+IAHD+STKKRKE VEREAQLDVVVA+KLARL SQRR
Sbjct: 21 MMHNRTYCAKIAHDVSTKKRKEFVEREAQLDVVVANKLARLCSQRR 66

[Close]

BLAST of Cmc09g0241431 vs. ExPASy TrEMBL
Match: A0A6J1KGP3 (60S ribosomal protein L32-1 OS=Cucurbita maxima OX=3661 GN=LOC111495610 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAHD+STKKRKEIVER AQLDVVV +KLARLRSQ
Sbjct: 87  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. ExPASy TrEMBL
Match: A0A1U8K133 (60S ribosomal protein L32-1 OS=Gossypium hirsutum OX=3635 GN=LOC107912532 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAHD+STKKRKEIVER AQLDVVV +KLARLRSQ
Sbjct: 87  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. ExPASy TrEMBL
Match: A0A6J1KPI9 (60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111497112 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAHD+STKKRKEIVER AQLDVVV +KLARLRSQ
Sbjct: 87  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. ExPASy TrEMBL
Match: A0A5D2FU43 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A07G106200v1 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAHD+STKKRKEIVER AQLDVVV +KLARLRSQ
Sbjct: 87  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. TAIR 10
Match: AT5G46430.1 (Ribosomal protein L32e )

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-14
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAH+ISTKKRK IVER +QLDVVV++KL RLRSQ
Sbjct: 87  MMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. TAIR 10
Match: AT5G46430.2 (Ribosomal protein L32e )

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-14
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAH+ISTKKRK IVER +QLDVVV++KL RLRSQ
Sbjct: 87  MMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQ 130

[Close]

BLAST of Cmc09g0241431 vs. TAIR 10
Match: AT4G18100.1 (Ribosomal protein L32e )

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-14
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1   MMHNRTYCAEIAHDISTKKRKEIVEREAQLDVVVADKLARLRSQ 45
           MMHNRTYCAEIAH++STKKRK IVER +QLDVVV ++LARLRSQ
Sbjct: 87  MMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQ 130

The following BLAST results are available for this feature:

BLAST of Cmc09g0241431 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01062.1	1.9e-12	89.13	60S ribosomal protein L32-1-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_022926464.1	3.2e-12	90.91	60S ribosomal protein L32-1-like [Cucurbita moschata] >XP_022926465.1 60S riboso...	[more]
KAA0057090.1	3.2e-12	90.91	60S ribosomal protein L32-1 [Cucumis melo var. makuwa] >TYK20625.1 60S ribosomal...	[more]
XP_012473771.1	3.2e-12	90.91	PREDICTED: 60S ribosomal protein L32-1 [Gossypium raimondii] >XP_012490909.1 PRE...	[more]
MBA0615238.1	3.2e-12	90.91	hypothetical protein [Gossypium davidsonii]	[more]

BLAST of Cmc09g0241431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHG2	3.0e-13	84.09	60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1	[more]
P49211	4.0e-13	81.82	60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2	[more]
P51421	2.7e-09	79.49	60S ribosomal protein L32 (Fragment) OS=Zea mays OX=4577 GN=RPL32 PE=2 SV=1	[more]
Q962T1	3.8e-08	65.91	60S ribosomal protein L32 OS=Spodoptera frugiperda OX=7108 GN=RpL32 PE=2 SV=1	[more]
P04359	4.2e-07	61.36	60S ribosomal protein L32 OS=Drosophila melanogaster OX=7227 GN=RpL32 PE=1 SV=3	[more]

BLAST of Cmc09g0241431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQL3	9.1e-13	89.13	60S ribosomal protein L32-1-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1KGP3	1.6e-12	90.91	60S ribosomal protein L32-1 OS=Cucurbita maxima OX=3661 GN=LOC111495610 PE=3 SV=...	[more]
A0A1U8K133	1.6e-12	90.91	60S ribosomal protein L32-1 OS=Gossypium hirsutum OX=3635 GN=LOC107912532 PE=3 S...	[more]
A0A6J1KPI9	1.6e-12	90.91	60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111497112 PE=...	[more]
A0A5D2FU43	1.6e-12	90.91	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A07G106200v1 PE=...	[more]

BLAST of Cmc09g0241431 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46430.1	2.1e-14	84.09	Ribosomal protein L32e	[more]
AT5G46430.2	2.1e-14	84.09	Ribosomal protein L32e	[more]
AT4G18100.1	2.8e-14	81.82	Ribosomal protein L32e	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001515	Ribosomal protein L32e	PFAM	PF01655	Ribosomal_L32e	coord: 1..35 e-value: 1.0E-9 score: 38.8
IPR001515	Ribosomal protein L32e	PANTHER	PTHR23413	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	coord: 1..45
None	No IPR available	PANTHER	PTHR23413:SF13	60S RIBOSOMAL PROTEIN L32-1-RELATED	coord: 1..45
IPR036351	Ribosomal protein L32e superfamily	SUPERFAMILY	52042	Ribosomal protein L32e	coord: 2..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0241431.1	Cmc09g0241431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016020	membrane
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome