Cmc09g0240421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0240421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr09: 2537403 .. 2538716 (+)
RNA-Seq Expression	Cmc09g0240421
Synteny	Cmc09g0240421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCTACCGGAATCATACGCCCGAGCGTTAGCCCCTTCTCCAGCCCAGTGATACTAGTCAAGAAGAAGGATGGGGGTTGGAGGTTTTGCGTGGACTACAAGGCGTTAAATCGGGCGACAGTGCCGGACAAGTTTCCCATTCCCATGATAGATGAGCTGCTTGATGAACTACACGGAGCCAGCATCTTCTCCAAGATTGATTTAAAATCGGGTTACCATCAGATCCGAGTTCGGGATGAGGATGTGAAGAAGATCGCTTTCCGGACACACGAGGGACACTACGAATTCATGGTGATGCCTTTCGGGCTTACGAACGCACCAGCTACCTTCCAGGCTCTCATGAATCAGGTTTTTCGCCCCTACTTACGAAAATTTATATTGGTATTCTTTGATGATATTCTGGTATATAGCAAGGATGTGGAATCACACTTGGAGCACCTCTCGATTGTGTTTACGTTGCTGCGAGAACATAGTTTGTTCGCAAACCGAAAGAAATGTCATTTTGGGAAGGAACGCATTGAATATCTGGGACATTGGGTATCATCCAAAGGAGTGGAAGCTGATAAGGAAAAAATCCGAGCAATGCTGGAGTGGCCAATTCCCAGAAATATTAAAGAACTGAGGGGATTTTTGGGGTTGACGGGCTATTACCGCCGCTTTGTGGCCAATTACGGCACCATTGCAGCACCTCTCACCCGATTGACCAAGAAGAACAACTTCCATTGGACAGCAGAAACCACAGTGGCGTTTGAGCAACTAAAAGCGGCCATGGTTACCCTTCTAGTGCTGGCCTTACCTGATTTTCAGCAACCCTTCGAGTTGGAGACCGACGCATCCGGTTTCGGATTGGGGGCAGTTCTGTCACAGAATAAAAGACCAATTGCTTATTTCAGTCAGAAATTATCGAAAACAGCGAAGGAAAAGTCCGTATATGAGAGGGAGTTAATGGCCATCGTCTTGGCTGTGGAGAAATGGAGGCATAATTTATTGGGGCATCACTTTGTGGTGTTTACCGATCAGAAAGCACTGCGCTACATTTTAGAACAACGGGAACTGATTCCGGGCATACAAAAATGGTTGATGAAGCTCATGGGTTTTTATTTTGAGATCTTCTACCGAGCAGGACCCGAAAACAAGGTCGCGGATGCCTTATCCCGCATTCCAATCGAGGCTCAGCTGAATGTCATTGTGGTTCCTTCCATATTAGATGTGAAGGTGGTGGAAAAGGAGGTTCAGGAAGATGACAAGCTGAAGGAAATATTCGAGAAAGTTTTGACGGATCCCGATAGTAAACACCACAAAGTGTTTTGA

mRNA sequence

ATGCTGGCTACCGGAATCATACGCCCGAGCGTTAGCCCCTTCTCCAGCCCAGTGATACTAGTCAAGAAGAAGGATGGGGGTTGGAGGTTTTGCGTGGACTACAAGGCGTTAAATCGGGCGACAGTGCCGGACAAGTTTCCCATTCCCATGATAGATGAGCTGCTTGATGAACTACACGGAGCCAGCATCTTCTCCAAGATTGATTTAAAATCGGGTTACCATCAGATCCGAGTTCGGGATGAGGATGTGAAGAAGATCGCTTTCCGGACACACGAGGGACACTACGAATTCATGGTGATGCCTTTCGGGCTTACGAACGCACCAGCTACCTTCCAGGCTCTCATGAATCAGGTTTTTCGCCCCTACTTACGAAAATTTATATTGGTATTCTTTGATGATATTCTGGTATATAGCAAGGATGTGGAATCACACTTGGAGCACCTCTCGATTGTGTTTACGTTGCTGCGAGAACATAGTTTGTTCGCAAACCGAAAGAAATGTCATTTTGGGAAGGAACGCATTGAATATCTGGGACATTGGGTATCATCCAAAGGAGTGGAAGCTGATAAGGAAAAAATCCGAGCAATGCTGGAGTGGCCAATTCCCAGAAATATTAAAGAACTGAGGGGATTTTTGGGGTTGACGGGCTATTACCGCCGCTTTGTGGCCAATTACGGCACCATTGCAGCACCTCTCACCCGATTGACCAAGAAGAACAACTTCCATTGGACAGCAGAAACCACAGTGGCGTTTGAGCAACTAAAAGCGGCCATGGTTACCCTTCTAGTGCTGGCCTTACCTGATTTTCAGCAACCCTTCGAGTTGGAGACCGACGCATCCGGTTTCGGATTGGGGGCAGTTCTGTCACAGAATAAAAGACCAATTGCTTATTTCAGTCAGAAATTATCGAAAACAGCGAAGGAAAAGTCCGTATATGAGAGGGAGTTAATGGCCATCGTCTTGGCTGTGGAGAAATGGAGGCATAATTTATTGGGGCATCACTTTGTGGTGTTTACCGATCAGAAAGCACTGCGCTACATTTTAGAACAACGGGAACTGATTCCGGGCATACAAAAATGGTTGATGAAGCTCATGGGTTTTTATTTTGAGATCTTCTACCGAGCAGGACCCGAAAACAAGGTCGCGGATGCCTTATCCCGCATTCCAATCGAGGCTCAGCTGAATGTCATTGTGGTTCCTTCCATATTAGATGTGAAGGTGGTGGAAAAGGAGGTTCAGGAAGATGACAAGCTGAAGGAAATATTCGAGAAAGTTTTGACGGATCCCGATAGTAAACACCACAAAGTGTTTTGA

Coding sequence (CDS)

ATGCTGGCTACCGGAATCATACGCCCGAGCGTTAGCCCCTTCTCCAGCCCAGTGATACTAGTCAAGAAGAAGGATGGGGGTTGGAGGTTTTGCGTGGACTACAAGGCGTTAAATCGGGCGACAGTGCCGGACAAGTTTCCCATTCCCATGATAGATGAGCTGCTTGATGAACTACACGGAGCCAGCATCTTCTCCAAGATTGATTTAAAATCGGGTTACCATCAGATCCGAGTTCGGGATGAGGATGTGAAGAAGATCGCTTTCCGGACACACGAGGGACACTACGAATTCATGGTGATGCCTTTCGGGCTTACGAACGCACCAGCTACCTTCCAGGCTCTCATGAATCAGGTTTTTCGCCCCTACTTACGAAAATTTATATTGGTATTCTTTGATGATATTCTGGTATATAGCAAGGATGTGGAATCACACTTGGAGCACCTCTCGATTGTGTTTACGTTGCTGCGAGAACATAGTTTGTTCGCAAACCGAAAGAAATGTCATTTTGGGAAGGAACGCATTGAATATCTGGGACATTGGGTATCATCCAAAGGAGTGGAAGCTGATAAGGAAAAAATCCGAGCAATGCTGGAGTGGCCAATTCCCAGAAATATTAAAGAACTGAGGGGATTTTTGGGGTTGACGGGCTATTACCGCCGCTTTGTGGCCAATTACGGCACCATTGCAGCACCTCTCACCCGATTGACCAAGAAGAACAACTTCCATTGGACAGCAGAAACCACAGTGGCGTTTGAGCAACTAAAAGCGGCCATGGTTACCCTTCTAGTGCTGGCCTTACCTGATTTTCAGCAACCCTTCGAGTTGGAGACCGACGCATCCGGTTTCGGATTGGGGGCAGTTCTGTCACAGAATAAAAGACCAATTGCTTATTTCAGTCAGAAATTATCGAAAACAGCGAAGGAAAAGTCCGTATATGAGAGGGAGTTAATGGCCATCGTCTTGGCTGTGGAGAAATGGAGGCATAATTTATTGGGGCATCACTTTGTGGTGTTTACCGATCAGAAAGCACTGCGCTACATTTTAGAACAACGGGAACTGATTCCGGGCATACAAAAATGGTTGATGAAGCTCATGGGTTTTTATTTTGAGATCTTCTACCGAGCAGGACCCGAAAACAAGGTCGCGGATGCCTTATCCCGCATTCCAATCGAGGCTCAGCTGAATGTCATTGTGGTTCCTTCCATATTAGATGTGAAGGTGGTGGAAAAGGAGGTTCAGGAAGATGACAAGCTGAAGGAAATATTCGAGAAAGTTTTGACGGATCCCGATAGTAAACACCACAAAGTGTTTTGA

Protein sequence

MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHGASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFRPYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHWVSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNNFHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQKLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKWLMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKEIFEKVLTDPDSKHHKVF

Homology

[Close]

BLAST of Cmc09g0240421 vs. NCBI nr
Match: KAA0056798.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99922.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 753.4 bits (1944), Expect = 1.1e-213
Identity = 382/431 (88.63%), Postives = 393/431 (91.18%), Query Frame = 0


Query: 1   MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
           MLA GIIRPSVSPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDELHG
Sbjct: 81  MLAMGIIRPSVSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELHG 140

Query: 61  ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
           A+IFSKIDLKS YHQIRVRDEDVKK AFRTHEGHYEFMVMPF LTNAPATFQALMNQVFR
Sbjct: 141 ATIFSKIDLKSVYHQIRVRDEDVKKTAFRTHEGHYEFMVMPFDLTNAPATFQALMNQVFR 200

Query: 121 PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
           PYLRKFILVFFDDILVYSKDVESHLEHL+IVFTLLREHSLFANRKKCHFG+E+IEYLGHW
Sbjct: 201 PYLRKFILVFFDDILVYSKDVESHLEHLTIVFTLLREHSLFANRKKCHFGREQIEYLGHW 260

Query: 181 VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
           VSS GVEAD+EKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN+
Sbjct: 261 VSSNGVEADREKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNS 320

Query: 241 FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
           FHWT E T AFEQLK+AMVTL VLALPDFQQ FELETDAS FGLGAVLSQNKRPIAYFSQ
Sbjct: 321 FHWTEEATSAFEQLKSAMVTLPVLALPDFQQQFELETDASRFGLGAVLSQNKRPIAYFSQ 380

Query: 301 KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
           KLS T KEKSVYERELMAIVLAVEKWRH LLGHHFVVFTDQKALRYILEQRELIP     
Sbjct: 381 KLSGTTKEKSVYERELMAIVLAVEKWRHYLLGHHFVVFTDQKALRYILEQRELIP----- 440

Query: 361 LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
                          GPENK ADALSR+P EAQLNVI +PSILDVKVV +EVQEDDKLKE
Sbjct: 441 ---------------GPENKAADALSRVPNEAQLNVIAIPSILDVKVVGREVQEDDKLKE 491

Query: 421 IFEKVLTDPDS 432
           IFEKVLTDPDS
Sbjct: 501 IFEKVLTDPDS 491

[Close]

BLAST of Cmc09g0240421 vs. NCBI nr
Match: TYK21209.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 751.5 bits (1939), Expect = 4.0e-213
Identity = 361/430 (83.95%), Postives = 401/430 (93.26%), Query Frame = 0


Query: 1    MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
            MLA+GIIRPS SPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDEL G
Sbjct: 626  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 685

Query: 61   ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
            ASIFSKIDLKSGYHQIRVRDED+ K AFRTHEGHYEF+VMPFGLTNAPATFQALMNQVFR
Sbjct: 686  ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 745

Query: 121  PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
            PYLRKF+LVFFDDILVYS+DVE+HLEHL++VF LLR+H LFANR+KCHF K+RIEYLGHW
Sbjct: 746  PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 805

Query: 181  VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
            VS+KGVEAD+EKI+AM+EWPIP+NI+ELRGFLGLTGYYRRFVANYG IA PLT+LTKKNN
Sbjct: 806  VSAKGVEADQEKIKAMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNN 865

Query: 241  FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
            F W+ E T AFEQLK AMVTL VLALPDFQ PFE+ETDASG GLGAVL+QNKRPIAYFSQ
Sbjct: 866  FRWSEEATKAFEQLKRAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQ 925

Query: 301  KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
            KLS+TA+EKSVYERELMAIVLAVEKWRH LLGH FVV+TDQKALR+ILEQRE++PG+QKW
Sbjct: 926  KLSETAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQREIVPGVQKW 985

Query: 361  LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
            LMKL+GF FEI YRAGPENK ADALSR+P EA+LN I VPS+LD+ V+EKEVQ D+KLK 
Sbjct: 986  LMKLIGFDFEIRYRAGPENKAADALSRMPFEAELNAITVPSLLDITVIEKEVQADEKLKA 1045

Query: 421  IFEKVLTDPD 431
            IF++++ DPD
Sbjct: 1046 IFDRIVADPD 1055

[Close]

BLAST of Cmc09g0240421 vs. NCBI nr
Match: TYK23724.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 751.5 bits (1939), Expect = 4.0e-213
Identity = 361/430 (83.95%), Postives = 401/430 (93.26%), Query Frame = 0


Query: 1    MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
            MLA+GIIRPS SPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDEL G
Sbjct: 626  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 685

Query: 61   ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
            ASIFSKIDLKSGYHQIRVRDED+ K AFRTHEGHYEF+VMPFGLTNAPATFQALMNQVFR
Sbjct: 686  ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 745

Query: 121  PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
            PYLRKF+LVFFDDILVYS+DVE+HLEHL++VF LLR+H LFANR+KCHF K+RIEYLGHW
Sbjct: 746  PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 805

Query: 181  VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
            VS+KGVEAD+EKI+AM+EWPIP+NI+ELRGFLGLTGYYRRFVANYG IA PLT+LTKKNN
Sbjct: 806  VSAKGVEADQEKIKAMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNN 865

Query: 241  FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
            F W+ E T AFEQLK AMVTL VLALPDFQ PFE+ETDASG GLGAVL+QNKRPIAYFSQ
Sbjct: 866  FRWSEEATKAFEQLKRAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQ 925

Query: 301  KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
            KLS+TA+EKSVYERELMAIVLAVEKWRH LLGH FVV+TDQKALR+ILEQRE++PG+QKW
Sbjct: 926  KLSETAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQREIVPGVQKW 985

Query: 361  LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
            LMKL+GF FEI YRAGPENK ADALSR+P EA+LN I VPS+LD+ V+EKEVQ D+KLK 
Sbjct: 986  LMKLIGFDFEIRYRAGPENKAADALSRMPFEAELNAITVPSLLDITVIEKEVQADEKLKA 1045

Query: 421  IFEKVLTDPD 431
            IF++++ DPD
Sbjct: 1046 IFDRIVADPD 1055

[Close]

BLAST of Cmc09g0240421 vs. NCBI nr
Match: TYK26407.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 751.5 bits (1939), Expect = 4.0e-213
Identity = 361/430 (83.95%), Postives = 401/430 (93.26%), Query Frame = 0


Query: 1    MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
            MLA+GIIRPS SPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDEL G
Sbjct: 626  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 685

Query: 61   ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
            ASIFSKIDLKSGYHQIRVRDED+ K AFRTHEGHYEF+VMPFGLTNAPATFQALMNQVFR
Sbjct: 686  ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 745

Query: 121  PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
            PYLRKF+LVFFDDILVYS+DVE+HLEHL++VF LLR+H LFANR+KCHF K+RIEYLGHW
Sbjct: 746  PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 805

Query: 181  VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
            VS+KGVEAD+EKI+AM+EWPIP+NI+ELRGFLGLTGYYRRFVANYG IA PLT+LTKKNN
Sbjct: 806  VSAKGVEADQEKIKAMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNN 865

Query: 241  FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
            F W+ E T AFEQLK AMVTL VLALPDFQ PFE+ETDASG GLGAVL+QNKRPIAYFSQ
Sbjct: 866  FRWSEEATKAFEQLKRAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQ 925

Query: 301  KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
            KLS+TA+EKSVYERELMAIVLAVEKWRH LLGH FVV+TDQKALR+ILEQRE++PG+QKW
Sbjct: 926  KLSETAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQREIVPGVQKW 985

Query: 361  LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
            LMKL+GF FEI YRAGPENK ADALSR+P EA+LN I VPS+LD+ V+EKEVQ D+KLK 
Sbjct: 986  LMKLIGFDFEIRYRAGPENKAADALSRMPFEAELNAITVPSLLDITVIEKEVQADEKLKA 1045

Query: 421  IFEKVLTDPD 431
            IF++++ DPD
Sbjct: 1046 IFDRIVADPD 1055

[Close]

BLAST of Cmc09g0240421 vs. NCBI nr
Match: KAA0033702.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 750.4 bits (1936), Expect = 9.0e-213
Identity = 360/430 (83.72%), Postives = 401/430 (93.26%), Query Frame = 0


Query: 1   MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
           +LA+GIIRPS SPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDEL G
Sbjct: 264 LLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 323

Query: 61  ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
           ASIFSKIDLKSGYHQIRVRDED+ K AFRTHEGHYEF+VMPFGLTNAPATFQALMNQVFR
Sbjct: 324 ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 383

Query: 121 PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
           PYLRKF+LVFFDDILVYS+DVE+HLEHL++VF LLR+H LFANR+KCHF K+RIEYLGHW
Sbjct: 384 PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 443

Query: 181 VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
           VS+KGVEAD+EKI+AM+EWPIP+NI+ELRGFLGLTGYYR+FVANYG IA PLT+LTKKNN
Sbjct: 444 VSAKGVEADQEKIKAMIEWPIPKNIRELRGFLGLTGYYRQFVANYGAIATPLTKLTKKNN 503

Query: 241 FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
           F W+ E T AFEQLK AMVTL VLALPDFQ PFE+ETDASG GLGAVL+QNKRPIAYFSQ
Sbjct: 504 FRWSEEATKAFEQLKRAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQ 563

Query: 301 KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
           KLSKTA+EKSVYERELMAIVLAVEKWRH LLGH FVV+TDQKALR+ILEQRE++PG+QKW
Sbjct: 564 KLSKTAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQREIVPGVQKW 623

Query: 361 LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
           LMKL+GF FEI YRAGPENK ADALSR+P EA+LN I VPS+LD+ V+EKEVQ D+KLK 
Sbjct: 624 LMKLIGFDFEIRYRAGPENKAADALSRMPFEAELNAITVPSLLDITVIEKEVQADEKLKA 683

Query: 421 IFEKVLTDPD 431
           IF++++ DPD
Sbjct: 684 IFDRIVADPD 693

[Close]

BLAST of Cmc09g0240421 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.1e-93
Identity = 178/398 (44.72%), Postives = 251/398 (63.07%), Query Frame = 0


Query: 1   MLATGIIRPSVSPFSSPVILVKKKDGG-----WRFCVDYKALNRATVPDKFPIPMIDELL 60
           ML  G+IR S SP++SP  +V KK        +R  +DY+ LN  T+PD++PIP +DE+L
Sbjct: 229 MLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEIL 288

Query: 61  DELHGASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALM 120
            +L     F+ IDL  G+HQI + +E + K AF T  GHYE++ MPFGL NAPATFQ  M
Sbjct: 289 GKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCM 348

Query: 121 NQVFRPYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIE 180
           N + RP L K  LV+ DDI+++S  +  HL  + +VFT L + +L     KC F K+   
Sbjct: 349 NNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEAN 408

Query: 181 YLGHWVSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRL 240
           +LGH V+  G++ +  K++A++ +PIP   KE+R FLGLTGYYR+F+ NY  IA P+T  
Sbjct: 409 FLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSC 468

Query: 241 TKKNNFHWT--AETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKR 300
            KK     T   E   AFE+LKA ++   +L LPDF++ F L TDAS   LGAVLSQN  
Sbjct: 469 LKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGH 528

Query: 301 PIAYFSQKLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQREL 360
           PI++ S+ L+      S  E+EL+AIV A + +RH LLG  F++ +D + LR++   +E 
Sbjct: 529 PISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEP 588

Query: 361 IPGIQKWLMKLMGFYFEIFYRAGPENKVADALSRIPIE 392
              +++W ++L  + F+I Y  G EN VADALSRI IE
Sbjct: 589 GAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIE 626

[Close]

BLAST of Cmc09g0240421 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.6e-90
Identity = 177/398 (44.47%), Postives = 249/398 (62.56%), Query Frame = 0


Query: 1   MLATGIIRPSVSPFSSPVILVKKKDGG-----WRFCVDYKALNRATVPDKFPIPMIDELL 60
           ML  GIIR S SP++SP+ +V KK        +R  +DY+ LN  TV D+ PIP +DE+L
Sbjct: 230 MLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEIL 289

Query: 61  DELHGASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALM 120
            +L   + F+ IDL  G+HQI +  E V K AF T  GHYE++ MPFGL NAPATFQ  M
Sbjct: 290 GKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCM 349

Query: 121 NQVFRPYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIE 180
           N + RP L K  LV+ DDI+V+S  ++ HL+ L +VF  L + +L     KC F K+   
Sbjct: 350 NDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETT 409

Query: 181 YLGHWVSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRL 240
           +LGH ++  G++ + EKI A+ ++PIP   KE++ FLGLTGYYR+F+ N+  IA P+T+ 
Sbjct: 410 FLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKC 469

Query: 241 TKKNNFHWTA--ETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKR 300
            KKN    T   E   AF++LK  +    +L +PDF + F L TDAS   LGAVLSQ+  
Sbjct: 470 LKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGH 529

Query: 301 PIAYFSQKLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQREL 360
           P++Y S+ L++     S  E+EL+AIV A + +RH LLG HF + +D + L ++   ++ 
Sbjct: 530 PLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDP 589

Query: 361 IPGIQKWLMKLMGFYFEIFYRAGPENKVADALSRIPIE 392
              + +W +KL  F F+I Y  G EN VADALSRI +E
Sbjct: 590 NSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLE 627

[Close]

BLAST of Cmc09g0240421 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.8e-84
Identity = 167/417 (40.05%), Postives = 259/417 (62.11%), Query Frame = 0


Query: 1   MLATGIIRPSVSPFSSPVILVKKK-----DGGWRFCVDYKALNRATVPDKFPIPMIDELL 60
           +L  GIIRPS SP++SP+ +V KK     +  +R  VD+K LN  T+PD +PIP I+  L
Sbjct: 146 LLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATL 205

Query: 61  DELHGASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALM 120
             L  A  F+ +DL SG+HQI +++ D+ K AF T  G YEF+ +PFGL NAPA FQ ++
Sbjct: 206 ASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMI 265

Query: 121 NQVFRPYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIE 180
           + + R ++ K   V+ DDI+V+S+D ++H ++L +V   L + +L  N +K HF   ++E
Sbjct: 266 DDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVE 325

Query: 181 YLGHWVSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRL 240
           +LG+ V++ G++AD +K+RA+ E P P ++KEL+ FLG+T YYR+F+ +Y  +A PLT L
Sbjct: 326 FLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNL 385

Query: 241 TK----------KNNFHWTAETTV--AFEQLKAAMVTLLVLALPDFQQPFELETDASGFG 300
           T+           +    T + T   +F  LK+ + +  +LA P F +PF L TDAS + 
Sbjct: 386 TRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWA 445

Query: 301 LGAVLSQN----KRPIAYFSQKLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFV-VF 360
           +GAVLSQ+     RPIAY S+ L+KT +  +  E+E++AI+ +++  R  L G   + V+
Sbjct: 446 IGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVY 505

Query: 361 TDQKALRYILEQRELIPGIQKWLMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLN 396
           TD + L + L  R     +++W  ++  +  E+ Y+ G  N VADALSRIP   QLN
Sbjct: 506 TDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIP--PQLN 560

[Close]

BLAST of Cmc09g0240421 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 2.1e-79
Identity = 163/393 (41.48%), Postives = 230/393 (58.52%), Query Frame = 0


Query: 1    MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
            +L    I PS SP SSPV+LV KKDG +R CVDY+ LN+AT+ D FP+P ID LL  +  
Sbjct: 645  LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 704

Query: 61   ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
            A IF+ +DL SGYHQI +  +D  K AF T  G YE+ VMPFGL NAP+TF   M   FR
Sbjct: 705  AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFR 764

Query: 121  PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
                +F+ V+ DDIL++S+  E H +HL  V   L+  +L   +KKC F  E  E+LG+ 
Sbjct: 765  DL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYS 824

Query: 181  VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
            +  + +   + K  A+ ++P P+ +K+ + FLG+  YYRRF+ N   IA P+ +L   + 
Sbjct: 825  IGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDK 884

Query: 241  FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQ--NKRP---- 300
              WT +   A E+LKAA+    VL   + +  + L TDAS  G+GAVL +  NK      
Sbjct: 885  SQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGV 944

Query: 301  IAYFSQKLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELI 360
            + YFS+ L    K     E EL+ I+ A+  +R+ L G HF + TD  +L  +  + E  
Sbjct: 945  VGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPA 1004

Query: 361  PGIQKWLMKLMGFYFEIFYRAGPENKVADALSR 388
              +Q+WL  L  + F + Y AGP+N VADA+SR
Sbjct: 1005 RRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1034

[Close]

BLAST of Cmc09g0240421 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 294.3 bits (752), Expect = 2.3e-78
Identity = 161/393 (40.97%), Postives = 229/393 (58.27%), Query Frame = 0


Query: 1    MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
            +L    I PS SP SSPV+LV KKDG +R CVDY+ LN+AT+ D FP+P ID LL  +  
Sbjct: 619  LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 678

Query: 61   ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
            A IF+ +DL SGYHQI +  +D  K AF T  G YE+ VMPFGL NAP+TF   M   FR
Sbjct: 679  AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFR 738

Query: 121  PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
                +F+ V+ DDIL++S+  E H +HL  V   L+  +L   +KKC F  E  E+LG+ 
Sbjct: 739  DL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYS 798

Query: 181  VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
            +  + +   + K  A+ ++P P+ +K+ + FLG+  YYRRF+ N   IA P+ +L   + 
Sbjct: 799  IGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDK 858

Query: 241  FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQ--NKRP---- 300
              WT +   A ++LK A+    VL   + +  + L TDAS  G+GAVL +  NK      
Sbjct: 859  SQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGV 918

Query: 301  IAYFSQKLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELI 360
            + YFS+ L    K     E EL+ I+ A+  +R+ L G HF + TD  +L  +  + E  
Sbjct: 919  VGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPA 978

Query: 361  PGIQKWLMKLMGFYFEIFYRAGPENKVADALSR 388
              +Q+WL  L  + F + Y AGP+N VADA+SR
Sbjct: 979  RRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1008

[Close]

BLAST of Cmc09g0240421 vs. ExPASy TrEMBL
Match: A0A5A7UNX8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00450 PE=4 SV=1)

HSP 1 Score: 753.4 bits (1944), Expect = 5.1e-214
Identity = 382/431 (88.63%), Postives = 393/431 (91.18%), Query Frame = 0


Query: 1   MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
           MLA GIIRPSVSPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDELHG
Sbjct: 81  MLAMGIIRPSVSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELHG 140

Query: 61  ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
           A+IFSKIDLKS YHQIRVRDEDVKK AFRTHEGHYEFMVMPF LTNAPATFQALMNQVFR
Sbjct: 141 ATIFSKIDLKSVYHQIRVRDEDVKKTAFRTHEGHYEFMVMPFDLTNAPATFQALMNQVFR 200

Query: 121 PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
           PYLRKFILVFFDDILVYSKDVESHLEHL+IVFTLLREHSLFANRKKCHFG+E+IEYLGHW
Sbjct: 201 PYLRKFILVFFDDILVYSKDVESHLEHLTIVFTLLREHSLFANRKKCHFGREQIEYLGHW 260

Query: 181 VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
           VSS GVEAD+EKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKN+
Sbjct: 261 VSSNGVEADREKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNS 320

Query: 241 FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
           FHWT E T AFEQLK+AMVTL VLALPDFQQ FELETDAS FGLGAVLSQNKRPIAYFSQ
Sbjct: 321 FHWTEEATSAFEQLKSAMVTLPVLALPDFQQQFELETDASRFGLGAVLSQNKRPIAYFSQ 380

Query: 301 KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
           KLS T KEKSVYERELMAIVLAVEKWRH LLGHHFVVFTDQKALRYILEQRELIP     
Sbjct: 381 KLSGTTKEKSVYERELMAIVLAVEKWRHYLLGHHFVVFTDQKALRYILEQRELIP----- 440

Query: 361 LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
                          GPENK ADALSR+P EAQLNVI +PSILDVKVV +EVQEDDKLKE
Sbjct: 441 ---------------GPENKAADALSRVPNEAQLNVIAIPSILDVKVVGREVQEDDKLKE 491

Query: 421 IFEKVLTDPDS 432
           IFEKVLTDPDS
Sbjct: 501 IFEKVLTDPDS 491

[Close]

BLAST of Cmc09g0240421 vs. ExPASy TrEMBL
Match: A0A5D3DRT3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00710 PE=4 SV=1)

HSP 1 Score: 751.5 bits (1939), Expect = 1.9e-213
Identity = 361/430 (83.95%), Postives = 401/430 (93.26%), Query Frame = 0


Query: 1    MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
            MLA+GIIRPS SPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDEL G
Sbjct: 626  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 685

Query: 61   ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
            ASIFSKIDLKSGYHQIRVRDED+ K AFRTHEGHYEF+VMPFGLTNAPATFQALMNQVFR
Sbjct: 686  ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 745

Query: 121  PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
            PYLRKF+LVFFDDILVYS+DVE+HLEHL++VF LLR+H LFANR+KCHF K+RIEYLGHW
Sbjct: 746  PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 805

Query: 181  VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
            VS+KGVEAD+EKI+AM+EWPIP+NI+ELRGFLGLTGYYRRFVANYG IA PLT+LTKKNN
Sbjct: 806  VSAKGVEADQEKIKAMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNN 865

Query: 241  FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
            F W+ E T AFEQLK AMVTL VLALPDFQ PFE+ETDASG GLGAVL+QNKRPIAYFSQ
Sbjct: 866  FRWSEEATKAFEQLKRAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQ 925

Query: 301  KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
            KLS+TA+EKSVYERELMAIVLAVEKWRH LLGH FVV+TDQKALR+ILEQRE++PG+QKW
Sbjct: 926  KLSETAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQREIVPGVQKW 985

Query: 361  LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
            LMKL+GF FEI YRAGPENK ADALSR+P EA+LN I VPS+LD+ V+EKEVQ D+KLK 
Sbjct: 986  LMKLIGFDFEIRYRAGPENKAADALSRMPFEAELNAITVPSLLDITVIEKEVQADEKLKA 1045

Query: 421  IFEKVLTDPD 431
            IF++++ DPD
Sbjct: 1046 IFDRIVADPD 1055

[Close]

BLAST of Cmc09g0240421 vs. ExPASy TrEMBL
Match: A0A5D3DD68 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00150 PE=4 SV=1)

HSP 1 Score: 751.5 bits (1939), Expect = 1.9e-213
Identity = 361/430 (83.95%), Postives = 401/430 (93.26%), Query Frame = 0


Query: 1    MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
            MLA+GIIRPS SPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDEL G
Sbjct: 626  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 685

Query: 61   ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
            ASIFSKIDLKSGYHQIRVRDED+ K AFRTHEGHYEF+VMPFGLTNAPATFQALMNQVFR
Sbjct: 686  ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 745

Query: 121  PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
            PYLRKF+LVFFDDILVYS+DVE+HLEHL++VF LLR+H LFANR+KCHF K+RIEYLGHW
Sbjct: 746  PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 805

Query: 181  VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
            VS+KGVEAD+EKI+AM+EWPIP+NI+ELRGFLGLTGYYRRFVANYG IA PLT+LTKKNN
Sbjct: 806  VSAKGVEADQEKIKAMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNN 865

Query: 241  FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
            F W+ E T AFEQLK AMVTL VLALPDFQ PFE+ETDASG GLGAVL+QNKRPIAYFSQ
Sbjct: 866  FRWSEEATKAFEQLKRAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQ 925

Query: 301  KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
            KLS+TA+EKSVYERELMAIVLAVEKWRH LLGH FVV+TDQKALR+ILEQRE++PG+QKW
Sbjct: 926  KLSETAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQREIVPGVQKW 985

Query: 361  LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
            LMKL+GF FEI YRAGPENK ADALSR+P EA+LN I VPS+LD+ V+EKEVQ D+KLK 
Sbjct: 986  LMKLIGFDFEIRYRAGPENKAADALSRMPFEAELNAITVPSLLDITVIEKEVQADEKLKA 1045

Query: 421  IFEKVLTDPD 431
            IF++++ DPD
Sbjct: 1046 IFDRIVADPD 1055

[Close]

BLAST of Cmc09g0240421 vs. ExPASy TrEMBL
Match: A0A5D3DJA9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00370 PE=4 SV=1)

HSP 1 Score: 751.5 bits (1939), Expect = 1.9e-213
Identity = 361/430 (83.95%), Postives = 401/430 (93.26%), Query Frame = 0


Query: 1    MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
            MLA+GIIRPS SPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDEL G
Sbjct: 626  MLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 685

Query: 61   ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
            ASIFSKIDLKSGYHQIRVRDED+ K AFRTHEGHYEF+VMPFGLTNAPATFQALMNQVFR
Sbjct: 686  ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 745

Query: 121  PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
            PYLRKF+LVFFDDILVYS+DVE+HLEHL++VF LLR+H LFANR+KCHF K+RIEYLGHW
Sbjct: 746  PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 805

Query: 181  VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
            VS+KGVEAD+EKI+AM+EWPIP+NI+ELRGFLGLTGYYRRFVANYG IA PLT+LTKKNN
Sbjct: 806  VSAKGVEADQEKIKAMIEWPIPKNIRELRGFLGLTGYYRRFVANYGAIATPLTKLTKKNN 865

Query: 241  FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
            F W+ E T AFEQLK AMVTL VLALPDFQ PFE+ETDASG GLGAVL+QNKRPIAYFSQ
Sbjct: 866  FRWSEEATKAFEQLKRAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQ 925

Query: 301  KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
            KLS+TA+EKSVYERELMAIVLAVEKWRH LLGH FVV+TDQKALR+ILEQRE++PG+QKW
Sbjct: 926  KLSETAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQREIVPGVQKW 985

Query: 361  LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
            LMKL+GF FEI YRAGPENK ADALSR+P EA+LN I VPS+LD+ V+EKEVQ D+KLK 
Sbjct: 986  LMKLIGFDFEIRYRAGPENKAADALSRMPFEAELNAITVPSLLDITVIEKEVQADEKLKA 1045

Query: 421  IFEKVLTDPD 431
            IF++++ DPD
Sbjct: 1046 IFDRIVADPD 1055

[Close]

BLAST of Cmc09g0240421 vs. ExPASy TrEMBL
Match: A0A5A7SR72 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001730 PE=4 SV=1)

HSP 1 Score: 750.4 bits (1936), Expect = 4.3e-213
Identity = 360/430 (83.72%), Postives = 401/430 (93.26%), Query Frame = 0


Query: 1   MLATGIIRPSVSPFSSPVILVKKKDGGWRFCVDYKALNRATVPDKFPIPMIDELLDELHG 60
           +LA+GIIRPS SPFSSPVILVKKKDGGWRFCVDY+ALNRATVPDKFPIPMIDELLDEL G
Sbjct: 264 LLASGIIRPSTSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMIDELLDELSG 323

Query: 61  ASIFSKIDLKSGYHQIRVRDEDVKKIAFRTHEGHYEFMVMPFGLTNAPATFQALMNQVFR 120
           ASIFSKIDLKSGYHQIRVRDED+ K AFRTHEGHYEF+VMPFGLTNAPATFQALMNQVFR
Sbjct: 324 ASIFSKIDLKSGYHQIRVRDEDISKTAFRTHEGHYEFLVMPFGLTNAPATFQALMNQVFR 383

Query: 121 PYLRKFILVFFDDILVYSKDVESHLEHLSIVFTLLREHSLFANRKKCHFGKERIEYLGHW 180
           PYLRKF+LVFFDDILVYS+DVE+HLEHL++VF LLR+H LFANR+KCHF K+RIEYLGHW
Sbjct: 384 PYLRKFLLVFFDDILVYSRDVETHLEHLTMVFQLLRQHCLFANRQKCHFAKDRIEYLGHW 443

Query: 181 VSSKGVEADKEKIRAMLEWPIPRNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNN 240
           VS+KGVEAD+EKI+AM+EWPIP+NI+ELRGFLGLTGYYR+FVANYG IA PLT+LTKKNN
Sbjct: 444 VSAKGVEADQEKIKAMIEWPIPKNIRELRGFLGLTGYYRQFVANYGAIATPLTKLTKKNN 503

Query: 241 FHWTAETTVAFEQLKAAMVTLLVLALPDFQQPFELETDASGFGLGAVLSQNKRPIAYFSQ 300
           F W+ E T AFEQLK AMVTL VLALPDFQ PFE+ETDASG GLGAVL+QNKRPIAYFSQ
Sbjct: 504 FRWSEEATKAFEQLKRAMVTLPVLALPDFQLPFEVETDASGIGLGAVLTQNKRPIAYFSQ 563

Query: 301 KLSKTAKEKSVYERELMAIVLAVEKWRHNLLGHHFVVFTDQKALRYILEQRELIPGIQKW 360
           KLSKTA+EKSVYERELMAIVLAVEKWRH LLGH FVV+TDQKALR+ILEQRE++PG+QKW
Sbjct: 564 KLSKTAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQREIVPGVQKW 623

Query: 361 LMKLMGFYFEIFYRAGPENKVADALSRIPIEAQLNVIVVPSILDVKVVEKEVQEDDKLKE 420
           LMKL+GF FEI YRAGPENK ADALSR+P EA+LN I VPS+LD+ V+EKEVQ D+KLK 
Sbjct: 624 LMKLIGFDFEIRYRAGPENKAADALSRMPFEAELNAITVPSLLDITVIEKEVQADEKLKA 683

Query: 421 IFEKVLTDPD 431
           IF++++ DPD
Sbjct: 684 IFDRIVADPD 693

[Close]

BLAST of Cmc09g0240421 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-36
Identity = 73/131 (55.73%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 145 LEHLSIVFTLLREHSLFANRKKCHFGKERIEYLG--HWVSSKGVEADKEKIRAMLEWPIP 204
           + HL +V  +  +H  +ANRKKC FG+ +I YLG  H +S +GV AD  K+ AM+ WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 205 RNIKELRGFLGLTGYYRRFVANYGTIAAPLTRLTKKNNFHWTAETTVAFEQLKAAMVTLL 264
           +N  ELRGFLGLTGYYRRFV NYG I  PLT L KKN+  WT    +AF+ LK A+ TL 
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

Query: 265 VLALPDFQQPF 274
           VLALPD + PF
Sbjct: 121 VLALPDLKLPF 131

[Close]

BLAST of Cmc09g0240421 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-05
Identity = 20/28 (71.43%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 1  MLATGIIRPSVSPFSSPVILVKKKDGGW 29
          ML   II+PS+SP+SSPV+LV+KKDGGW
Sbjct: 52 MLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Cmc09g0240421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056798.1	1.1e-213	88.63	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYJ99922.1 Tran...	[more]
TYK21209.1	4.0e-213	83.95	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23724.1	4.0e-213	83.95	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK26407.1	4.0e-213	83.95	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033702.1	9.0e-213	83.72	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0240421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	1.1e-93	44.72	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.6e-90	44.47	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	2.8e-84	40.05	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q7LHG5	2.1e-79	41.48	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	2.3e-78	40.97	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc09g0240421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNX8	5.1e-214	88.63	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DRT3	1.9e-213	83.95	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DD68	1.9e-213	83.95	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DJA9	1.9e-213	83.95	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SR72	4.3e-213	83.72	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc09g0240421 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.3e-36	55.73	DNA/RNA polymerases superfamily protein	[more]
ATMG00850.1	1.6e-05	71.43	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 21..181 e-value: 4.9E-32 score: 111.2
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 2..181 score: 15.271305
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 190..271 e-value: 3.1E-28 score: 99.6
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 46..181 e-value: 2.4E-80 score: 270.8
None	No IPR available	GENE3D	3.10.20.370		coord: 272..338 e-value: 1.1E-13 score: 52.9
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..106 e-value: 2.4E-80 score: 270.8
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..401
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..401
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 274..389 e-value: 7.2411E-54 score: 173.833
None	No IPR available	CDD	cd01647	RT_LTR	coord: 5..179 e-value: 1.06723E-93 score: 278.325
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 243..337 e-value: 2.0E-32 score: 111.2
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..374

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0240421.1	Cmc09g0240421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding