Cmc08g0235601 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc08g0235601
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr08: 32042418 .. 32043215 (-)
RNA-Seq Expression	Cmc08g0235601
Synteny	Cmc08g0235601

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCATAACTGTTACTGCTGCACTTACTGATGAGCATTGGATCTTAGCAATGCAGGAGGAACTACTGTCGTTTGAAAGAAATCAGGTATGGGATCCTGTGCCAAAACCACCTCATGCGAACATAATTGGAACTAAATGGATCTTTAAGAACAAAACGGATGAACAAGGGAGAGTTATTCGAAACAAAGCCAGACTGGTTGCACAGGGGTACTCTCAGATTGAAGGTTTAGATTTTGGCGAGATGTTTGCGCCCGTAGCTAGATTATAAGTCATTCGATTACTTCTGAGTTATGCTTGTTTTCGGAAGTTCAAACTCTTTCAAATGGACGTGAAGAGTGCTTTTCTGAATGGATATTTAACTGAGGAAGTGTATGTTGCTCAGCCAAAAGGTTTTGTTGATCTGGTGCATCGCAATTATGTATACAAGCTGCGTAAGGCTCTATATGGTCTCAAGCAAGCCCCCAGAGCCTGGTATAAGAGACTCTCCACATATCTATTACGACAAGGATACCAACGAGGAAGTGCAGATCAAACTATGTTCATATATCGACAAGGTACTGAATTTCTGATAGGTCAGATCTATGTCGACGACATTATATTTGGTGGGACGTCATCTGCATATGTTGAACAATTTGTTGATCGGATGAAGCGAGAATTTAAAATGAGTATGGTTGGTGAACTGACGCTCTTTCTAGGATTTCAGATTAAGCAAGACAAGACAGGAATTTTCTTTTCACAAGAAAAATATGCAAAGGCTCTCATCTCTAAGTTTGGAATGGATGGCCAAACCTAA

mRNA sequence

ATGGAACCCATAACTGTTACTGCTGCACTTACTGATGAGCATTGGATCTTAGCAATGCAGGAGGAACTACTGTCGTTTGAAAGAAATCAGGTATGGGATCCTGTGCCAAAACCACCTCATGCGAACATAATTGGAACTAAATGGATCTTTAAGAACAAAACGGATGAACAAGGGAGAGTTATTCGAAACAAAGCCAGACTGGTTGCACAGGGGTACTCTCAGATTGAAGGTTTAGATTTTGGCGAGATGTTTGCGCCCTTCAAACTCTTTCAAATGGACGTGAAGAGTGCTTTTCTGAATGGATATTTAACTGAGGAAGTGTATGTTGCTCAGCCAAAAGGTTTTGTTGATCTGGTGCATCGCAATTATGTATACAAGCTGCGTAAGGCTCTATATGGTCTCAAGCAAGCCCCCAGAGCCTGGTATAAGAGACTCTCCACATATCTATTACGACAAGGATACCAACGAGGAAGTGCAGATCAAACTATGTTCATATATCGACAAGGTACTGAATTTCTGATAGGTCAGATCTATGTCGACGACATTATATTTGGTGGGACGTCATCTGCATATGTTGAACAATTTGTTGATCGGATGAAGCGAGAATTTAAAATGAGTATGGTTGGTGAACTGACGCTCTTTCTAGGATTTCAGATTAAGCAAGACAAGACAGGAATTTTCTTTTCACAAGAAAAATATGCAAAGGCTCTCATCTCTAAGTTTGGAATGGATGGCCAAACCTAA

Coding sequence (CDS)

ATGGAACCCATAACTGTTACTGCTGCACTTACTGATGAGCATTGGATCTTAGCAATGCAGGAGGAACTACTGTCGTTTGAAAGAAATCAGGTATGGGATCCTGTGCCAAAACCACCTCATGCGAACATAATTGGAACTAAATGGATCTTTAAGAACAAAACGGATGAACAAGGGAGAGTTATTCGAAACAAAGCCAGACTGGTTGCACAGGGGTACTCTCAGATTGAAGGTTTAGATTTTGGCGAGATGTTTGCGCCCTTCAAACTCTTTCAAATGGACGTGAAGAGTGCTTTTCTGAATGGATATTTAACTGAGGAAGTGTATGTTGCTCAGCCAAAAGGTTTTGTTGATCTGGTGCATCGCAATTATGTATACAAGCTGCGTAAGGCTCTATATGGTCTCAAGCAAGCCCCCAGAGCCTGGTATAAGAGACTCTCCACATATCTATTACGACAAGGATACCAACGAGGAAGTGCAGATCAAACTATGTTCATATATCGACAAGGTACTGAATTTCTGATAGGTCAGATCTATGTCGACGACATTATATTTGGTGGGACGTCATCTGCATATGTTGAACAATTTGTTGATCGGATGAAGCGAGAATTTAAAATGAGTATGGTTGGTGAACTGACGCTCTTTCTAGGATTTCAGATTAAGCAAGACAAGACAGGAATTTTCTTTTCACAAGAAAAATATGCAAAGGCTCTCATCTCTAAGTTTGGAATGGATGGCCAAACCTAA

Protein sequence

MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRVIRNKARLVAQGYSQIEGLDFGEMFAPFKLFQMDVKSAFLNGYLTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQTMFIYRQGTEFLIGQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISKFGMDGQT

Homology

[Close]

BLAST of Cmc08g0235601 vs. NCBI nr
Match: KAA0043008.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 365.5 bits (937), Expect = 3.5e-97
Identity = 187/244 (76.64%), Postives = 205/244 (84.02%), Query Frame = 0


Query: 1   MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
           +EP TV+A L+DEHWILAMQEELL FERNQVW+ VPKPP+ANIIGTKWIFKNKTDE+  V
Sbjct: 189 LEPTTVSAVLSDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEE--V 248

Query: 61  IRNKARLVAQGYSQIEGLDFGEMFAPFKLFQMDVKSAFLNGYLTEEVYVAQPKGFVDLVH 120
            R +A  +   Y+          F  FKLFQMDVKSAFLNGYL+EEVYVAQPKGFVD  H
Sbjct: 249 ARLEAIRLLLSYT---------CFRRFKLFQMDVKSAFLNGYLSEEVYVAQPKGFVDPTH 308

Query: 121 RNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQTMFIYRQGTEFLIGQIYVD 180
           +++VYKLRKALY LKQAPRAWY+RLSTYLL+Q Y RGSADQTMFIYRQGT+FLI QIYVD
Sbjct: 309 QDHVYKLRKALYRLKQAPRAWYERLSTYLLQQEYHRGSADQTMFIYRQGTDFLIVQIYVD 368

Query: 181 DIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISK 240
           DIIFGGTSS YVEQFV +MK EFKMSMVGELT FLGFQI Q+ TGIFFSQEKYAK LI K
Sbjct: 369 DIIFGGTSSVYVEQFVAQMKGEFKMSMVGELTFFLGFQINQENTGIFFSQEKYAKNLIFK 421

Query: 241 FGMD 245
           FGMD
Sbjct: 429 FGMD 421

[Close]

BLAST of Cmc08g0235601 vs. NCBI nr
Match: KAA0045100.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ96228.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 1.7e-88
Identity = 181/244 (74.18%), Postives = 184/244 (75.41%), Query Frame = 0


Query: 1   MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
           MEP TVTAALTDEHWILAMQEELLSFERNQ                              
Sbjct: 95  MEPTTVTAALTDEHWILAMQEELLSFERNQ------------------------------ 154

Query: 61  IRNKARLVAQGYSQIEGLDFGEMFAPFKLFQMDVKSAFLNGYLTEEVYVAQPKGFVDLVH 120
                                     FKLFQMDVKSAFLNGYLTEEVY+AQPKGFVDLVH
Sbjct: 155 --------------------------FKLFQMDVKSAFLNGYLTEEVYIAQPKGFVDLVH 214

Query: 121 RNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQTMFIYRQGTEFLIGQIYVD 180
           R+YVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRG ADQTMFIYRQGTEFLI QIYV+
Sbjct: 215 RDYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGIADQTMFIYRQGTEFLIVQIYVN 274

Query: 181 DIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISK 240
           DIIF GTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISK
Sbjct: 275 DIIFSGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISK 282

Query: 241 FGMD 245
           FGMD
Sbjct: 335 FGMD 282

[Close]

BLAST of Cmc08g0235601 vs. NCBI nr
Match: GAU46010.1 (hypothetical protein TSUD_401320 [Trifolium subterraneum])

HSP 1 Score: 327.8 bits (839), Expect = 8.1e-86
Identity = 162/263 (61.60%), Postives = 196/263 (74.52%), Query Frame = 0


Query: 1    MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
            +EP  V  ALTDE+WI AMQEEL  F+RN+VWD VP+P + N+IGTKW++KNK+DE G V
Sbjct: 936  IEPRNVKEALTDEYWINAMQEELGQFKRNEVWDLVPRPENVNVIGTKWVYKNKSDENGNV 995

Query: 61   IRNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGY 120
             RNKARLVAQGY+QIEG+DF E FAP                  F+LFQMDVKSAFLNGY
Sbjct: 996  TRNKARLVAQGYAQIEGVDFDETFAPVAHLESIRLLLGVACILKFELFQMDVKSAFLNGY 1055

Query: 121  LTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQT 180
            L EEVYV QPKGFVD    N+VYKL+KALYGLKQAPRAWY+RL+ +LL QGY++G  D+T
Sbjct: 1056 LNEEVYVEQPKGFVDPSLPNHVYKLKKALYGLKQAPRAWYERLTEFLLSQGYRKGGNDKT 1115

Query: 181  MFIYRQGTEFLIGQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQD 240
            +F+  +  + +I QIYVDDIIFGG S   V+ FV +M+ EF+MS+VGELT FLG Q+KQ 
Sbjct: 1116 LFVKEEEGKLIIAQIYVDDIIFGGMSGQMVQHFVQQMQSEFEMSLVGELTYFLGLQVKQM 1175

Query: 241  KTGIFFSQEKYAKALISKFGMDG 246
               IF SQ KYAK ++ KFG DG
Sbjct: 1176 SNCIFVSQSKYAKNIVKKFGQDG 1198

[Close]

BLAST of Cmc08g0235601 vs. NCBI nr
Match: PNY10358.1 (retrotransposon-related protein, partial [Trifolium pratense])

HSP 1 Score: 327.4 bits (838), Expect = 1.1e-85
Identity = 160/263 (60.84%), Postives = 198/263 (75.29%), Query Frame = 0


Query: 1   MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
           +EP  V  ALTDE+WI AMQEEL  F+R++VWD VP+P   N+IGTKW++KNKTDE G +
Sbjct: 698 IEPKNVKEALTDEYWINAMQEELTQFKRSEVWDLVPRPEDVNVIGTKWVYKNKTDENGTI 757

Query: 61  IRNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGY 120
            RNKARLVAQGY+QIEG+DF E+FAP                  FKL+QMDVKSAFLNGY
Sbjct: 758 TRNKARLVAQGYTQIEGVDFDEIFAPVARLESIRLLLAVACILKFKLYQMDVKSAFLNGY 817

Query: 121 LTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQT 180
           L EEVYV QPKGFVD    N+VYKL+KALYGLKQAPRAWY+RL+ +L+ QGY++G  D+T
Sbjct: 818 LNEEVYVEQPKGFVDPSFPNHVYKLKKALYGLKQAPRAWYERLTEFLVNQGYKKGGHDKT 877

Query: 181 MFIYRQGTEFLIGQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQD 240
           +F+     + +I QIYVDDI+FGG S   VE FV +M+ EF+MS+VGELT FLG Q++Q 
Sbjct: 878 LFMKDVEGKLMIAQIYVDDIVFGGMSRQMVEHFVKQMQSEFEMSLVGELTYFLGLQVRQM 937

Query: 241 KTGIFFSQEKYAKALISKFGMDG 246
           +  IF SQEKYAK ++ KFGM+G
Sbjct: 938 EDSIFVSQEKYAKNIVKKFGMEG 960

[Close]

BLAST of Cmc08g0235601 vs. NCBI nr
Match: KAA0059225.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 2.4e-85
Identity = 164/206 (79.61%), Postives = 175/206 (84.95%), Query Frame = 0


Query: 1    MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
            +EP TV+AAL+DEHWIL +QEELL FERNQVW+ VPKPP+ANIIGTKWIFKNKTDE+GRV
Sbjct: 987  LEPTTVSAALSDEHWILTIQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRV 1046

Query: 61   IRNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGY 120
            IRNKARLVAQGYSQIEGLDFGE FAP                  FKLFQMDVKSAFLNGY
Sbjct: 1047 IRNKARLVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKSAFLNGY 1106

Query: 121  LTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQT 180
            L EEVYVAQPKGFVD VH ++VYKLRKALY LKQAPRAWY+RLSTYLL+QGYQRGSADQT
Sbjct: 1107 LCEEVYVAQPKGFVDPVHEDHVYKLRKALYRLKQAPRAWYERLSTYLLQQGYQRGSADQT 1166

Query: 181  MFIYRQGTEFLIGQIYVDDIIFGGTS 189
            MFIYRQGT FLI QIYVD IIFG TS
Sbjct: 1167 MFIYRQGTNFLIVQIYVDGIIFGDTS 1192

[Close]

BLAST of Cmc08g0235601 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.0e-50
Identity = 107/261 (41.00%), Postives = 148/261 (56.70%), Query Frame = 0


Query: 2    EPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPP-HANIIGTKWIFKNKTDEQGRV 61
            EP T   AL DE W  AM  E+ +   N  WD VP PP H  I+G +WIF  K +  G +
Sbjct: 955  EPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSL 1014

Query: 62   IRNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGY 121
             R KARLVA+GY+Q  GLD+ E F+P                  + + Q+DV +AFL G 
Sbjct: 1015 NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1074

Query: 122  LTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQT 181
            LT++VY++QP GF+D    NYV KLRKALYGLKQAPRAWY  L  YLL  G+    +D +
Sbjct: 1075 LTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTS 1134

Query: 182  MFIYRQGTEFLIGQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQD 241
            +F+ ++G   +   +YVDDI+  G     +   +D + + F +    EL  FLG + K+ 
Sbjct: 1135 LFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRV 1194

Query: 242  KTGIFFSQEKYAKALISKFGM 244
             TG+  SQ +Y   L+++  M
Sbjct: 1195 PTGLHLSQRRYILDLLARTNM 1215

[Close]

BLAST of Cmc08g0235601 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.8e-48
Identity = 102/261 (39.08%), Postives = 149/261 (57.09%), Query Frame = 0


Query: 2    EPITVTAALTDEHWILAMQEELLSFERNQVWDPV-PKPPHANIIGTKWIFKNKTDEQGRV 61
            EP T   A+ D+ W  AM  E+ +   N  WD V P PP   I+G +WIF  K +  G +
Sbjct: 938  EPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSL 997

Query: 62   IRNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGY 121
             R KARLVA+GY+Q  GLD+ E F+P                  + + Q+DV +AFL G 
Sbjct: 998  NRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGT 1057

Query: 122  LTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQT 181
            LT+EVY++QP GFVD    +YV +LRKA+YGLKQAPRAWY  L TYLL  G+    +D +
Sbjct: 1058 LTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTS 1117

Query: 182  MFIYRQGTEFLIGQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQD 241
            +F+ ++G   +   +YVDDI+  G  +  ++  +D + + F +    +L  FLG + K+ 
Sbjct: 1118 LFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRV 1177

Query: 242  KTGIFFSQEKYAKALISKFGM 244
              G+  SQ +Y   L+++  M
Sbjct: 1178 PQGLHLSQRRYTLDLLARTNM 1198

[Close]

BLAST of Cmc08g0235601 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.5e-37
Identity = 85/247 (34.41%), Postives = 138/247 (55.87%), Query Frame = 0


Query: 18   AMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRVIRNKARLVAQGYSQIEG 77
            AMQEE+ S ++N  +  V  P     +  KW+FK K D   +++R KARLV +G+ Q +G
Sbjct: 829  AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 888

Query: 78   LDFGEMFAP------------------FKLFQMDVKSAFLNGYLTEEVYVAQPKGFVDLV 137
            +DF E+F+P                   ++ Q+DVK+AFL+G L EE+Y+ QP+GF    
Sbjct: 889  IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 948

Query: 138  HRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQTMFIYR-QGTEFLIGQIY 197
             ++ V KL K+LYGLKQAPR WY +  +++  Q Y +  +D  ++  R     F+I  +Y
Sbjct: 949  KKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLY 1008

Query: 198  VDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTG--IFFSQEKYAKA 244
            VDD++  G     + +    + + F M  +G     LG +I +++T   ++ SQEKY + 
Sbjct: 1009 VDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIER 1068

[Close]

BLAST of Cmc08g0235601 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-35
Identity = 85/250 (34.00%), Postives = 134/250 (53.60%), Query Frame = 0


Query: 15   WILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRVIRNKARLVAQGYSQ 74
            W  A+  EL + + N  W    +P + NI+ ++W+F  K +E G  IR KARLVA+G++Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 75   IEGLDFGEMFAP------------------FKLFQMDVKSAFLNGYLTEEVYVAQPKGFV 134
               +D+ E FAP                   K+ QMDVK+AFLNG L EE+Y+  P+G  
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI- 1025

Query: 135  DLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQTMFIYRQG--TEFLI 194
               + + V KL KA+YGLKQA R W++     L    +   S D+ ++I  +G   E + 
Sbjct: 1026 -SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIY 1085

Query: 195  GQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYA 245
              +YVDD++        +  F   +  +F+M+ + E+  F+G +I+  +  I+ SQ  Y 
Sbjct: 1086 VLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYV 1145

[Close]

BLAST of Cmc08g0235601 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.0e-16
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 2   EPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRVI 61
           EP +V  AL D  W  AMQEEL +  RN+ W  VP P + NI+G KW+FK K    G + 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 62  RNKARLVAQGYSQIEGLDFGEMFAP 87
           R KARLVA+G+ Q EG+ F E ++P
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSP 111

[Close]

BLAST of Cmc08g0235601 vs. ExPASy TrEMBL
Match: A0A5A7TJM5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00830 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.7e-97
Identity = 187/244 (76.64%), Postives = 205/244 (84.02%), Query Frame = 0


Query: 1   MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
           +EP TV+A L+DEHWILAMQEELL FERNQVW+ VPKPP+ANIIGTKWIFKNKTDE+  V
Sbjct: 189 LEPTTVSAVLSDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEE--V 248

Query: 61  IRNKARLVAQGYSQIEGLDFGEMFAPFKLFQMDVKSAFLNGYLTEEVYVAQPKGFVDLVH 120
            R +A  +   Y+          F  FKLFQMDVKSAFLNGYL+EEVYVAQPKGFVD  H
Sbjct: 249 ARLEAIRLLLSYT---------CFRRFKLFQMDVKSAFLNGYLSEEVYVAQPKGFVDPTH 308

Query: 121 RNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQTMFIYRQGTEFLIGQIYVD 180
           +++VYKLRKALY LKQAPRAWY+RLSTYLL+Q Y RGSADQTMFIYRQGT+FLI QIYVD
Sbjct: 309 QDHVYKLRKALYRLKQAPRAWYERLSTYLLQQEYHRGSADQTMFIYRQGTDFLIVQIYVD 368

Query: 181 DIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISK 240
           DIIFGGTSS YVEQFV +MK EFKMSMVGELT FLGFQI Q+ TGIFFSQEKYAK LI K
Sbjct: 369 DIIFGGTSSVYVEQFVAQMKGEFKMSMVGELTFFLGFQINQENTGIFFSQEKYAKNLIFK 421

Query: 241 FGMD 245
           FGMD
Sbjct: 429 FGMD 421

[Close]

BLAST of Cmc08g0235601 vs. ExPASy TrEMBL
Match: A0A5D3BDC9 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00160 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 8.5e-89
Identity = 181/244 (74.18%), Postives = 184/244 (75.41%), Query Frame = 0


Query: 1   MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
           MEP TVTAALTDEHWILAMQEELLSFERNQ                              
Sbjct: 95  MEPTTVTAALTDEHWILAMQEELLSFERNQ------------------------------ 154

Query: 61  IRNKARLVAQGYSQIEGLDFGEMFAPFKLFQMDVKSAFLNGYLTEEVYVAQPKGFVDLVH 120
                                     FKLFQMDVKSAFLNGYLTEEVY+AQPKGFVDLVH
Sbjct: 155 --------------------------FKLFQMDVKSAFLNGYLTEEVYIAQPKGFVDLVH 214

Query: 121 RNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQTMFIYRQGTEFLIGQIYVD 180
           R+YVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRG ADQTMFIYRQGTEFLI QIYV+
Sbjct: 215 RDYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGIADQTMFIYRQGTEFLIVQIYVN 274

Query: 181 DIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISK 240
           DIIF GTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISK
Sbjct: 275 DIIFSGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKALISK 282

Query: 241 FGMD 245
           FGMD
Sbjct: 335 FGMD 282

[Close]

BLAST of Cmc08g0235601 vs. ExPASy TrEMBL
Match: A0A2Z6P936 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_401320 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 3.9e-86
Identity = 162/263 (61.60%), Postives = 196/263 (74.52%), Query Frame = 0


Query: 1    MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
            +EP  V  ALTDE+WI AMQEEL  F+RN+VWD VP+P + N+IGTKW++KNK+DE G V
Sbjct: 936  IEPRNVKEALTDEYWINAMQEELGQFKRNEVWDLVPRPENVNVIGTKWVYKNKSDENGNV 995

Query: 61   IRNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGY 120
             RNKARLVAQGY+QIEG+DF E FAP                  F+LFQMDVKSAFLNGY
Sbjct: 996  TRNKARLVAQGYAQIEGVDFDETFAPVAHLESIRLLLGVACILKFELFQMDVKSAFLNGY 1055

Query: 121  LTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQT 180
            L EEVYV QPKGFVD    N+VYKL+KALYGLKQAPRAWY+RL+ +LL QGY++G  D+T
Sbjct: 1056 LNEEVYVEQPKGFVDPSLPNHVYKLKKALYGLKQAPRAWYERLTEFLLSQGYRKGGNDKT 1115

Query: 181  MFIYRQGTEFLIGQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQD 240
            +F+  +  + +I QIYVDDIIFGG S   V+ FV +M+ EF+MS+VGELT FLG Q+KQ 
Sbjct: 1116 LFVKEEEGKLIIAQIYVDDIIFGGMSGQMVQHFVQQMQSEFEMSLVGELTYFLGLQVKQM 1175

Query: 241  KTGIFFSQEKYAKALISKFGMDG 246
               IF SQ KYAK ++ KFG DG
Sbjct: 1176 SNCIFVSQSKYAKNIVKKFGQDG 1198

[Close]

BLAST of Cmc08g0235601 vs. ExPASy TrEMBL
Match: A0A2K3P4Z0 (Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g006933 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 5.1e-86
Identity = 160/263 (60.84%), Postives = 198/263 (75.29%), Query Frame = 0


Query: 1   MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
           +EP  V  ALTDE+WI AMQEEL  F+R++VWD VP+P   N+IGTKW++KNKTDE G +
Sbjct: 698 IEPKNVKEALTDEYWINAMQEELTQFKRSEVWDLVPRPEDVNVIGTKWVYKNKTDENGTI 757

Query: 61  IRNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGY 120
            RNKARLVAQGY+QIEG+DF E+FAP                  FKL+QMDVKSAFLNGY
Sbjct: 758 TRNKARLVAQGYTQIEGVDFDEIFAPVARLESIRLLLAVACILKFKLYQMDVKSAFLNGY 817

Query: 121 LTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQT 180
           L EEVYV QPKGFVD    N+VYKL+KALYGLKQAPRAWY+RL+ +L+ QGY++G  D+T
Sbjct: 818 LNEEVYVEQPKGFVDPSFPNHVYKLKKALYGLKQAPRAWYERLTEFLVNQGYKKGGHDKT 877

Query: 181 MFIYRQGTEFLIGQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQD 240
           +F+     + +I QIYVDDI+FGG S   VE FV +M+ EF+MS+VGELT FLG Q++Q 
Sbjct: 878 LFMKDVEGKLMIAQIYVDDIVFGGMSRQMVEHFVKQMQSEFEMSLVGELTYFLGLQVRQM 937

Query: 241 KTGIFFSQEKYAKALISKFGMDG 246
           +  IF SQEKYAK ++ KFGM+G
Sbjct: 938 EDSIFVSQEKYAKNIVKKFGMEG 960

[Close]

BLAST of Cmc08g0235601 vs. ExPASy TrEMBL
Match: A0A5A7V046 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001550 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.1e-85
Identity = 164/206 (79.61%), Postives = 175/206 (84.95%), Query Frame = 0


Query: 1    MEPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRV 60
            +EP TV+AAL+DEHWIL +QEELL FERNQVW+ VPKPP+ANIIGTKWIFKNKTDE+GRV
Sbjct: 987  LEPTTVSAALSDEHWILTIQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRV 1046

Query: 61   IRNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGY 120
            IRNKARLVAQGYSQIEGLDFGE FAP                  FKLFQMDVKSAFLNGY
Sbjct: 1047 IRNKARLVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKSAFLNGY 1106

Query: 121  LTEEVYVAQPKGFVDLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSADQT 180
            L EEVYVAQPKGFVD VH ++VYKLRKALY LKQAPRAWY+RLSTYLL+QGYQRGSADQT
Sbjct: 1107 LCEEVYVAQPKGFVDPVHEDHVYKLRKALYRLKQAPRAWYERLSTYLLQQGYQRGSADQT 1166

Query: 181  MFIYRQGTEFLIGQIYVDDIIFGGTS 189
            MFIYRQGT FLI QIYVD IIFG TS
Sbjct: 1167 MFIYRQGTNFLIVQIYVDGIIFGDTS 1192

[Close]

BLAST of Cmc08g0235601 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-42
Identity = 99/266 (37.22%), Postives = 142/266 (53.38%), Query Frame = 0


Query: 2   EPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRVI 61
           EP T   A     W  AM +E+ + E    W+    PP+   IG KW++K K +  G + 
Sbjct: 85  EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144

Query: 62  RNKARLVAQGYSQIEGLDFGEMFAP------------------FKLFQMDVKSAFLNGYL 121
           R KARLVA+GY+Q EG+DF E F+P                  F L Q+D+ +AFLNG L
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204

Query: 122 TEEVYVAQPKGFV----DLVHRNYVYKLRKALYGLKQAPRAWYKRLSTYLLRQGYQRGSA 181
            EE+Y+  P G+     D +  N V  L+K++YGLKQA R W+ + S  L+  G+ +  +
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264

Query: 182 DQTMFIYRQGTEFLIGQIYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQI 241
           D T F+    T FL   +YVDDII    + A V++   ++K  FK+  +G L  FLG +I
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324

Query: 242 KQDKTGIFFSQEKYAKALISKFGMDG 246
            +   GI   Q KYA  L+ + G+ G
Sbjct: 325 ARSAAGINICQRKYALDLLDETGLLG 350

[Close]

BLAST of Cmc08g0235601 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-17
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 2   EPITVTAALTDEHWILAMQEELLSFERNQVWDPVPKPPHANIIGTKWIFKNKTDEQGRVI 61
           EP +V  AL D  W  AMQEEL +  RN+ W  VP P + NI+G KW+FK K    G + 
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 62  RNKARLVAQGYSQIEGLDFGEMFAP 87
           R KARLVA+G+ Q EG+ F E ++P
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSP 111

[Close]

BLAST of Cmc08g0235601 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 56.2 bits (134), Expect = 4.2e-08
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 177 IYVDDIIFGGTSSAYVEQFVDRMKREFKMSMVGELTLFLGFQIKQDKTGIFFSQEKYAKA 236
           +YVDDI+  G+S+  +   + ++   F M  +G +  FLG QIK   +G+F SQ KYA+ 
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 237 LISKFGM 244
           +++  GM
Sbjct: 65  ILNNAGM 71

The following BLAST results are available for this feature:

BLAST of Cmc08g0235601 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043008.1	3.5e-97	76.64	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0045100.1	1.7e-88	74.18	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ96228.1 putative gag...	[more]
GAU46010.1	8.1e-86	61.60	hypothetical protein TSUD_401320 [Trifolium subterraneum]	[more]
PNY10358.1	1.1e-85	60.84	retrotransposon-related protein, partial [Trifolium pratense]	[more]
KAA0059225.1	2.4e-85	79.61	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc08g0235601 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.0e-50	41.00	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.8e-48	39.08	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	9.5e-37	34.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.0e-35	34.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	7.0e-16	49.41	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc08g0235601 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJM5	1.7e-97	76.64	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G0...	[more]
A0A5D3BDC9	8.5e-89	74.18	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A2Z6P936	3.9e-86	61.60	Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ...	[more]
A0A2K3P4Z0	5.1e-86	60.84	Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L19...	[more]
A0A5A7V046	1.1e-85	79.61	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G...	[more]

BLAST of Cmc08g0235601 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-42	37.22	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	5.0e-17	49.41	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	4.2e-08	37.31	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 29..87 e-value: 2.9E-13 score: 50.0 coord: 89..245 e-value: 1.7E-41 score: 142.5
None	No IPR available	PANTHER	PTHR11439:SF351	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 83..241
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 83..241
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 28..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc08g0235601.1	Cmc08g0235601.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding