Cmc09g0240031 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0240031
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr09: 2127604 .. 2128095 (+)
RNA-Seq Expression	Cmc09g0240031
Synteny	Cmc09g0240031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCATTACAGGTTTGCCTAAGACCTTGAAGGGGTATACGGTCATTTGGGTCTTTGTCAATAGGCTCACGAAATCAGCTCACTTTATTTCTGGAAAATCCACTTACACTGCCAGTAAGTGGGGACAGCTATATATGACCGAGATAGTGAGACCGCATGGAGTACCTATATCCATCGTTTCTGACAGAGATGCTCGTTTCACATCAAAGTTCTGTAAAGGACTTCAGCTTGCATTGAGCACGAGGTTAGATTTTAATACAGCCTTTCATCATCAGACTGATGGTCAAACAGAAAGGTTGAACCAGATTTTAGAAGATATGCTGCGAGCTTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCTCACTTGCACTTGATGGAGTTTGCCTATAATAACAGCTACCAAGCTACCATTAGCATGGCACCTTTTGAGGCTCTGTATGTTAGGTGTTGTAGATCTCTCGTATGTTGGGGTGAGGTTGGTGAGTAG

mRNA sequence

ATGGACTTCATTACAGGTTTGCCTAAGACCTTGAAGGGGTATACGGTCATTTGGGTCTTTGTCAATAGGCTCACGAAATCAGCTCACTTTATTTCTGGAAAATCCACTTACACTGCCAGTAAGTGGGGACAGCTATATATGACCGAGATAGTGAGACCGCATGGAGTACCTATATCCATCGTTTCTGACAGAGATGCTCGTTTCACATCAAAGTTCTGTAAAGGACTTCAGCTTGCATTGAGCACGAGGTTAGATTTTAATACAGCCTTTCATCATCAGACTGATGGTCAAACAGAAAGGTTGAACCAGATTTTAGAAGATATGCTGCGAGCTTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCTCACTTGCACTTGATGGAGTTTGCCTATAATAACAGCTACCAAGCTACCATTAGCATGGCACCTTTTGAGGCTCTGTATGTTAGGTGTTGTAGATCTCTCGTATGTTGGGGTGAGGTTGGTGAGTAG

Coding sequence (CDS)

ATGGACTTCATTACAGGTTTGCCTAAGACCTTGAAGGGGTATACGGTCATTTGGGTCTTTGTCAATAGGCTCACGAAATCAGCTCACTTTATTTCTGGAAAATCCACTTACACTGCCAGTAAGTGGGGACAGCTATATATGACCGAGATAGTGAGACCGCATGGAGTACCTATATCCATCGTTTCTGACAGAGATGCTCGTTTCACATCAAAGTTCTGTAAAGGACTTCAGCTTGCATTGAGCACGAGGTTAGATTTTAATACAGCCTTTCATCATCAGACTGATGGTCAAACAGAAAGGTTGAACCAGATTTTAGAAGATATGCTGCGAGCTTGTGTGCTAGAGTTTTCAGGAAGTTGGGACTCTCACTTGCACTTGATGGAGTTTGCCTATAATAACAGCTACCAAGCTACCATTAGCATGGCACCTTTTGAGGCTCTGTATGTTAGGTGTTGTAGATCTCTCGTATGTTGGGGTGAGGTTGGTGAGTAG

Protein sequence

MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISIVSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE

Homology

[Close]

BLAST of Cmc09g0240031 vs. NCBI nr
Match: KAA0039482.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15237.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.8 bits (813), Expect = 5.5e-83
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 7   LPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISIVSDRDA 66
           LPKTLKGYTVIWV VNRLTKSAHFISGK TYTASKWGQLYMTEIVRPHGVPISIVSDRDA
Sbjct: 190 LPKTLKGYTVIWVVVNRLTKSAHFISGKFTYTASKWGQLYMTEIVRPHGVPISIVSDRDA 249

Query: 67  RFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHL 126
           RFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHL
Sbjct: 250 RFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHL 309

Query: 127 MEFAYNNSYQATISMAPFEALYVRCCRSLVCWGE 161
           MEFAYNNSYQATISMAPFEALYVRCCRS VCWGE
Sbjct: 310 MEFAYNNSYQATISMAPFEALYVRCCRSPVCWGE 343

[Close]

BLAST of Cmc09g0240031 vs. NCBI nr
Match: KAA0032248.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 7.2e-83
Identity = 150/163 (92.02%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFITGLPKTLKGYTVIWV V+RLTKSAHF+ GKSTYTASKWGQLYMTEIVR HGVP+SI
Sbjct: 958  MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1017

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            +SDRDARFTSKF KGLQLAL TRLDFNTAFH QTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1018 ISDRDARFTSKFWKGLQLALGTRLDFNTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1077

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE 164
            DSHLHLMEFAYNNSYQATI MAPFEALY +CCRSLVCWGEVGE
Sbjct: 1078 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSLVCWGEVGE 1120

[Close]

BLAST of Cmc09g0240031 vs. NCBI nr
Match: KAA0040542.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFITGLPKTLKGYTVIWV V+RLTKSAHF+ GKSTYTASKWGQLYMTEIVR HGVP+SI
Sbjct: 907  MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 966

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            +SDRDARFTSKF KGLQLAL TRLDF+TAFH QTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 967  ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1026

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE 164
            DSHLHLMEFAYNNSYQATI MAPFEALY +CCRS VCWGEVGE
Sbjct: 1027 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGE 1069

[Close]

BLAST of Cmc09g0240031 vs. NCBI nr
Match: KAA0032541.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFITGLPKTLKGYTVIWV V+RLTKSAHF+ GKSTYTASKWGQLYMTEIVR HGVP+SI
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            +SDRDARFTSKF KGLQLAL TRLDF+TAFH QTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE 164
            DSHLHLMEFAYNNSYQATI MAPFEALY +CCRS VCWGEVGE
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGE 1308

[Close]

BLAST of Cmc09g0240031 vs. NCBI nr
Match: KAA0063083.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
           MDFITGLPKTLKGYTVIWV V+RLTKSAHF+ GKSTYTASKWGQLYMTEIVR HGVP+SI
Sbjct: 110 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 169

Query: 61  VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
           +SDRDARFTSKF KGLQLAL TRLDF+TAFH QTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 170 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 229

Query: 121 DSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE 164
           DSHLHLMEFAYNNSYQATI MAPFEALY +CCRS VCWGEVGE
Sbjct: 230 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGE 272

[Close]

BLAST of Cmc09g0240031 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 7.4e-22
Identity = 58/145 (40.00%), Postives = 81/145 (55.86%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDF+TGLP T     +I V V+R +K AHFI+ + T  A++   L    I   HG P +I
Sbjct: 1200 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1259

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
             SDRD R T+   + L   L  +   ++A H QTDGQ+ER  Q L  +LRA V     +W
Sbjct: 1260 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNW 1319

Query: 121  DSHLHLMEFAYNNSYQATISMAPFE 146
              +L  +EF YN++   T+  +PFE
Sbjct: 1320 HVYLPQIEFVYNSTPTRTLGKSPFE 1344

[Close]

BLAST of Cmc09g0240031 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-21
Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDF+TGLP T     +I V V+R +K AHFI+ + T  A++   L    I   HG P +I
Sbjct: 1174 MDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTI 1233

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
             SDRD R T+   + L   L  +   ++A H QTDGQ+ER  Q L  +LRA       +W
Sbjct: 1234 TSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNW 1293

Query: 121  DSHLHLMEFAYNNSYQATISMAPFE 146
              +L  +EF YN++   T+  +PFE
Sbjct: 1294 HVYLPQIEFVYNSTPTRTLGKSPFE 1318

[Close]

BLAST of Cmc09g0240031 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-19
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFIT LP++  GY  ++V V+R +K A  +    + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            ++D D  FTS+  K      +  + F+  +  QTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc09g0240031 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-19
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFIT LP++  GY  ++V V+R +K A  +    + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            ++D D  FTS+  K      +  + F+  +  QTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc09g0240031 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.2e-19
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFIT LP++  GY  ++V V+R +K A  +    + TA +  +++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            ++D D  FTS+  K      +  + F+  +  QTDGQTER NQ +E +LR        +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALY 149
              H+ L++ +YNN+  +   M PFE ++
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc09g0240031 vs. ExPASy TrEMBL
Match: A0A5D3CTI4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00080 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.7e-83
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 7   LPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISIVSDRDA 66
           LPKTLKGYTVIWV VNRLTKSAHFISGK TYTASKWGQLYMTEIVRPHGVPISIVSDRDA
Sbjct: 190 LPKTLKGYTVIWVVVNRLTKSAHFISGKFTYTASKWGQLYMTEIVRPHGVPISIVSDRDA 249

Query: 67  RFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHL 126
           RFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHL
Sbjct: 250 RFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSWDSHLHL 309

Query: 127 MEFAYNNSYQATISMAPFEALYVRCCRSLVCWGE 161
           MEFAYNNSYQATISMAPFEALYVRCCRS VCWGE
Sbjct: 310 MEFAYNNSYQATISMAPFEALYVRCCRSPVCWGE 343

[Close]

BLAST of Cmc09g0240031 vs. ExPASy TrEMBL
Match: A0A5A7SNR3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00790 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 150/163 (92.02%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFITGLPKTLKGYTVIWV V+RLTKSAHF+ GKSTYTASKWGQLYMTEIVR HGVP+SI
Sbjct: 958  MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1017

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            +SDRDARFTSKF KGLQLAL TRLDFNTAFH QTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1018 ISDRDARFTSKFWKGLQLALGTRLDFNTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1077

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE 164
            DSHLHLMEFAYNNSYQATI MAPFEALY +CCRSLVCWGEVGE
Sbjct: 1078 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSLVCWGEVGE 1120

[Close]

BLAST of Cmc09g0240031 vs. ExPASy TrEMBL
Match: A0A5A7SSL3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold465G00540 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.6e-82
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFITGLPKTLKGYTVIWV V+RLTKSAHF+ GKSTYTASKWGQLYMTEIVR HGVP+SI
Sbjct: 1146 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 1205

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            +SDRDARFTSKF KGLQLAL TRLDF+TAFH QTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 1206 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1265

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE 164
            DSHLHLMEFAYNNSYQATI MAPFEALY +CCRS VCWGEVGE
Sbjct: 1266 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGE 1308

[Close]

BLAST of Cmc09g0240031 vs. ExPASy TrEMBL
Match: A0A5A7TAT0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00960 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.6e-82
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1    MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
            MDFITGLPKTLKGYTVIWV V+RLTKSAHF+ GKSTYTASKWGQLYMTEIVR HGVP+SI
Sbjct: 907  MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 966

Query: 61   VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
            +SDRDARFTSKF KGLQLAL TRLDF+TAFH QTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 967  ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 1026

Query: 121  DSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE 164
            DSHLHLMEFAYNNSYQATI MAPFEALY +CCRS VCWGEVGE
Sbjct: 1027 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGE 1069

[Close]

BLAST of Cmc09g0240031 vs. ExPASy TrEMBL
Match: A0A5A7V4U5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14343G00020 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.6e-82
Identity = 148/163 (90.80%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 1   MDFITGLPKTLKGYTVIWVFVNRLTKSAHFISGKSTYTASKWGQLYMTEIVRPHGVPISI 60
           MDFITGLPKTLKGYTVIWV V+RLTKSAHF+ GKSTYTASKWGQLYMTEIVR HGVP+SI
Sbjct: 110 MDFITGLPKTLKGYTVIWVVVDRLTKSAHFVPGKSTYTASKWGQLYMTEIVRLHGVPVSI 169

Query: 61  VSDRDARFTSKFCKGLQLALSTRLDFNTAFHHQTDGQTERLNQILEDMLRACVLEFSGSW 120
           +SDRDARFTSKF KGLQLAL TRLDF+TAFH QTDGQTERLNQILEDMLRACVLEFSGSW
Sbjct: 170 ISDRDARFTSKFWKGLQLALGTRLDFSTAFHPQTDGQTERLNQILEDMLRACVLEFSGSW 229

Query: 121 DSHLHLMEFAYNNSYQATISMAPFEALYVRCCRSLVCWGEVGE 164
           DSHLHLMEFAYNNSYQATI MAPFEALY +CCRS VCWGEVGE
Sbjct: 230 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWGEVGE 272

The following BLAST results are available for this feature:

BLAST of Cmc09g0240031 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039482.1	5.5e-83	98.05	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15237.1 ty3-gyp...	[more]
KAA0032248.1	7.2e-83	92.02	pol protein [Cucumis melo var. makuwa]	[more]
KAA0040542.1	1.8e-81	90.80	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0032541.1	1.8e-81	90.80	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063083.1	1.8e-81	90.80	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc09g0240031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	7.4e-22	40.00	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	2.2e-21	39.31	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	1.2e-19	33.11	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.2e-19	33.11	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.2e-19	33.11	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc09g0240031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTI4	2.7e-83	98.05	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SNR3	3.5e-83	92.02	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7SSL3	8.6e-82	90.80	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A5A7TAT0	8.6e-82	90.80	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V4U5	8.6e-82	90.80	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14343G00020 ...	[more]

BLAST of Cmc09g0240031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..158 e-value: 5.5E-36 score: 125.7
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..146
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 14.329597
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0240031.1	Cmc09g0240031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0008270	zinc ion binding