Cmc09g0240991 (gene) Melon (Charmono) v1.1

Overview
NameCmc09g0240991
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
LocationCMiso1.1chr09: 3007527 .. 3008126 (-)
RNA-Seq ExpressionCmc09g0240991
SyntenyCmc09g0240991
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATGTATCGTCAAGGTACTGAATTTCTAATTGTACAAATCTACGTTGACGACATTATATTCGGAGGCACGTCCTCAGCCTATGTTGAACAGTTTGTTGATCAGATGAAGGGAGAATTCGAAATGAGCATGGTTTGGGAACTATCCTTCTTCCTGGGTTTTCAAATTAAGCAAGAAAAAACAAGGATCTTCTTCTCTCAAGAAAAATATGCAAAGAACCTCATATCCAAGTTTGCAATGGATAAGGCCAAACCTAAAAGAACACTCGCTGCTACACATCTGAAAATGACCAAGGACATAATTGGAGAAAAAGTTGATACAAATCTGTACCGCAGTATAATTAGCAGTTTGCTCTACCTTACAGCCAGCAGACCGGATATAGCTTTTGCAGTAGGCTTATGTGCTCGGTATCAGGCTGACCCTCGAACGTCACATCTTTATAATGCTAAACGCATATTGAAATATGTATTAAGTACATTTAATTATGGTCTTTGGTATACTTATGATACAACTGGTACTCTTATTGGCTACAGTGATGCAGACTGGGCAGGATGTTCGATGATCAAAAGAGCACATCTGGAGGATGTTTCTTCTTAG

mRNA sequence

ATGTTTATGTATCGTCAAGGTACTGAATTTCTAATTGTACAAATCTACGTTGACGACATTATATTCGGAGGCACGTCCTCAGCCTATGTTGAACAGTTTGTTGATCAGATGAAGGGAGAATTCGAAATGAGCATGGTTTGGGAACTATCCTTCTTCCTGGGTTTTCAAATTAAGCAAGAAAAAACAAGGATCTTCTTCTCTCAAGAAAAATATGCAAAGAACCTCATATCCAAGTTTGCAATGGATAAGGCCAAACCTAAAAGAACACTCGCTGCTACACATCTGAAAATGACCAAGGACATAATTGGAGAAAAAGTTGATACAAATCTGTACCGCAGTATAATTAGCAGTTTGCTCTACCTTACAGCCAGCAGACCGGATATAGCTTTTGCAGTAGGCTTATGTGCTCGGTATCAGGCTGACCCTCGAACGTCACATCTTTATAATGCTAAACGCATATTGAAATATGTATTAAGTACATTTAATTATGGTCTTTGGTATACTTATGATACAACTGGTACTCTTATTGGCTACAGTGATGCAGACTGGGCAGGATGTTCGATGATCAAAAGAGCACATCTGGAGGATGTTTCTTCTTAG

Coding sequence (CDS)

ATGTTTATGTATCGTCAAGGTACTGAATTTCTAATTGTACAAATCTACGTTGACGACATTATATTCGGAGGCACGTCCTCAGCCTATGTTGAACAGTTTGTTGATCAGATGAAGGGAGAATTCGAAATGAGCATGGTTTGGGAACTATCCTTCTTCCTGGGTTTTCAAATTAAGCAAGAAAAAACAAGGATCTTCTTCTCTCAAGAAAAATATGCAAAGAACCTCATATCCAAGTTTGCAATGGATAAGGCCAAACCTAAAAGAACACTCGCTGCTACACATCTGAAAATGACCAAGGACATAATTGGAGAAAAAGTTGATACAAATCTGTACCGCAGTATAATTAGCAGTTTGCTCTACCTTACAGCCAGCAGACCGGATATAGCTTTTGCAGTAGGCTTATGTGCTCGGTATCAGGCTGACCCTCGAACGTCACATCTTTATAATGCTAAACGCATATTGAAATATGTATTAAGTACATTTAATTATGGTCTTTGGTATACTTATGATACAACTGGTACTCTTATTGGCTACAGTGATGCAGACTGGGCAGGATGTTCGATGATCAAAAGAGCACATCTGGAGGATGTTTCTTCTTAG

Protein sequence

MFMYRQGTEFLIVQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAKNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAVGLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAGCSMIKRAHLEDVSS
Homology
BLAST of Cmc09g0240991 vs. NCBI nr
Match: TYJ96981.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 7.0e-72
Identity = 140/171 (81.87%), Postives = 150/171 (87.72%), Query Frame = 0

Query: 15  IYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAKN 74
           +YVDDIIFGGTSS YVEQFV QM  EFEMSMV EL+FFLGFQIKQE T IFFSQ+KY KN
Sbjct: 1   MYVDDIIFGGTSSVYVEQFVAQMNREFEMSMVGELTFFLGFQIKQENTGIFFSQKKYTKN 60

Query: 75  LISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAVGL 134
           LISKF MDKA+PKRT AA HLKMTKD  GEKVDTNLYRSII SLLYLTASR DIAF VG+
Sbjct: 61  LISKFGMDKARPKRTPAAIHLKMTKDTNGEKVDTNLYRSIIGSLLYLTASRLDIAFVVGV 120

Query: 135 CARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAG 186
           CARYQADP TSHL++AKRILKY+  TFNYG+WYTYDTTGTL+GY DADW G
Sbjct: 121 CARYQADPHTSHLHSAKRILKYISGTFNYGIWYTYDTTGTLVGYCDADWVG 171

BLAST of Cmc09g0240991 vs. NCBI nr
Match: KAA0038150.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK20453.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 280.8 bits (717), Expect = 9.2e-72
Identity = 139/183 (75.96%), Postives = 161/183 (87.98%), Query Frame = 0

Query: 13  VQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYA 72
           VQIYV+DIIFGGTSSAYV+QFV+QMKGEFEMSMV EL+FF+GFQIKQ++T IFFSQEKYA
Sbjct: 147 VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIGFQIKQDETGIFFSQEKYA 206

Query: 73  KNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAV 132
           KNLISKF MDKAKPK+T AATHLK+TKD   E+VD++LYRSII SLL L ASRPDIAFAV
Sbjct: 207 KNLISKFRMDKAKPKQTPAATHLKLTKDATEEQVDSSLYRSIIGSLLNLIASRPDIAFAV 266

Query: 133 GLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAGCSMIKRA 192
           G+CARYQADPRTSHL +AKRILKY++ T N+ LWYT+DTTG L+ Y DADW GCS  +++
Sbjct: 267 GMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTTGVLVRYCDADWVGCSDDRKS 326

Query: 193 HLE 196
             E
Sbjct: 327 TYE 329

BLAST of Cmc09g0240991 vs. NCBI nr
Match: KAA0038409.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-71
Identity = 140/171 (81.87%), Postives = 150/171 (87.72%), Query Frame = 0

Query: 15  IYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAKN 74
           +YVDDIIFGGTSS YVEQFV QM  EFEMSMV EL+FFLGFQIKQE T IFFSQ+KY KN
Sbjct: 1   MYVDDIIFGGTSSVYVEQFVAQMNREFEMSMVGELTFFLGFQIKQENTGIFFSQKKYTKN 60

Query: 75  LISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAVGL 134
           LISKF MDKA+PKRT AATHLKMTKD  GEKVDTNLYRSII SLLYL ASRPDIAFAVG+
Sbjct: 61  LISKFGMDKARPKRTPAATHLKMTKDTNGEKVDTNLYRSIIGSLLYLIASRPDIAFAVGV 120

Query: 135 CARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAG 186
            ARYQADP  SHL++AKRILKY+  TFNYG+WYTYDTTGTL+GY DADW G
Sbjct: 121 YARYQADPHMSHLHSAKRILKYISDTFNYGIWYTYDTTGTLVGYCDADWVG 171

BLAST of Cmc09g0240991 vs. NCBI nr
Match: KAA0056162.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-67
Identity = 136/175 (77.71%), Postives = 150/175 (85.71%), Query Frame = 0

Query: 13  VQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYA 72
           VQIYVDDIIFGGTSS YVEQFV+QMKGEFE+SMV EL+FFLGFQIKQ KTRIFFSQEKYA
Sbjct: 342 VQIYVDDIIFGGTSSTYVEQFVNQMKGEFEISMVGELTFFLGFQIKQYKTRIFFSQEKYA 401

Query: 73  KNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAV 132
           KNLISKF MDKAKP         K+TKD   EKVD++LYRSII SLLYLTASRPDIAF V
Sbjct: 402 KNLISKFGMDKAKP---------KLTKDATREKVDSSLYRSIIGSLLYLTASRPDIAFTV 461

Query: 133 GLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAGCS 188
           G+CARYQAD RTSHL++AKRILKY++ T N+GLWYT+DTT  L+GY DADWA CS
Sbjct: 462 GVCARYQADRRTSHLHSAKRILKYIIGTCNFGLWYTFDTTEVLVGYCDADWAVCS 507

BLAST of Cmc09g0240991 vs. NCBI nr
Match: KAA0065488.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08728.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 3.7e-65
Identity = 129/171 (75.44%), Postives = 148/171 (86.55%), Query Frame = 0

Query: 14  QIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAK 73
           +IYVDDIIF  TS  YV +FV QMKGEFEM+MV EL+FFLGFQI+QE+T IFFSQEKYAK
Sbjct: 38  KIYVDDIIFRRTSLDYVVKFVRQMKGEFEMTMVGELTFFLGFQIRQEETSIFFSQEKYAK 97

Query: 74  NLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAVG 133
           NLISKF MDKAKPKRT   THLKMTKD  GEKVD++L++SII SLLYLTASRPDIAFAVG
Sbjct: 98  NLISKFGMDKAKPKRTPTTTHLKMTKDTTGEKVDSSLHQSIIRSLLYLTASRPDIAFAVG 157

Query: 134 LCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWA 185
           +CARY+ADPRTSHL++ KRILKY+ STF YGLWYT+DTTG L+G +   W+
Sbjct: 158 VCARYRADPRTSHLHSTKRILKYITSTFKYGLWYTFDTTGVLVGVTGRCWS 208

BLAST of Cmc09g0240991 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-23
Identity = 63/185 (34.05%), Postives = 100/185 (54.05%), Query Frame = 0

Query: 1    MFMYRQGTEFLIVQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQE 60
            +F+ ++G   + + +YVDDI+  G     +   +D +   F +    EL +FLG + K+ 
Sbjct: 1135 LFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRV 1194

Query: 61   KTRIFFSQEKYAKNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLY 120
             T +  SQ +Y  +L+++  M  AKP  T  A   K++     +  D   YR I+ SL Y
Sbjct: 1195 PTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQY 1254

Query: 121  LTASRPDIAFAVGLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSD 180
            L  +RPDI++AV   +++   P   HL   KRIL+Y+  T N+G++     T +L  YSD
Sbjct: 1255 LAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSD 1314

Query: 181  ADWAG 186
            ADWAG
Sbjct: 1315 ADWAG 1319

BLAST of Cmc09g0240991 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-22
Identity = 60/185 (32.43%), Postives = 101/185 (54.59%), Query Frame = 0

Query: 1    MFMYRQGTEFLIVQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQE 60
            +F+ ++G   + + +YVDDI+  G  +  ++  +D +   F +    +L +FLG + K+ 
Sbjct: 1118 LFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRV 1177

Query: 61   KTRIFFSQEKYAKNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLY 120
               +  SQ +Y  +L+++  M  AKP  T  AT  K+T     +  D   YR I+ SL Y
Sbjct: 1178 PQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQY 1237

Query: 121  LTASRPDIAFAVGLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSD 180
            L  +RPD+++AV   ++Y   P   H    KR+L+Y+  T ++G++     T +L  YSD
Sbjct: 1238 LAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSD 1297

Query: 181  ADWAG 186
            ADWAG
Sbjct: 1298 ADWAG 1302

BLAST of Cmc09g0240991 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-22
Identity = 59/179 (32.96%), Postives = 100/179 (55.87%), Query Frame = 0

Query: 15  IYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAKN 74
           +YVDDI+  G+S+  +   + Q+   F M  +  + +FLG QIK   + +F SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 75  LISKFAMDKAKPKRTLAATHLKMTKDIIGEKV-DTNLYRSIISSLLYLTASRPDIAFAVG 134
           +++   M   KP  T     LK+   +   K  D + +RSI+ +L YLT +RPDI++AV 
Sbjct: 65  ILNNAGMLDCKPMST--PLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 135 LCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAGCSMIKRA 193
           +  +   +P  +     KR+L+YV  T  +GL+   ++   +  + D+DWAGC+  +R+
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181

BLAST of Cmc09g0240991 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-17
Identity = 61/185 (32.97%), Postives = 98/185 (52.97%), Query Frame = 0

Query: 10   FLIVQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKT--RIFFS 69
            F+I+ +YVDD++  G     + +    +   F+M  +      LG +I +E+T  +++ S
Sbjct: 1002 FIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLS 1061

Query: 70   QEKYAKNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTN------LYRSIISSLLY- 129
            QEKY + ++ +F M  AKP  T  A HLK++K +    V+         Y S + SL+Y 
Sbjct: 1062 QEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYA 1121

Query: 130  LTASRPDIAFAVGLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSD 186
            +  +RPDIA AVG+ +R+  +P   H    K IL+Y+  T    L +   +   L GY+D
Sbjct: 1122 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-GSDPILKGYTD 1181

BLAST of Cmc09g0240991 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-12
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 111 YRSIISSLLYL-TASRPDIAFAVGLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTY 170
           Y S + +++YL   +RPD+A AVG+ +++ +DP  +H    KR+L+Y+ ST  YGL +T 
Sbjct: 6   YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTR 65

Query: 171 DTTGTLIGYSDADWAG 186
             T  L+GYSDADWAG
Sbjct: 66  AGTAKLVGYSDADWAG 81

BLAST of Cmc09g0240991 vs. ExPASy TrEMBL
Match: A0A5D3BEA0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00260 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.4e-72
Identity = 140/171 (81.87%), Postives = 150/171 (87.72%), Query Frame = 0

Query: 15  IYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAKN 74
           +YVDDIIFGGTSS YVEQFV QM  EFEMSMV EL+FFLGFQIKQE T IFFSQ+KY KN
Sbjct: 1   MYVDDIIFGGTSSVYVEQFVAQMNREFEMSMVGELTFFLGFQIKQENTGIFFSQKKYTKN 60

Query: 75  LISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAVGL 134
           LISKF MDKA+PKRT AA HLKMTKD  GEKVDTNLYRSII SLLYLTASR DIAF VG+
Sbjct: 61  LISKFGMDKARPKRTPAAIHLKMTKDTNGEKVDTNLYRSIIGSLLYLTASRLDIAFVVGV 120

Query: 135 CARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAG 186
           CARYQADP TSHL++AKRILKY+  TFNYG+WYTYDTTGTL+GY DADW G
Sbjct: 121 CARYQADPHTSHLHSAKRILKYISGTFNYGIWYTYDTTGTLVGYCDADWVG 171

BLAST of Cmc09g0240991 vs. ExPASy TrEMBL
Match: A0A5D3DA69 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00200 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.4e-72
Identity = 139/183 (75.96%), Postives = 161/183 (87.98%), Query Frame = 0

Query: 13  VQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYA 72
           VQIYV+DIIFGGTSSAYV+QFV+QMKGEFEMSMV EL+FF+GFQIKQ++T IFFSQEKYA
Sbjct: 147 VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIGFQIKQDETGIFFSQEKYA 206

Query: 73  KNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAV 132
           KNLISKF MDKAKPK+T AATHLK+TKD   E+VD++LYRSII SLL L ASRPDIAFAV
Sbjct: 207 KNLISKFRMDKAKPKQTPAATHLKLTKDATEEQVDSSLYRSIIGSLLNLIASRPDIAFAV 266

Query: 133 GLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAGCSMIKRA 192
           G+CARYQADPRTSHL +AKRILKY++ T N+ LWYT+DTTG L+ Y DADW GCS  +++
Sbjct: 267 GMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTTGVLVRYCDADWVGCSDDRKS 326

Query: 193 HLE 196
             E
Sbjct: 327 TYE 329

BLAST of Cmc09g0240991 vs. ExPASy TrEMBL
Match: A0A5A7TAN0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003070 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.6e-72
Identity = 140/171 (81.87%), Postives = 150/171 (87.72%), Query Frame = 0

Query: 15  IYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAKN 74
           +YVDDIIFGGTSS YVEQFV QM  EFEMSMV EL+FFLGFQIKQE T IFFSQ+KY KN
Sbjct: 1   MYVDDIIFGGTSSVYVEQFVAQMNREFEMSMVGELTFFLGFQIKQENTGIFFSQKKYTKN 60

Query: 75  LISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAVGL 134
           LISKF MDKA+PKRT AATHLKMTKD  GEKVDTNLYRSII SLLYL ASRPDIAFAVG+
Sbjct: 61  LISKFGMDKARPKRTPAATHLKMTKDTNGEKVDTNLYRSIIGSLLYLIASRPDIAFAVGV 120

Query: 135 CARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAG 186
            ARYQADP  SHL++AKRILKY+  TFNYG+WYTYDTTGTL+GY DADW G
Sbjct: 121 YARYQADPHMSHLHSAKRILKYISDTFNYGIWYTYDTTGTLVGYCDADWVG 171

BLAST of Cmc09g0240991 vs. ExPASy TrEMBL
Match: A0A5A7UJW3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00540 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.6e-68
Identity = 136/175 (77.71%), Postives = 150/175 (85.71%), Query Frame = 0

Query: 13  VQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYA 72
           VQIYVDDIIFGGTSS YVEQFV+QMKGEFE+SMV EL+FFLGFQIKQ KTRIFFSQEKYA
Sbjct: 342 VQIYVDDIIFGGTSSTYVEQFVNQMKGEFEISMVGELTFFLGFQIKQYKTRIFFSQEKYA 401

Query: 73  KNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAV 132
           KNLISKF MDKAKP         K+TKD   EKVD++LYRSII SLLYLTASRPDIAF V
Sbjct: 402 KNLISKFGMDKAKP---------KLTKDATREKVDSSLYRSIIGSLLYLTASRPDIAFTV 461

Query: 133 GLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAGCS 188
           G+CARYQAD RTSHL++AKRILKY++ T N+GLWYT+DTT  L+GY DADWA CS
Sbjct: 462 GVCARYQADRRTSHLHSAKRILKYIIGTCNFGLWYTFDTTEVLVGYCDADWAVCS 507

BLAST of Cmc09g0240991 vs. ExPASy TrEMBL
Match: A0A5A7VCX5 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00340 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65
Identity = 129/171 (75.44%), Postives = 148/171 (86.55%), Query Frame = 0

Query: 14  QIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAK 73
           +IYVDDIIF  TS  YV +FV QMKGEFEM+MV EL+FFLGFQI+QE+T IFFSQEKYAK
Sbjct: 38  KIYVDDIIFRRTSLDYVVKFVRQMKGEFEMTMVGELTFFLGFQIRQEETSIFFSQEKYAK 97

Query: 74  NLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYLTASRPDIAFAVG 133
           NLISKF MDKAKPKRT   THLKMTKD  GEKVD++L++SII SLLYLTASRPDIAFAVG
Sbjct: 98  NLISKFGMDKAKPKRTPTTTHLKMTKDTTGEKVDSSLHQSIIRSLLYLTASRPDIAFAVG 157

Query: 134 LCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWA 185
           +CARY+ADPRTSHL++ KRILKY+ STF YGLWYT+DTTG L+G +   W+
Sbjct: 158 VCARYRADPRTSHLHSTKRILKYITSTFKYGLWYTFDTTGVLVGVTGRCWS 208

BLAST of Cmc09g0240991 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-23
Identity = 59/179 (32.96%), Postives = 100/179 (55.87%), Query Frame = 0

Query: 15  IYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEKTRIFFSQEKYAKN 74
           +YVDDI+  G+S+  +   + Q+   F M  +  + +FLG QIK   + +F SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 75  LISKFAMDKAKPKRTLAATHLKMTKDIIGEKV-DTNLYRSIISSLLYLTASRPDIAFAVG 134
           +++   M   KP  T     LK+   +   K  D + +RSI+ +L YLT +RPDI++AV 
Sbjct: 65  ILNNAGMLDCKPMST--PLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 124

Query: 135 LCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDADWAGCSMIKRA 193
           +  +   +P  +     KR+L+YV  T  +GL+   ++   +  + D+DWAGC+  +R+
Sbjct: 125 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181

BLAST of Cmc09g0240991 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-20
Identity = 60/191 (31.41%), Postives = 95/191 (49.74%), Query Frame = 0

Query: 2   FMYRQGTEFLIVQIYVDDIIFGGTSSAYVEQFVDQMKGEFEMSMVWELSFFLGFQIKQEK 61
           F+    T FL V +YVDDII    + A V++   Q+K  F++  +  L +FLG +I +  
Sbjct: 269 FLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSA 328

Query: 62  TRIFFSQEKYAKNLISKFAMDKAKPKRTLAATHLKMTKDIIGEKVDTNLYRSIISSLLYL 121
             I   Q KYA +L+ +  +   KP        +  +    G+ VD   YR +I  L+YL
Sbjct: 329 AGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYL 388

Query: 122 TASRPDIAFAVGLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGYSDA 181
             +R DI+FAV   +++   PR +H     +IL Y+  T   GL+Y+      L  +SDA
Sbjct: 389 QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDA 448

Query: 182 DWAGCSMIKRA 193
            +  C   +R+
Sbjct: 449 SFQSCKDTRRS 459

BLAST of Cmc09g0240991 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 25/74 (33.78%), Postives = 44/74 (59.46%), Query Frame = 0

Query: 119 LYLTASRPDIAFAVGLCARYQADPRTSHLYNAKRILKYVLSTFNYGLWYTYDTTGTLIGY 178
           +YLT +RPD+ FAV   +++ +  RT+ +    ++L YV  T   GL+Y+  +   L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 179 SDADWAGCSMIKRA 193
           +D+DWA C   +R+
Sbjct: 61  ADSDWASCPDTRRS 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ96981.17.0e-7281.87putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0038150.19.2e-7275.96putative mitochondrial protein [Cucumis melo var. makuwa] >TYK20453.1 putative m... [more]
KAA0038409.11.6e-7181.87putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0056162.11.4e-6777.71putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0065488.13.7e-6575.44putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08728.1 putative gag... [more]
Match NameE-valueIdentityDescription
Q94HW23.7e-2334.05Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.8e-2232.43Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P925194.1e-2232.96Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
P109783.9e-1732.97Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P0CV722.9e-1246.05Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P... [more]
Match NameE-valueIdentityDescription
A0A5D3BEA03.4e-7281.87Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3DA694.4e-7275.96Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TAN07.6e-7281.87Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7UJW36.6e-6877.71Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7VCX51.8e-6575.44Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
Match NameE-valueIdentityDescription
ATMG00810.12.9e-2332.96DNA/RNA polymerases superfamily protein [more]
AT4G23160.11.0e-2031.41cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00240.12.0e-0833.78Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..89
e-value: 2.2E-15
score: 56.9
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 84..187
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 84..187
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 10..190

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc09g0240991.1Cmc09g0240991.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding