Cmc09g0239971 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc09g0239971
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	apidaecins type 73-like isoform X2
Location	CMiso1.1chr09: 2059606 .. 2060451 (-)
RNA-Seq Expression	Cmc09g0239971
Synteny	Cmc09g0239971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGTTATTCTTGGGTGTTCACAAGAAAGAAATTTGAGAATCCTCCCAAAAGGCCTCAAAATGGATAACAAAAGAATTTTATCAATTCTTCTTCTTTCATGTTTTCTCTTTCTCTTTCTCTCTCCTGGTACTCTTCTCTCTCCTATTTCTTCTGTCATATTGGATTTTTATTATTACATTCATTGCTCTTATCTCTTCTCTGTTCAAACTTTTTTTTTCCTCAAAGGATTTGGAGTAGAAACGATGGGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGTGATTATTCAAATTTTGTTGTCCTTCTACTTTCGATTTTGGTTTATTTTAATTCACAAACTTTCCTTTTGGATAATCGTTTTAATTGGTATCTCATTTTTTTACCATGTAAAAATCAAAATGAAGGTTTTGAAAGTAGAAAAATTTAAAATGAAACAGATGATTAAAAGTATACAACGCAAATGAACGTCTGAGATTTTGTATTTTTATGTTTGACAGGAAATAAGTGGAGGAAAATGGAGAGACGTGATGGTTCAATTGCGTGAAGACTATCATGGTCCGGGACCTAATAAACCAAAGGCTAGCTATAATATGGCGGCTCCTTCTGCAACACCTTAATTAATTATCAACATCATATATCAGTGTATTGTAAAATCCAAATGCATGTACTTCAAAACTACTAGCTGTAGTGTGTACGCTTTTTCTTTGTCTTCATATTTCAAGTGTGTAATAATAATCCATGCATGCATGGACGTAAGCAGTGGCTGCATGTAATTTTCAACCCTTCTCTTTTAAATTAGTGTAATCTATACATATTATGTACTTTTAAAAAGTGTG

mRNA sequence

TTAGTTATTCTTGGGTGTTCACAAGAAAGAAATTTGAGAATCCTCCCAAAAGGCCTCAAAATGGATAACAAAAGAATTTTATCAATTCTTCTTCTTTCATGTTTTCTCTTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAACGATGGGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGAAATAAGTGGAGGAAAATGGAGAGACGTGATGGTTCAATTGCGTGAAGACTATCATGGTCCGGGACCTAATAAACCAAAGGCTAGCTATAATATGGCGGCTCCTTCTGCAACACCTTAATTAATTATCAACATCATATATCAGTGTATTGTAAAATCCAAATGCATGTACTTCAAAACTACTAGCTGTAGTGTGTACGCTTTTTCTTTGTCTTCATATTTCAAGTGTGTAATAATAATCCATGCATGCATGGACGTAAGCAGTGGCTGCATGTAATTTTCAACCCTTCTCTTTTAAATTAGTGTAATCTATACATATTATGTACTTTTAAAAAGTGTG

Coding sequence (CDS)

ATGGATAACAAAAGAATTTTATCAATTCTTCTTCTTTCATGTTTTCTCTTTCTCTTTCTCTCTCCTGGATTTGGAGTAGAAACGATGGGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGAAATAAGTGGAGGAAAATGGAGAGACGTGATGGTTCAATTGCGTGAAGACTATCATGGTCCGGGACCTAATAAACCAAAGGCTAGCTATAATATGGCGGCTCCTTCTGCAACACCTTAA

Protein sequence

MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP

Homology

[Close]

BLAST of Cmc09g0239971 vs. NCBI nr
Match: XP_031741770.1 (probable calcium-binding protein CML47 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 4.1e-26
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMV-QLRE 60
          M+++RIL ILL+SCFLFLFLSPGFGVETM TMEQAASLTPHEKE+SGGKWRDVMV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHGPGPNKPKASYNMAAP-SATP 83
          DYHGPGPNKP+   ++ AP SATP
Sbjct: 61 DYHGPGPNKPR---SITAPNSATP 81

[Close]

BLAST of Cmc09g0239971 vs. NCBI nr
Match: KGN52469.1 (hypothetical protein Csa_008670 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 4.1e-26
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMV-QLRE 60
          M+++RIL ILL+SCFLFLFLSPGFGVETM TMEQAASLTPHEKE+SGGKWRDVMV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHGPGPNKPKASYNMAAP-SATP 83
          DYHGPGPNKP+   ++ AP SATP
Sbjct: 61 DYHGPGPNKPR---SITAPNSATP 81

[Close]

BLAST of Cmc09g0239971 vs. NCBI nr
Match: KAA0039469.1 (hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK00659.1 hypothetical protein E5676_scaffold169G002810 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 9.4e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 29 MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP 83
          MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP
Sbjct: 1  MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP 54

[Close]

BLAST of Cmc09g0239971 vs. ExPASy TrEMBL
Match: A0A0A0KU89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMV-QLRE 60
          M+++RIL ILL+SCFLFLFLSPGFGVETM TMEQAASLTPHEKE+SGGKWRDVMV QL E
Sbjct: 1  MEDQRILPILLVSCFLFLFLSPGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLE 60

Query: 61 DYHGPGPNKPKASYNMAAP-SATP 83
          DYHGPGPNKP+   ++ AP SATP
Sbjct: 61 DYHGPGPNKPR---SITAPNSATP 81

[Close]

BLAST of Cmc09g0239971 vs. ExPASy TrEMBL
Match: A0A5A7TDZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002810 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 29 MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP 83
          MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP
Sbjct: 1  MGTMEQAASLTPHEKEISGGKWRDVMVQLREDYHGPGPNKPKASYNMAAPSATP 54

[Close]

BLAST of Cmc09g0239971 vs. ExPASy TrEMBL
Match: A0A6J1BVK3 (apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006109 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-04
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MDNKRILSILLLSCFLFLFLSPGFGVETMGTMEQAASLTPHEKEISGGKWRDVMVQLRED 60
          MD+  I S+LL+S  L LF S GFGV+ MG+ E   S+TP ++ I   +     V    +
Sbjct: 1  MDSLTIFSLLLISSLLLLFFSHGFGVDVMGSGEHPESMTPLKESIQKSR----KVNEVAN 60

Query: 61 YHGPGPNKPKASYNMAAPSATP 83
          YH P PN P   +     +A+P
Sbjct: 61 YHDPAPNHPTMFHPTKILNASP 78

The following BLAST results are available for this feature:

BLAST of Cmc09g0239971 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741770.1	4.1e-26	79.76	probable calcium-binding protein CML47 [Cucumis sativus]	[more]
KGN52469.1	4.1e-26	79.76	hypothetical protein Csa_008670 [Cucumis sativus]	[more]
KAA0039469.1	9.4e-23	100.00	hypothetical protein E6C27_scaffold64G002790 [Cucumis melo var. makuwa] >TYK0065...	[more]

BLAST of Cmc09g0239971 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc09g0239971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU89	2.0e-26	79.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1	[more]
A0A5A7TDZ0	4.6e-23	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1BVK3	8.1e-04	37.80	apidaecins type 73-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11100610...	[more]

BLAST of Cmc09g0239971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc09g0239971.1	Cmc09g0239971.1	mRNA