Cmc08g0236071 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0236071
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr08: 32372406 .. 32373059 (-)
RNA-Seq Expression	Cmc08g0236071
Synteny	Cmc08g0236071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTAAAACTGCTTTCCTAAATTGTGATTTAGAAAAAGAGATTTACATGGAACAACTTGAAGGTTTCATAGTTCACAATCAAGAATCCAAAGTTTGCAAACTAGATAAATCCCTCTATGGCCTGAAACAAGCTCCTAAACAATGGCACGAAAAGTTTAACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATATATCTACTATAAGACTGAAGGTAGGCTATGTATTATCGTATGCATATACATAGATGACATATTAATCTTTGGATCAAACTTGCATGTCATAAATGATGTAAAATCTATGTTGAGTGTAAACTTTGACATGAAAGACGTAGATGAAACTTATGTAATCTTAGGCATCAACATTACAAGAACTGAAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATCCTAAAGAAGTACAATTACTTCGATAGTAAACCAGCTTGTACACCTTATGACTCTAATGTGAAATTATTCAAGAACACTAGTGACAGTGTTAACCAATCCGAGTACGCTAGTATCATAGGTAGTTTGAAGTATGCTACTGATTGCACTAGATCAGACATAGCTTACGTCGTAGGATTACTATGTAGGTTTACCAGCATACCCAATCTAGAACATTAA

mRNA sequence

ATGGATGTTAAAACTGCTTTCCTAAATTGTGATTTAGAAAAAGAGATTTACATGGAACAACTTGAAGGTTTCATAGTTCACAATCAAGAATCCAAAGTTTGCAAACTAGATAAATCCCTCTATGGCCTGAAACAAGCTCCTAAACAATGGCACGAAAAGTTTAACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATATATCTACTATAAGACTGAAGGTAGGCTATGTATTATCGTATGCATATACATAGATGACATATTAATCTTTGGATCAAACTTGCATGTCATAAATGATGTAAAATCTATGTTGAGTGTAAACTTTGACATGAAAGACGTAGATGAAACTTATGTAATCTTAGGCATCAACATTACAAGAACTGAAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATCCTAAAGAAGTACAATTACTTCGATAGTAAACCAGCTTGTACACCTTATGACTCTAATGTGAAATTATTCAAGAACACTAGTGACAGTGTTAACCAATCCGAGTACGCTAGTATCATAGGTAGTTTGAAGTATGCTACTGATTGCACTAGATCAGACATAGCTTACGTCGTAGGATTACTATGTAGGTTTACCAGCATACCCAATCTAGAACATTAA

Coding sequence (CDS)

ATGGATGTTAAAACTGCTTTCCTAAATTGTGATTTAGAAAAAGAGATTTACATGGAACAACTTGAAGGTTTCATAGTTCACAATCAAGAATCCAAAGTTTGCAAACTAGATAAATCCCTCTATGGCCTGAAACAAGCTCCTAAACAATGGCACGAAAAGTTTAACAACTTACTCATGTCAAAAGGATTCAAAGTAAATGAAAGTGACAAATATATCTACTATAAGACTGAAGGTAGGCTATGTATTATCGTATGCATATACATAGATGACATATTAATCTTTGGATCAAACTTGCATGTCATAAATGATGTAAAATCTATGTTGAGTGTAAACTTTGACATGAAAGACGTAGATGAAACTTATGTAATCTTAGGCATCAACATTACAAGAACTGAAAATGGAATTTTCTTAGATCAATCTCATTACATAGAAAAGATCCTAAAGAAGTACAATTACTTCGATAGTAAACCAGCTTGTACACCTTATGACTCTAATGTGAAATTATTCAAGAACACTAGTGACAGTGTTAACCAATCCGAGTACGCTAGTATCATAGGTAGTTTGAAGTATGCTACTGATTGCACTAGATCAGACATAGCTTACGTCGTAGGATTACTATGTAGGTTTACCAGCATACCCAATCTAGAACATTAA

Protein sequence

MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMSKGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDETYVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSEYASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH

Homology

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BLAST of Cmc08g0236071 vs. NCBI nr
Match: KAA0060459.1 (hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK18544.1 hypothetical protein E5676_scaffold119G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 387.5 bits (994), Expect = 7.6e-104
Identity = 190/217 (87.56%), Postives = 201/217 (92.63%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKTAFLN DLE+EIYMEQ EGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKF+NLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNESDK IYYKTEGRLCII+C+Y+DD+LIFGSNLHVINDVKSMLSVNFDMKD+ E 
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VILGI ITRTENGIFLDQSHYIEK LKKYNYFDSKP CTPYDS+VKLFKNT DSVNQ+E
Sbjct: 121 DVILGIKITRTENGIFLDQSHYIEKTLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQTE 180

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGSL+YA D TR  IAY VGLLCRFTS P+LEH
Sbjct: 181 YASIIGSLRYAVDYTRPSIAYAVGLLCRFTSRPSLEH 217

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BLAST of Cmc08g0236071 vs. NCBI nr
Match: TYK06419.1 (hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 385.6 bits (989), Expect = 2.9e-103
Identity = 188/217 (86.64%), Postives = 202/217 (93.09%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKTAFLN DLE+EIYMEQ EGFIVH QESKVCKLDKSLYGLKQAPKQWHEKF+NLL+S
Sbjct: 48  MDVKTAFLNGDLEEEIYMEQSEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLLS 107

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNESDK IYYKTEGRLCII+C+Y+DDILIFGSNL+VINDVKSMLS NFDMK++DE 
Sbjct: 108 KGFKVNESDKCIYYKTEGRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELDEA 167

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VILGI ITRT+NGI LDQSHYIEKILKKYNYFDSKP CTPYDS+VKLF+NT DSVNQSE
Sbjct: 168 DVILGIKITRTKNGISLDQSHYIEKILKKYNYFDSKPTCTPYDSSVKLFENTGDSVNQSE 227

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGSL+YA DCTR DIAY VGLLCRFTS P+LEH
Sbjct: 228 YASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEH 264

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BLAST of Cmc08g0236071 vs. NCBI nr
Match: KAA0032842.1 (hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK21198.1 hypothetical protein E5676_scaffold359G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 375.6 bits (963), Expect = 3.0e-100
Identity = 186/217 (85.71%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKT FLN DL +EIYMEQ EGFIVH+QESKVCKLDKSLY LKQAPKQ HEKF+NLLMS
Sbjct: 1   MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMS 60

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNESDK IYYK EGRLCII+C+Y+DD+LIFGSNLHVINDVKSML+VNFDMKD+ E 
Sbjct: 61  KGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLGEA 120

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VILGI ITR ENGI LDQSHYIEKILKKYNYFDSKPACTPYDS+VKLFKNT DSVNQSE
Sbjct: 121 DVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSE 180

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGSL+YA DCTR DIAY VGLLCRFTS P+LEH
Sbjct: 181 YASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEH 217

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BLAST of Cmc08g0236071 vs. NCBI nr
Match: TYK00058.1 (hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 371.3 bits (952), Expect = 5.6e-99
Identity = 181/217 (83.41%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKTAFLN DLE+EIYM+Q EGFIVH QE+KV KLDKS Y LKQAPKQWHEKFNNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMKQPEGFIVHGQETKVRKLDKSFYDLKQAPKQWHEKFNNLLMS 60

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNESD+ IYYKTEGR+CII+C+Y+DD+LIFGSNLH+INDVKSMLS NFDMKD+ E 
Sbjct: 61  KGFKVNESDECIYYKTEGRVCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 120

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VILGI I RTENGI LDQSHYIEKILKKYNYF+SKPACTPYDS+VKLFKNT DSVNQSE
Sbjct: 121 DVILGIKIARTENGISLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSE 180

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGSL+YA DCTR DIAY +GLLCRFTS  +LEH
Sbjct: 181 YASIIGSLRYAADCTRPDIAYTIGLLCRFTSRLSLEH 217

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BLAST of Cmc08g0236071 vs. NCBI nr
Match: KAA0036533.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 367.9 bits (943), Expect = 6.2e-98
Identity = 181/217 (83.41%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKT FLN DLE+EIYMEQ EGFIV  QESKVCKLDKSLYGLKQAPK+WH+KF+NLLMS
Sbjct: 117 MDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKEWHKKFDNLLMS 176

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNES+K IYYKT+GRLCII+C+Y+DD+LIFGSNLH+INDVKSMLS NFDMKD+ E 
Sbjct: 177 KGFKVNESNKCIYYKTKGRLCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 236

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VIL I ITRTENGIFLDQSHYIEKILKKYNYFDSK A TPYDS+VKLFKNTSDSVNQSE
Sbjct: 237 DVILDIKITRTENGIFLDQSHYIEKILKKYNYFDSKSAFTPYDSSVKLFKNTSDSVNQSE 296

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGS++YA DCT+ DIAY VGLL RFTS P+LEH
Sbjct: 297 YASIIGSMRYAADCTKLDIAYAVGLLYRFTSRPSLEH 333

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BLAST of Cmc08g0236071 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-44
Identity = 101/228 (44.30%), Postives = 146/228 (64.04%), Query Frame = 0


Query: 1    MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
            +DVKTAFL+ DLE+EIYMEQ EGF V  ++  VCKL+KSLYGLKQAP+QW+ KF++ + S
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGFKVNESDKYIYYK--TEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVD 120
            + +    SD  +Y+K  +E    II+ +Y+DD+LI G +  +I  +K  LS +FDMKD+ 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNF-IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLG 1040

Query: 121  ETYVILGINIT--RTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSV 180
                ILG+ I   RT   ++L Q  YIE++L+++N  ++KP  TP   ++KL K    + 
Sbjct: 1041 PAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTT 1100

Query: 181  NQSE-------YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
             + +       Y+S +GSL YA  CTR DIA+ VG++ RF   P  EH
Sbjct: 1101 VEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEH 1147

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BLAST of Cmc08g0236071 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.1e-33
Identity = 81/218 (37.16%), Postives = 124/218 (56.88%), Query Frame = 0


Query: 1    MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
            +DV  AFL   L  ++YM Q  GFI  ++ + VCKL K+LYGLKQAP+ W+ +  N L++
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
             GF  + SD  ++    G+  + + +Y+DDILI G++  ++++    LS  F +KD +E 
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKL-FKNTSDSVNQS 180
            +  LGI   R   G+ L Q  YI  +L + N   +KP  TP   + KL   + +   + +
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPT 1243

Query: 181  EYASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
            EY  I+GSL+Y    TR DI+Y V  L +F  +P  EH
Sbjct: 1244 EYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEH 1280

[Close]

BLAST of Cmc08g0236071 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-31
Identity = 74/218 (33.94%), Postives = 121/218 (55.50%), Query Frame = 0


Query: 1    MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
            +DV  AFL   L  E+YM Q  GF+  ++   VC+L K++YGLKQAP+ W+ +    L++
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
             GF  + SD  ++    GR  I + +Y+DDILI G++  ++      LS  F +K+ ++ 
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSV-NQS 180
            +  LGI   R   G+ L Q  Y   +L + N   +KP  TP  ++ KL  ++   + + +
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPT 1226

Query: 181  EYASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
            EY  I+GSL+Y    TR D++Y V  L ++  +P  +H
Sbjct: 1227 EYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDH 1263

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BLAST of Cmc08g0236071 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-30
Identity = 82/218 (37.61%), Postives = 118/218 (54.13%), Query Frame = 0


Query: 1    MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
            MDVKTAFLN  L++EIYM   +G  +      VCKL+K++YGLKQA + W E F   L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGFKVNESDKYIYYKTEGRL--CIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVD 120
              F  +  D+ IY   +G +   I V +Y+DD++I   ++  +N+ K  L   F M D++
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  ETYVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQ 180
            E    +GI I   E+ I+L QS Y++KIL K+N  +     TP  S +      SD    
Sbjct: 1121 EIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCN 1180

Query: 181  SEYASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLE 217
            +   S+IG L Y   CTR D+   V +L R++S  N E
Sbjct: 1181 TPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSE 1216

[Close]

BLAST of Cmc08g0236071 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 76/219 (34.70%), Postives = 116/219 (52.97%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDV TAFLN  +++ IY++Q  GF+       V +L   +YGLKQAP  W+E  NN L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
            GF  +E +  +Y+++     I + +Y+DD+L+   +  + + VK  L+  + MKD+ + 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 YVILGINITRTENG-IFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQ- 180
              LG+NI ++ NG I L    YI K   +      K   TP  ++  LF+ TS  +   
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 181 SEYASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           + Y SI+G L +  +  R DI+Y V LL RF   P   H
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIH 219

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BLAST of Cmc08g0236071 vs. ExPASy TrEMBL
Match: A0A5D3D4T4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00450 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.7e-104
Identity = 190/217 (87.56%), Postives = 201/217 (92.63%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKTAFLN DLE+EIYMEQ EGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKF+NLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMEQPEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFDNLLMS 60

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNESDK IYYKTEGRLCII+C+Y+DD+LIFGSNLHVINDVKSMLSVNFDMKD+ E 
Sbjct: 61  KGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSVNFDMKDLGEA 120

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VILGI ITRTENGIFLDQSHYIEK LKKYNYFDSKP CTPYDS+VKLFKNT DSVNQ+E
Sbjct: 121 DVILGIKITRTENGIFLDQSHYIEKTLKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQTE 180

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGSL+YA D TR  IAY VGLLCRFTS P+LEH
Sbjct: 181 YASIIGSLRYAVDYTRPSIAYAVGLLCRFTSRPSLEH 217

[Close]

BLAST of Cmc08g0236071 vs. ExPASy TrEMBL
Match: A0A5D3C7T6 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001210 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.4e-103
Identity = 188/217 (86.64%), Postives = 202/217 (93.09%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKTAFLN DLE+EIYMEQ EGFIVH QESKVCKLDKSLYGLKQAPKQWHEKF+NLL+S
Sbjct: 48  MDVKTAFLNGDLEEEIYMEQSEGFIVHGQESKVCKLDKSLYGLKQAPKQWHEKFDNLLLS 107

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNESDK IYYKTEGRLCII+C+Y+DDILIFGSNL+VINDVKSMLS NFDMK++DE 
Sbjct: 108 KGFKVNESDKCIYYKTEGRLCIIICLYVDDILIFGSNLYVINDVKSMLSENFDMKELDEA 167

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VILGI ITRT+NGI LDQSHYIEKILKKYNYFDSKP CTPYDS+VKLF+NT DSVNQSE
Sbjct: 168 DVILGIKITRTKNGISLDQSHYIEKILKKYNYFDSKPTCTPYDSSVKLFENTGDSVNQSE 227

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGSL+YA DCTR DIAY VGLLCRFTS P+LEH
Sbjct: 228 YASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEH 264

[Close]

BLAST of Cmc08g0236071 vs. ExPASy TrEMBL
Match: A0A5A7SNZ1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00010 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 186/217 (85.71%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKT FLN DL +EIYMEQ EGFIVH+QESKVCKLDKSLY LKQAPKQ HEKF+NLLMS
Sbjct: 1   MDVKTTFLNGDLGEEIYMEQPEGFIVHDQESKVCKLDKSLYDLKQAPKQCHEKFDNLLMS 60

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNESDK IYYK EGRLCII+C+Y+DD+LIFGSNLHVINDVKSML+VNFDMKD+ E 
Sbjct: 61  KGFKVNESDKCIYYKIEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLNVNFDMKDLGEA 120

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VILGI ITR ENGI LDQSHYIEKILKKYNYFDSKPACTPYDS+VKLFKNT DSVNQSE
Sbjct: 121 DVILGIKITRFENGISLDQSHYIEKILKKYNYFDSKPACTPYDSSVKLFKNTGDSVNQSE 180

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGSL+YA DCTR DIAY VGLLCRFTS P+LEH
Sbjct: 181 YASIIGSLRYAADCTRPDIAYAVGLLCRFTSRPSLEH 217

[Close]

BLAST of Cmc08g0236071 vs. ExPASy TrEMBL
Match: A0A5D3BLQ7 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00040 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.7e-99
Identity = 181/217 (83.41%), Postives = 197/217 (90.78%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKTAFLN DLE+EIYM+Q EGFIVH QE+KV KLDKS Y LKQAPKQWHEKFNNLLMS
Sbjct: 1   MDVKTAFLNGDLEEEIYMKQPEGFIVHGQETKVRKLDKSFYDLKQAPKQWHEKFNNLLMS 60

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNESD+ IYYKTEGR+CII+C+Y+DD+LIFGSNLH+INDVKSMLS NFDMKD+ E 
Sbjct: 61  KGFKVNESDECIYYKTEGRVCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 120

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VILGI I RTENGI LDQSHYIEKILKKYNYF+SKPACTPYDS+VKLFKNT DSVNQSE
Sbjct: 121 DVILGIKIARTENGISLDQSHYIEKILKKYNYFESKPACTPYDSSVKLFKNTGDSVNQSE 180

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGSL+YA DCTR DIAY +GLLCRFTS  +LEH
Sbjct: 181 YASIIGSLRYAADCTRPDIAYTIGLLCRFTSRLSLEH 217

[Close]

BLAST of Cmc08g0236071 vs. ExPASy TrEMBL
Match: A0A5A7T0X0 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00340 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.0e-98
Identity = 181/217 (83.41%), Postives = 198/217 (91.24%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQESKVCKLDKSLYGLKQAPKQWHEKFNNLLMS 60
           MDVKT FLN DLE+EIYMEQ EGFIV  QESKVCKLDKSLYGLKQAPK+WH+KF+NLLMS
Sbjct: 117 MDVKTTFLNGDLEEEIYMEQPEGFIVQAQESKVCKLDKSLYGLKQAPKEWHKKFDNLLMS 176

Query: 61  KGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDET 120
           KGFKVNES+K IYYKT+GRLCII+C+Y+DD+LIFGSNLH+INDVKSMLS NFDMKD+ E 
Sbjct: 177 KGFKVNESNKCIYYKTKGRLCIIICLYVDDMLIFGSNLHIINDVKSMLSANFDMKDLGEA 236

Query: 121 YVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSE 180
            VIL I ITRTENGIFLDQSHYIEKILKKYNYFDSK A TPYDS+VKLFKNTSDSVNQSE
Sbjct: 237 DVILDIKITRTENGIFLDQSHYIEKILKKYNYFDSKSAFTPYDSSVKLFKNTSDSVNQSE 296

Query: 181 YASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           YASIIGS++YA DCT+ DIAY VGLL RFTS P+LEH
Sbjct: 297 YASIIGSMRYAADCTKLDIAYAVGLLYRFTSRPSLEH 333

[Close]

BLAST of Cmc08g0236071 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 130.2 bits (326), Expect = 2.0e-30
Identity = 78/222 (35.14%), Postives = 118/222 (53.15%), Query Frame = 0


Query: 1   MDVKTAFLNCDLEKEIYMEQLEGFIVHNQES----KVCKLDKSLYGLKQAPKQWHEKFNN 60
           +D+  AFLN DL++EIYM+   G+     +S     VC L KS+YGLKQA +QW  KF+ 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  LLMSKGFKVNESDKYIYYKTEGRLCIIVCIYIDDILIFGSNLHVINDVKSMLSVNFDMKD 120
            L+  GF  + SD   + K    L + V +Y+DDI+I  +N   ++++KS L   F ++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 VDETYVILGINITRTENGIFLDQSHYIEKILKKYNYFDSKPACTPYDSNVKLFKNT-SDS 180
           +      LG+ I R+  GI + Q  Y   +L +      KP+  P D +V    ++  D 
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 VNQSEYASIIGSLKYATDCTRSDIAYVVGLLCRFTSIPNLEH 218
           V+   Y  +IG L Y    TR DI++ V  L +F+  P L H
Sbjct: 373 VDAKAYRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLAH 413

[Close]

BLAST of Cmc08g0236071 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-17
Identity = 48/130 (36.92%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 86  IYIDDILIFGSNLHVINDVKSMLSVNFDMKDVDETYVILGINITRTENGIFLDQSHYIEK 145
           +Y+DDIL+ GS+  ++N +   LS  F MKD+   +  LGI I    +G+FL Q+ Y E+
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 146 ILKKYNYFDSKPACTPYDSNVKLFKNTSDSVNQSEYASIIGSLKYATDCTRSDIAYVVGL 205
           IL      D KP  TP    +    +T+   + S++ SI+G+L+Y T  TR DI+Y V +
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAVNI 124

Query: 206 LCRFTSIPNL 216
           +C+    P L
Sbjct: 125 VCQRMHEPTL 133

The following BLAST results are available for this feature:

BLAST of Cmc08g0236071 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060459.1	7.6e-104	87.56	hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa] >TYK1854...	[more]
TYK06419.1	2.9e-103	86.64	hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]	[more]
KAA0032842.1	3.0e-100	85.71	hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa] >TYK211...	[more]
TYK00058.1	5.6e-99	83.41	hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]	[more]
KAA0036533.1	6.2e-98	83.41	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0236071 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-44	44.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.1e-33	37.16	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.0e-31	33.94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	2.6e-30	37.61	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	1.6e-27	34.70	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc08g0236071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D4T4	3.7e-104	87.56	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3C7T6	1.4e-103	86.64	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5A7SNZ1	1.4e-100	85.71	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5D3BLQ7	2.7e-99	83.41	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Cucumis melo v...	[more]
A0A5A7T0X0	3.0e-98	83.41	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]

BLAST of Cmc08g0236071 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.0e-30	35.14	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	5.7e-17	36.92	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..161 e-value: 2.8E-48 score: 164.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..215
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0236071.1	Cmc08g0236071.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding